co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010200: response to chitin	5.31E-07
2	GO:0009751: response to salicylic acid	1.13E-06
3	GO:0071497: cellular response to freezing	2.00E-05
4	GO:0009753: response to jasmonic acid	5.34E-05
5	GO:0009873: ethylene-activated signaling pathway	7.05E-05
6	GO:0046345: abscisic acid catabolic process	7.90E-05
7	GO:0030162: regulation of proteolysis	2.20E-04
8	GO:0030154: cell differentiation	3.33E-04
9	GO:0006355: regulation of transcription, DNA-templated	3.73E-04
10	GO:1903507: negative regulation of nucleic acid-templated transcription	3.90E-04
11	GO:0034605: cellular response to heat	5.02E-04
12	GO:0009723: response to ethylene	5.46E-04
13	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.45E-04
14	GO:0040007: growth	7.88E-04
15	GO:0009741: response to brassinosteroid	9.64E-04
16	GO:0010268: brassinosteroid homeostasis	9.64E-04
17	GO:0016132: brassinosteroid biosynthetic process	1.10E-03
18	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.10E-03
19	GO:0009639: response to red or far red light	1.25E-03
20	GO:0016125: sterol metabolic process	1.25E-03
21	GO:0019760: glucosinolate metabolic process	1.25E-03
22	GO:0001666: response to hypoxia	1.40E-03
23	GO:0048527: lateral root development	1.84E-03
24	GO:0042542: response to hydrogen peroxide	2.25E-03
25	GO:0031347: regulation of defense response	2.63E-03
26	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.63E-03
27	GO:0009845: seed germination	4.41E-03
28	GO:0007623: circadian rhythm	5.21E-03
29	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.63E-03
30	GO:0045454: cell redox homeostasis	9.27E-03
31	GO:0006351: transcription, DNA-templated	1.27E-02
32	GO:0006952: defense response	1.60E-02
33	GO:0009611: response to wounding	1.64E-02
34	GO:0045893: positive regulation of transcription, DNA-templated	1.78E-02
35	GO:0009414: response to water deprivation	2.62E-02
36	GO:0009733: response to auxin	2.90E-02
37	GO:0009409: response to cold	3.31E-02
38	GO:0046686: response to cadmium ion	3.66E-02
39	GO:0007275: multicellular organism development	4.32E-02
40	GO:0009737: response to abscisic acid	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	3.67E-05
2	GO:0044212: transcription regulatory region DNA binding	2.97E-04
3	GO:0003682: chromatin binding	5.00E-04
4	GO:0003712: transcription cofactor activity	5.40E-04
5	GO:0003714: transcription corepressor activity	6.20E-04
6	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.74E-04
7	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	6.92E-04
8	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	7.67E-04
9	GO:0003677: DNA binding	9.16E-04
10	GO:0004402: histone acetyltransferase activity	9.19E-04
11	GO:0001085: RNA polymerase II transcription factor binding	9.64E-04
12	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.84E-03
13	GO:0005516: calmodulin binding	2.17E-03
14	GO:0043565: sequence-specific DNA binding	2.30E-03
15	GO:0031625: ubiquitin protein ligase binding	3.03E-03
16	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.57E-03
17	GO:0008270: zinc ion binding	1.75E-02
18	GO:0019825: oxygen binding	2.07E-02
19	GO:0005506: iron ion binding	2.64E-02
20	GO:0004842: ubiquitin-protein transferase activity	3.36E-02
21	GO:0020037: heme binding	3.69E-02

Rank	GO Term	Adjusted P value
1	GO:0005615: extracellular space	3.45E-04
2	GO:0005667: transcription factor complex	1.50E-03
3	GO:0019005: SCF ubiquitin ligase complex	1.67E-03
4	GO:0009505: plant-type cell wall	3.62E-03
5	GO:0048046: apoplast	1.05E-02
6	GO:0005794: Golgi apparatus	1.13E-02
7	GO:0005634: nucleus	3.05E-02
8	GO:0009536: plastid	3.08E-02