co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G03190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0015979: photosynthesis	2.55E-11
4	GO:0015995: chlorophyll biosynthetic process	1.91E-09
5	GO:0051513: regulation of monopolar cell growth	5.76E-06
6	GO:0009772: photosynthetic electron transport in photosystem II	5.19E-05
7	GO:0010206: photosystem II repair	1.05E-04
8	GO:0043266: regulation of potassium ion transport	1.12E-04
9	GO:0042759: long-chain fatty acid biosynthetic process	1.12E-04
10	GO:2000021: regulation of ion homeostasis	1.12E-04
11	GO:1902458: positive regulation of stomatal opening	1.12E-04
12	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.12E-04
13	GO:0018119: peptidyl-cysteine S-nitrosylation	1.78E-04
14	GO:0009773: photosynthetic electron transport in photosystem I	1.78E-04
15	GO:0016024: CDP-diacylglycerol biosynthetic process	2.06E-04
16	GO:0010541: acropetal auxin transport	2.61E-04
17	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.61E-04
18	GO:0009735: response to cytokinin	3.42E-04
19	GO:0009664: plant-type cell wall organization	3.76E-04
20	GO:0015714: phosphoenolpyruvate transport	4.32E-04
21	GO:0090391: granum assembly	4.32E-04
22	GO:0045493: xylan catabolic process	4.32E-04
23	GO:0010160: formation of animal organ boundary	4.32E-04
24	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.39E-04
25	GO:0009647: skotomorphogenesis	6.19E-04
26	GO:0010306: rhamnogalacturonan II biosynthetic process	6.19E-04
27	GO:0080170: hydrogen peroxide transmembrane transport	6.19E-04
28	GO:0043481: anthocyanin accumulation in tissues in response to UV light	6.19E-04
29	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	6.19E-04
30	GO:0009958: positive gravitropism	7.34E-04
31	GO:0016042: lipid catabolic process	8.18E-04
32	GO:0030104: water homeostasis	8.23E-04
33	GO:0022622: root system development	8.23E-04
34	GO:0015713: phosphoglycerate transport	8.23E-04
35	GO:0045038: protein import into chloroplast thylakoid membrane	1.04E-03
36	GO:0009828: plant-type cell wall loosening	1.08E-03
37	GO:0009913: epidermal cell differentiation	1.27E-03
38	GO:0006655: phosphatidylglycerol biosynthetic process	1.27E-03
39	GO:0060918: auxin transport	1.27E-03
40	GO:0045490: pectin catabolic process	1.27E-03
41	GO:1900057: positive regulation of leaf senescence	1.78E-03
42	GO:0032880: regulation of protein localization	1.78E-03
43	GO:0010196: nonphotochemical quenching	1.78E-03
44	GO:0048527: lateral root development	1.91E-03
45	GO:2000070: regulation of response to water deprivation	2.06E-03
46	GO:0006783: heme biosynthetic process	2.66E-03
47	GO:0009245: lipid A biosynthetic process	2.66E-03
48	GO:0009640: photomorphogenesis	2.68E-03
49	GO:0010205: photoinhibition	2.97E-03
50	GO:0006535: cysteine biosynthetic process from serine	3.30E-03
51	GO:0006949: syncytium formation	3.30E-03
52	GO:0006782: protoporphyrinogen IX biosynthetic process	3.30E-03
53	GO:1903507: negative regulation of nucleic acid-templated transcription	3.65E-03
54	GO:0008361: regulation of cell size	4.00E-03
55	GO:0010588: cotyledon vascular tissue pattern formation	4.36E-03
56	GO:2000012: regulation of auxin polar transport	4.36E-03
57	GO:0010540: basipetal auxin transport	4.74E-03
58	GO:0010143: cutin biosynthetic process	4.74E-03
59	GO:0010030: positive regulation of seed germination	5.13E-03
60	GO:0010025: wax biosynthetic process	5.52E-03
61	GO:0019344: cysteine biosynthetic process	5.93E-03
62	GO:0048511: rhythmic process	6.78E-03
63	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.22E-03
64	GO:0009306: protein secretion	8.13E-03
65	GO:0048443: stamen development	8.13E-03
66	GO:0008284: positive regulation of cell proliferation	8.60E-03
67	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.60E-03
68	GO:0080022: primary root development	9.08E-03
69	GO:0034220: ion transmembrane transport	9.08E-03
70	GO:0010087: phloem or xylem histogenesis	9.08E-03
71	GO:0042631: cellular response to water deprivation	9.08E-03
72	GO:0042335: cuticle development	9.08E-03
73	GO:0048868: pollen tube development	9.57E-03
74	GO:0010305: leaf vascular tissue pattern formation	9.57E-03
75	GO:0009739: response to gibberellin	9.85E-03
76	GO:0015986: ATP synthesis coupled proton transport	1.01E-02
77	GO:0042752: regulation of circadian rhythm	1.01E-02
78	GO:0048825: cotyledon development	1.06E-02
79	GO:0000302: response to reactive oxygen species	1.11E-02
80	GO:0030163: protein catabolic process	1.22E-02
81	GO:0009639: response to red or far red light	1.27E-02
82	GO:0009567: double fertilization forming a zygote and endosperm	1.27E-02
83	GO:0009826: unidimensional cell growth	1.31E-02
84	GO:0010027: thylakoid membrane organization	1.44E-02
85	GO:0009860: pollen tube growth	1.47E-02
86	GO:0009627: systemic acquired resistance	1.56E-02
87	GO:0010411: xyloglucan metabolic process	1.62E-02
88	GO:0046777: protein autophosphorylation	1.81E-02
89	GO:0010218: response to far red light	1.86E-02
90	GO:0009637: response to blue light	2.06E-02
91	GO:0034599: cellular response to oxidative stress	2.12E-02
92	GO:0030001: metal ion transport	2.25E-02
93	GO:0042742: defense response to bacterium	2.38E-02
94	GO:0010114: response to red light	2.46E-02
95	GO:0009926: auxin polar transport	2.46E-02
96	GO:0009733: response to auxin	2.75E-02
97	GO:0008152: metabolic process	2.76E-02
98	GO:0031347: regulation of defense response	2.82E-02
99	GO:0042538: hyperosmotic salinity response	2.89E-02
100	GO:0009409: response to cold	3.47E-02
101	GO:0048367: shoot system development	3.51E-02
102	GO:0009734: auxin-activated signaling pathway	3.52E-02
103	GO:0042545: cell wall modification	3.83E-02
104	GO:0009624: response to nematode	3.91E-02
105	GO:0046686: response to cadmium ion	4.13E-02
106	GO:0009416: response to light stimulus	4.43E-02
107	GO:0009845: seed germination	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0016851: magnesium chelatase activity	1.14E-08
6	GO:0005528: FK506 binding	1.24E-05
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.33E-05
8	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.12E-04
9	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.12E-04
10	GO:0004853: uroporphyrinogen decarboxylase activity	1.12E-04
11	GO:0016630: protochlorophyllide reductase activity	2.61E-04
12	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.61E-04
13	GO:0016788: hydrolase activity, acting on ester bonds	3.48E-04
14	GO:0030570: pectate lyase activity	5.39E-04
15	GO:0052689: carboxylic ester hydrolase activity	5.51E-04
16	GO:0009044: xylan 1,4-beta-xylosidase activity	8.23E-04
17	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	8.23E-04
18	GO:0046556: alpha-L-arabinofuranosidase activity	8.23E-04
19	GO:0015120: phosphoglycerate transmembrane transporter activity	8.23E-04
20	GO:0016829: lyase activity	9.39E-04
21	GO:0031177: phosphopantetheine binding	1.27E-03
22	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.27E-03
23	GO:0004130: cytochrome-c peroxidase activity	1.27E-03
24	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.27E-03
25	GO:0004017: adenylate kinase activity	1.52E-03
26	GO:0000035: acyl binding	1.52E-03
27	GO:0004124: cysteine synthase activity	1.52E-03
28	GO:0008236: serine-type peptidase activity	1.57E-03
29	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.06E-03
30	GO:0005516: calmodulin binding	3.76E-03
31	GO:0031072: heat shock protein binding	4.36E-03
32	GO:0010329: auxin efflux transmembrane transporter activity	4.36E-03
33	GO:0008083: growth factor activity	4.74E-03
34	GO:0016746: transferase activity, transferring acyl groups	5.25E-03
35	GO:0003714: transcription corepressor activity	5.93E-03
36	GO:0004707: MAP kinase activity	6.78E-03
37	GO:0004252: serine-type endopeptidase activity	7.07E-03
38	GO:0003756: protein disulfide isomerase activity	8.13E-03
39	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.57E-03
40	GO:0005515: protein binding	1.11E-02
41	GO:0016791: phosphatase activity	1.27E-02
42	GO:0015250: water channel activity	1.44E-02
43	GO:0016168: chlorophyll binding	1.50E-02
44	GO:0005096: GTPase activator activity	1.80E-02
45	GO:0030145: manganese ion binding	1.93E-02
46	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.19E-02
47	GO:0003690: double-stranded DNA binding	3.12E-02
48	GO:0045330: aspartyl esterase activity	3.27E-02
49	GO:0008289: lipid binding	3.48E-02
50	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.51E-02
51	GO:0004650: polygalacturonase activity	3.67E-02
52	GO:0030599: pectinesterase activity	3.75E-02
53	GO:0016887: ATPase activity	3.87E-02
54	GO:0051082: unfolded protein binding	3.91E-02
55	GO:0019843: rRNA binding	4.59E-02
56	GO:0030170: pyridoxal phosphate binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009534: chloroplast thylakoid	1.98E-20
3	GO:0009535: chloroplast thylakoid membrane	1.78E-15
4	GO:0009507: chloroplast	7.66E-14
5	GO:0009941: chloroplast envelope	1.18E-10
6	GO:0009570: chloroplast stroma	1.25E-09
7	GO:0010007: magnesium chelatase complex	2.34E-09
8	GO:0009543: chloroplast thylakoid lumen	7.03E-09
9	GO:0009579: thylakoid	6.26E-08
10	GO:0031977: thylakoid lumen	4.53E-07
11	GO:0030095: chloroplast photosystem II	6.99E-06
12	GO:0009533: chloroplast stromal thylakoid	5.19E-05
13	GO:0009515: granal stacked thylakoid	1.12E-04
14	GO:0043674: columella	1.12E-04
15	GO:0009508: plastid chromosome	2.36E-04
16	GO:0030093: chloroplast photosystem I	2.61E-04
17	GO:0005618: cell wall	4.29E-04
18	GO:0033281: TAT protein transport complex	4.32E-04
19	GO:0009509: chromoplast	4.32E-04
20	GO:0009531: secondary cell wall	6.19E-04
21	GO:0009523: photosystem II	8.42E-04
22	GO:0009295: nucleoid	1.14E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.27E-03
24	GO:0042807: central vacuole	1.78E-03
25	GO:0009538: photosystem I reaction center	2.06E-03
26	GO:0008180: COP9 signalosome	2.66E-03
27	GO:0042644: chloroplast nucleoid	2.66E-03
28	GO:0031969: chloroplast membrane	2.88E-03
29	GO:0005768: endosome	5.02E-03
30	GO:0009654: photosystem II oxygen evolving complex	6.35E-03
31	GO:0009505: plant-type cell wall	8.30E-03
32	GO:0009705: plant-type vacuole membrane	8.80E-03
33	GO:0009522: photosystem I	1.01E-02
34	GO:0019898: extrinsic component of membrane	1.06E-02
35	GO:0010319: stromule	1.33E-02
36	GO:0005576: extracellular region	1.50E-02
37	GO:0019005: SCF ubiquitin ligase complex	1.74E-02
38	GO:0016020: membrane	2.03E-02
39	GO:0000502: proteasome complex	3.04E-02
40	GO:0009706: chloroplast inner membrane	3.91E-02
41	GO:0010287: plastoglobule	4.42E-02