Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G02410

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006482: protein demethylation0.00E+00
2GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
3GO:0080056: petal vascular tissue pattern formation0.00E+00
4GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
5GO:0010360: negative regulation of anion channel activity0.00E+00
6GO:0032497: detection of lipopolysaccharide0.00E+00
7GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
8GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
9GO:0080057: sepal vascular tissue pattern formation0.00E+00
10GO:0006983: ER overload response0.00E+00
11GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
12GO:0036258: multivesicular body assembly0.00E+00
13GO:0007141: male meiosis I0.00E+00
14GO:0000731: DNA synthesis involved in DNA repair0.00E+00
15GO:0010793: regulation of mRNA export from nucleus0.00E+00
16GO:0042362: fat-soluble vitamin biosynthetic process0.00E+00
17GO:0000478: endonucleolytic cleavage involved in rRNA processing0.00E+00
18GO:0010398: xylogalacturonan metabolic process0.00E+00
19GO:0048232: male gamete generation9.77E-05
20GO:1900425: negative regulation of defense response to bacterium9.77E-05
21GO:0016559: peroxisome fission2.25E-04
22GO:0035266: meristem growth2.46E-04
23GO:0048363: mucilage pectin metabolic process2.46E-04
24GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway2.46E-04
25GO:0007292: female gamete generation2.46E-04
26GO:0000303: response to superoxide2.46E-04
27GO:1902361: mitochondrial pyruvate transmembrane transport2.46E-04
28GO:0010265: SCF complex assembly2.46E-04
29GO:0030968: endoplasmic reticulum unfolded protein response2.78E-04
30GO:0009873: ethylene-activated signaling pathway3.79E-04
31GO:0050684: regulation of mRNA processing5.44E-04
32GO:0050994: regulation of lipid catabolic process5.44E-04
33GO:0009915: phloem sucrose loading5.44E-04
34GO:0000719: photoreactive repair5.44E-04
35GO:0043066: negative regulation of apoptotic process5.44E-04
36GO:0006850: mitochondrial pyruvate transport5.44E-04
37GO:0051788: response to misfolded protein5.44E-04
38GO:0051258: protein polymerization5.44E-04
39GO:0000266: mitochondrial fission6.18E-04
40GO:0010119: regulation of stomatal movement7.31E-04
41GO:0060968: regulation of gene silencing8.83E-04
42GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening8.83E-04
43GO:0032784: regulation of DNA-templated transcription, elongation8.83E-04
44GO:0010359: regulation of anion channel activity8.83E-04
45GO:0061158: 3'-UTR-mediated mRNA destabilization8.83E-04
46GO:0080055: low-affinity nitrate transport8.83E-04
47GO:0051176: positive regulation of sulfur metabolic process8.83E-04
48GO:0010116: positive regulation of abscisic acid biosynthetic process1.26E-03
49GO:2001289: lipid X metabolic process1.26E-03
50GO:0070301: cellular response to hydrogen peroxide1.26E-03
51GO:0072334: UDP-galactose transmembrane transport1.26E-03
52GO:0006809: nitric oxide biosynthetic process1.26E-03
53GO:0080001: mucilage extrusion from seed coat1.26E-03
54GO:0072583: clathrin-dependent endocytosis1.26E-03
55GO:0070676: intralumenal vesicle formation1.26E-03
56GO:0006986: response to unfolded protein1.26E-03
57GO:0001676: long-chain fatty acid metabolic process1.26E-03
58GO:0033320: UDP-D-xylose biosynthetic process1.68E-03
59GO:0042991: transcription factor import into nucleus1.68E-03
60GO:0009229: thiamine diphosphate biosynthetic process2.15E-03
61GO:0007029: endoplasmic reticulum organization2.15E-03
62GO:0009247: glycolipid biosynthetic process2.15E-03
63GO:0046283: anthocyanin-containing compound metabolic process2.15E-03
64GO:0005513: detection of calcium ion2.15E-03
65GO:0048544: recognition of pollen2.27E-03
66GO:0009723: response to ethylene2.27E-03
67GO:0048366: leaf development2.33E-03
68GO:0000302: response to reactive oxygen species2.61E-03
69GO:0048827: phyllome development2.65E-03
70GO:0006555: methionine metabolic process2.65E-03
71GO:0043248: proteasome assembly2.65E-03
72GO:0070814: hydrogen sulfide biosynthetic process2.65E-03
73GO:0042732: D-xylose metabolic process2.65E-03
74GO:0010358: leaf shaping2.65E-03
75GO:0045040: protein import into mitochondrial outer membrane2.65E-03
76GO:1902456: regulation of stomatal opening2.65E-03
77GO:0009228: thiamine biosynthetic process2.65E-03
78GO:0035435: phosphate ion transmembrane transport2.65E-03
79GO:0006014: D-ribose metabolic process2.65E-03
80GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.65E-03
81GO:0046777: protein autophosphorylation2.80E-03
82GO:0042742: defense response to bacterium2.91E-03
83GO:0006914: autophagy3.16E-03
84GO:0019509: L-methionine salvage from methylthioadenosine3.18E-03
85GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.18E-03
86GO:0009612: response to mechanical stimulus3.18E-03
87GO:0048280: vesicle fusion with Golgi apparatus3.18E-03
88GO:0010189: vitamin E biosynthetic process3.18E-03
89GO:0050790: regulation of catalytic activity3.75E-03
90GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.75E-03
91GO:0046470: phosphatidylcholine metabolic process3.75E-03
92GO:0006744: ubiquinone biosynthetic process3.75E-03
93GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.75E-03
94GO:1902074: response to salt3.75E-03
95GO:0010029: regulation of seed germination3.98E-03
96GO:0009816: defense response to bacterium, incompatible interaction3.98E-03
97GO:0009819: drought recovery4.35E-03
98GO:0006605: protein targeting4.35E-03
99GO:0019375: galactolipid biosynthetic process4.35E-03
100GO:1900150: regulation of defense response to fungus4.35E-03
101GO:0010078: maintenance of root meristem identity4.35E-03
102GO:2000070: regulation of response to water deprivation4.35E-03
103GO:0009408: response to heat4.57E-03
104GO:0017004: cytochrome complex assembly4.98E-03
105GO:0015996: chlorophyll catabolic process4.98E-03
106GO:0009827: plant-type cell wall modification4.98E-03
107GO:0006261: DNA-dependent DNA replication4.98E-03
108GO:0010150: leaf senescence5.12E-03
109GO:0009821: alkaloid biosynthetic process5.65E-03
110GO:0090333: regulation of stomatal closure5.65E-03
111GO:0009867: jasmonic acid mediated signaling pathway6.21E-03
112GO:0045087: innate immune response6.21E-03
113GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.33E-03
114GO:0043069: negative regulation of programmed cell death7.06E-03
115GO:0048829: root cap development7.06E-03
116GO:0010629: negative regulation of gene expression7.06E-03
117GO:0006896: Golgi to vacuole transport7.06E-03
118GO:0006995: cellular response to nitrogen starvation7.06E-03
119GO:0051026: chiasma assembly7.06E-03
120GO:0000103: sulfate assimilation7.06E-03
121GO:0006631: fatty acid metabolic process7.39E-03
122GO:0010015: root morphogenesis7.80E-03
123GO:0000038: very long-chain fatty acid metabolic process7.80E-03
124GO:0016485: protein processing7.80E-03
125GO:0051707: response to other organism8.02E-03
126GO:0012501: programmed cell death8.58E-03
127GO:0015706: nitrate transport8.58E-03
128GO:0045037: protein import into chloroplast stroma8.58E-03
129GO:0010105: negative regulation of ethylene-activated signaling pathway8.58E-03
130GO:0006829: zinc II ion transport9.38E-03
131GO:0010588: cotyledon vascular tissue pattern formation9.38E-03
132GO:0006626: protein targeting to mitochondrion9.38E-03
133GO:0010102: lateral root morphogenesis9.38E-03
134GO:0006260: DNA replication9.71E-03
135GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process9.71E-03
136GO:0006970: response to osmotic stress9.81E-03
137GO:0009266: response to temperature stimulus1.02E-02
138GO:0009933: meristem structural organization1.02E-02
139GO:0006446: regulation of translational initiation1.02E-02
140GO:0006364: rRNA processing1.08E-02
141GO:0009225: nucleotide-sugar metabolic process1.11E-02
142GO:0090351: seedling development1.11E-02
143GO:0034976: response to endoplasmic reticulum stress1.20E-02
144GO:0006636: unsaturated fatty acid biosynthetic process1.20E-02
145GO:0006468: protein phosphorylation1.27E-02
146GO:0009737: response to abscisic acid1.28E-02
147GO:2000377: regulation of reactive oxygen species metabolic process1.29E-02
148GO:0048367: shoot system development1.32E-02
149GO:0006825: copper ion transport1.38E-02
150GO:0051302: regulation of cell division1.38E-02
151GO:0006874: cellular calcium ion homeostasis1.38E-02
152GO:0031408: oxylipin biosynthetic process1.47E-02
153GO:0080092: regulation of pollen tube growth1.57E-02
154GO:0016226: iron-sulfur cluster assembly1.57E-02
155GO:0007131: reciprocal meiotic recombination1.57E-02
156GO:0030433: ubiquitin-dependent ERAD pathway1.57E-02
157GO:0007005: mitochondrion organization1.57E-02
158GO:0006012: galactose metabolic process1.67E-02
159GO:0009411: response to UV1.67E-02
160GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.88E-02
161GO:0042147: retrograde transport, endosome to Golgi1.88E-02
162GO:0010087: phloem or xylem histogenesis1.99E-02
163GO:0005975: carbohydrate metabolic process2.01E-02
164GO:0045489: pectin biosynthetic process2.09E-02
165GO:0010305: leaf vascular tissue pattern formation2.09E-02
166GO:0046686: response to cadmium ion2.10E-02
167GO:0009845: seed germination2.10E-02
168GO:0042752: regulation of circadian rhythm2.21E-02
169GO:0055072: iron ion homeostasis2.32E-02
170GO:0006623: protein targeting to vacuole2.32E-02
171GO:0010183: pollen tube guidance2.32E-02
172GO:0048825: cotyledon development2.32E-02
173GO:0009749: response to glucose2.32E-02
174GO:0019252: starch biosynthetic process2.32E-02
175GO:0071554: cell wall organization or biogenesis2.43E-02
176GO:0002229: defense response to oomycetes2.43E-02
177GO:0006891: intra-Golgi vesicle-mediated transport2.43E-02
178GO:0010193: response to ozone2.43E-02
179GO:0009630: gravitropism2.55E-02
180GO:0016032: viral process2.55E-02
181GO:1901657: glycosyl compound metabolic process2.67E-02
182GO:0006310: DNA recombination2.79E-02
183GO:0010252: auxin homeostasis2.79E-02
184GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.99E-02
185GO:0051607: defense response to virus3.04E-02
186GO:0009615: response to virus3.16E-02
187GO:0042128: nitrate assimilation3.42E-02
188GO:0006888: ER to Golgi vesicle-mediated transport3.55E-02
189GO:0009738: abscisic acid-activated signaling pathway3.78E-02
190GO:0010311: lateral root formation3.96E-02
191GO:0009793: embryo development ending in seed dormancy4.04E-02
192GO:0006499: N-terminal protein myristoylation4.10E-02
193GO:0015031: protein transport4.42E-02
194GO:0016310: phosphorylation4.45E-02
195GO:0007049: cell cycle4.60E-02
196GO:0006351: transcription, DNA-templated4.96E-02
197GO:0030001: metal ion transport4.96E-02
RankGO TermAdjusted P value
1GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
2GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
3GO:0015370: solute:sodium symporter activity0.00E+00
4GO:0050334: thiaminase activity0.00E+00
5GO:0010176: homogentisate phytyltransferase activity0.00E+00
6GO:0051723: protein methylesterase activity0.00E+00
7GO:0005524: ATP binding7.03E-06
8GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.48E-05
9GO:0004674: protein serine/threonine kinase activity1.93E-04
10GO:0032050: clathrin heavy chain binding2.46E-04
11GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.46E-04
12GO:0046481: digalactosyldiacylglycerol synthase activity2.46E-04
13GO:0016887: ATPase activity5.51E-04
14GO:0005515: protein binding6.69E-04
15GO:0016301: kinase activity8.48E-04
16GO:0052692: raffinose alpha-galactosidase activity8.83E-04
17GO:0080054: low-affinity nitrate transmembrane transporter activity8.83E-04
18GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity8.83E-04
19GO:0005047: signal recognition particle binding8.83E-04
20GO:0019829: cation-transporting ATPase activity8.83E-04
21GO:0004557: alpha-galactosidase activity8.83E-04
22GO:0050833: pyruvate transmembrane transporter activity8.83E-04
23GO:0004781: sulfate adenylyltransferase (ATP) activity8.83E-04
24GO:0016805: dipeptidase activity8.83E-04
25GO:0043130: ubiquitin binding1.08E-03
26GO:0031176: endo-1,4-beta-xylanase activity1.26E-03
27GO:0035250: UDP-galactosyltransferase activity1.26E-03
28GO:0015204: urea transmembrane transporter activity1.68E-03
29GO:0004659: prenyltransferase activity1.68E-03
30GO:0004301: epoxide hydrolase activity1.68E-03
31GO:0005459: UDP-galactose transmembrane transporter activity2.15E-03
32GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.15E-03
33GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.15E-03
34GO:0048040: UDP-glucuronate decarboxylase activity2.65E-03
35GO:0035252: UDP-xylosyltransferase activity2.65E-03
36GO:0036402: proteasome-activating ATPase activity2.65E-03
37GO:0070403: NAD+ binding3.18E-03
38GO:0003950: NAD+ ADP-ribosyltransferase activity3.18E-03
39GO:0004012: phospholipid-translocating ATPase activity3.18E-03
40GO:0004747: ribokinase activity3.18E-03
41GO:0003978: UDP-glucose 4-epimerase activity3.18E-03
42GO:0008235: metalloexopeptidase activity3.75E-03
43GO:0102425: myricetin 3-O-glucosyltransferase activity3.75E-03
44GO:0102360: daphnetin 3-O-glucosyltransferase activity3.75E-03
45GO:0004620: phospholipase activity3.75E-03
46GO:0051213: dioxygenase activity3.76E-03
47GO:0047893: flavonol 3-O-glucosyltransferase activity4.35E-03
48GO:0008865: fructokinase activity4.35E-03
49GO:0004630: phospholipase D activity4.98E-03
50GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.98E-03
51GO:0005375: copper ion transmembrane transporter activity4.98E-03
52GO:0071949: FAD binding5.65E-03
53GO:0030145: manganese ion binding5.67E-03
54GO:0030955: potassium ion binding6.33E-03
55GO:0016844: strictosidine synthase activity6.33E-03
56GO:0004743: pyruvate kinase activity6.33E-03
57GO:0008047: enzyme activator activity7.06E-03
58GO:0004177: aminopeptidase activity7.80E-03
59GO:0004521: endoribonuclease activity8.58E-03
60GO:0000287: magnesium ion binding8.71E-03
61GO:0015293: symporter activity9.01E-03
62GO:0005388: calcium-transporting ATPase activity9.38E-03
63GO:0000175: 3'-5'-exoribonuclease activity9.38E-03
64GO:0005315: inorganic phosphate transmembrane transporter activity9.38E-03
65GO:0004535: poly(A)-specific ribonuclease activity1.02E-02
66GO:0017025: TBP-class protein binding1.11E-02
67GO:0004970: ionotropic glutamate receptor activity1.11E-02
68GO:0005217: intracellular ligand-gated ion channel activity1.11E-02
69GO:0043565: sequence-specific DNA binding1.15E-02
70GO:0003887: DNA-directed DNA polymerase activity1.20E-02
71GO:0008234: cysteine-type peptidase activity1.20E-02
72GO:0031625: ubiquitin protein ligase binding1.20E-02
73GO:0061630: ubiquitin protein ligase activity1.25E-02
74GO:0043424: protein histidine kinase binding1.38E-02
75GO:0008408: 3'-5' exonuclease activity1.47E-02
76GO:0035251: UDP-glucosyltransferase activity1.47E-02
77GO:0004540: ribonuclease activity1.47E-02
78GO:0016779: nucleotidyltransferase activity1.57E-02
79GO:0004722: protein serine/threonine phosphatase activity1.66E-02
80GO:0030246: carbohydrate binding1.71E-02
81GO:0003727: single-stranded RNA binding1.77E-02
82GO:0047134: protein-disulfide reductase activity1.88E-02
83GO:0005516: calmodulin binding2.02E-02
84GO:0046873: metal ion transmembrane transporter activity2.09E-02
85GO:0004791: thioredoxin-disulfide reductase activity2.21E-02
86GO:0016853: isomerase activity2.21E-02
87GO:0004872: receptor activity2.32E-02
88GO:0004197: cysteine-type endopeptidase activity2.55E-02
89GO:0005509: calcium ion binding2.77E-02
90GO:0016791: phosphatase activity2.79E-02
91GO:0008483: transaminase activity2.91E-02
92GO:0008194: UDP-glycosyltransferase activity2.99E-02
93GO:0016413: O-acetyltransferase activity3.04E-02
94GO:0016597: amino acid binding3.04E-02
95GO:0009931: calcium-dependent protein serine/threonine kinase activity3.42E-02
96GO:0004683: calmodulin-dependent protein kinase activity3.55E-02
97GO:0102483: scopolin beta-glucosidase activity3.55E-02
98GO:0004721: phosphoprotein phosphatase activity3.55E-02
99GO:0004806: triglyceride lipase activity3.55E-02
100GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.82E-02
101GO:0005096: GTPase activator activity3.96E-02
102GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.52E-02
103GO:0003993: acid phosphatase activity4.66E-02
104GO:0000149: SNARE binding4.81E-02
105GO:0008422: beta-glucosidase activity4.81E-02
106GO:0004842: ubiquitin-protein transferase activity4.97E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0005773: vacuole1.90E-05
3GO:0005783: endoplasmic reticulum7.00E-05
4GO:0043625: delta DNA polymerase complex2.46E-04
5GO:0030014: CCR4-NOT complex2.46E-04
6GO:0005778: peroxisomal membrane3.73E-04
7GO:0016021: integral component of membrane4.19E-04
8GO:0005789: endoplasmic reticulum membrane6.58E-04
9GO:0042406: extrinsic component of endoplasmic reticulum membrane8.83E-04
10GO:0005782: peroxisomal matrix8.83E-04
11GO:0031902: late endosome membrane1.02E-03
12GO:0005886: plasma membrane1.22E-03
13GO:0031461: cullin-RING ubiquitin ligase complex1.26E-03
14GO:0000323: lytic vacuole1.26E-03
15GO:0005741: mitochondrial outer membrane1.30E-03
16GO:0005746: mitochondrial respiratory chain2.15E-03
17GO:0000813: ESCRT I complex2.15E-03
18GO:0030140: trans-Golgi network transport vesicle2.65E-03
19GO:0030173: integral component of Golgi membrane3.18E-03
20GO:0016363: nuclear matrix3.18E-03
21GO:0031597: cytosolic proteasome complex3.18E-03
22GO:0000794: condensed nuclear chromosome3.75E-03
23GO:0031595: nuclear proteasome complex3.75E-03
24GO:0012507: ER to Golgi transport vesicle membrane4.35E-03
25GO:0031305: integral component of mitochondrial inner membrane4.35E-03
26GO:0000151: ubiquitin ligase complex4.90E-03
27GO:0005742: mitochondrial outer membrane translocase complex4.98E-03
28GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.98E-03
29GO:0016604: nuclear body6.33E-03
30GO:0008540: proteasome regulatory particle, base subcomplex6.33E-03
31GO:0005802: trans-Golgi network6.51E-03
32GO:0030125: clathrin vesicle coat7.06E-03
33GO:0048471: perinuclear region of cytoplasm7.80E-03
34GO:0005764: lysosome1.02E-02
35GO:0005829: cytosol1.03E-02
36GO:0030176: integral component of endoplasmic reticulum membrane1.11E-02
37GO:0005635: nuclear envelope1.16E-02
38GO:0005744: mitochondrial inner membrane presequence translocase complex1.77E-02
39GO:0000790: nuclear chromatin1.88E-02
40GO:0030136: clathrin-coated vesicle1.88E-02
41GO:0009524: phragmoplast2.04E-02
42GO:0005770: late endosome2.09E-02
43GO:0005768: endosome2.67E-02
44GO:0009707: chloroplast outer membrane3.82E-02
45GO:0000325: plant-type vacuole4.24E-02
46GO:0016020: membrane4.28E-02
47GO:0000786: nucleosome4.38E-02
48GO:0005794: Golgi apparatus4.61E-02
49GO:0005819: spindle4.81E-02
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Gene type



Gene DE type