co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002191: cap-dependent translational initiation	0.00E+00
2	GO:0043201: response to leucine	0.00E+00
3	GO:0080053: response to phenylalanine	0.00E+00
4	GO:0002376: immune system process	0.00E+00
5	GO:0080052: response to histidine	0.00E+00
6	GO:0006983: ER overload response	0.00E+00
7	GO:0006793: phosphorus metabolic process	0.00E+00
8	GO:0048227: plasma membrane to endosome transport	0.00E+00
9	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
10	GO:0072722: response to amitrole	0.00E+00
11	GO:0006592: ornithine biosynthetic process	0.00E+00
12	GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response	0.00E+00
13	GO:0009615: response to virus	2.64E-05
14	GO:0006014: D-ribose metabolic process	8.60E-05
15	GO:0010150: leaf senescence	1.20E-04
16	GO:0009749: response to glucose	2.07E-04
17	GO:0018343: protein farnesylation	2.27E-04
18	GO:0010265: SCF complex assembly	2.27E-04
19	GO:0080120: CAAX-box protein maturation	2.27E-04
20	GO:0071586: CAAX-box protein processing	2.27E-04
21	GO:0015760: glucose-6-phosphate transport	2.27E-04
22	GO:1990641: response to iron ion starvation	2.27E-04
23	GO:0030968: endoplasmic reticulum unfolded protein response	2.48E-04
24	GO:0007264: small GTPase mediated signal transduction	2.49E-04
25	GO:0009821: alkaloid biosynthetic process	3.00E-04
26	GO:0043069: negative regulation of programmed cell death	4.18E-04
27	GO:0019374: galactolipid metabolic process	5.05E-04
28	GO:0006101: citrate metabolic process	5.05E-04
29	GO:0043066: negative regulation of apoptotic process	5.05E-04
30	GO:0015865: purine nucleotide transport	5.05E-04
31	GO:0042939: tripeptide transport	5.05E-04
32	GO:0015712: hexose phosphate transport	5.05E-04
33	GO:0006423: cysteinyl-tRNA aminoacylation	5.05E-04
34	GO:1902000: homogentisate catabolic process	5.05E-04
35	GO:0042325: regulation of phosphorylation	5.05E-04
36	GO:0019441: tryptophan catabolic process to kynurenine	5.05E-04
37	GO:0006996: organelle organization	5.05E-04
38	GO:0051592: response to calcium ion	5.05E-04
39	GO:0046686: response to cadmium ion	5.20E-04
40	GO:0045454: cell redox homeostasis	5.91E-04
41	GO:0006499: N-terminal protein myristoylation	5.98E-04
42	GO:1900055: regulation of leaf senescence	8.21E-04
43	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	8.21E-04
44	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	8.21E-04
45	GO:0010359: regulation of anion channel activity	8.21E-04
46	GO:0035436: triose phosphate transmembrane transport	8.21E-04
47	GO:0010351: lithium ion transport	8.21E-04
48	GO:0018342: protein prenylation	8.21E-04
49	GO:0010272: response to silver ion	8.21E-04
50	GO:0009072: aromatic amino acid family metabolic process	8.21E-04
51	GO:0015714: phosphoenolpyruvate transport	8.21E-04
52	GO:0034976: response to endoplasmic reticulum stress	8.76E-04
53	GO:2000377: regulation of reactive oxygen species metabolic process	9.67E-04
54	GO:0009744: response to sucrose	9.77E-04
55	GO:0006874: cellular calcium ion homeostasis	1.06E-03
56	GO:0009399: nitrogen fixation	1.17E-03
57	GO:0006986: response to unfolded protein	1.17E-03
58	GO:0016998: cell wall macromolecule catabolic process	1.17E-03
59	GO:0006882: cellular zinc ion homeostasis	1.17E-03
60	GO:0001676: long-chain fatty acid metabolic process	1.17E-03
61	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.17E-03
62	GO:0070301: cellular response to hydrogen peroxide	1.17E-03
63	GO:0046902: regulation of mitochondrial membrane permeability	1.17E-03
64	GO:0072334: UDP-galactose transmembrane transport	1.17E-03
65	GO:0015713: phosphoglycerate transport	1.56E-03
66	GO:0042938: dipeptide transport	1.56E-03
67	GO:0006542: glutamine biosynthetic process	1.56E-03
68	GO:0010109: regulation of photosynthesis	1.56E-03
69	GO:0033320: UDP-D-xylose biosynthetic process	1.56E-03
70	GO:0009620: response to fungus	1.97E-03
71	GO:0006097: glyoxylate cycle	1.99E-03
72	GO:0006461: protein complex assembly	1.99E-03
73	GO:0007029: endoplasmic reticulum organization	1.99E-03
74	GO:0019252: starch biosynthetic process	2.18E-03
75	GO:0010200: response to chitin	2.23E-03
76	GO:1902456: regulation of stomatal opening	2.45E-03
77	GO:1900425: negative regulation of defense response to bacterium	2.45E-03
78	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.45E-03
79	GO:0035435: phosphate ion transmembrane transport	2.45E-03
80	GO:0002238: response to molecule of fungal origin	2.45E-03
81	GO:0009643: photosynthetic acclimation	2.45E-03
82	GO:0010405: arabinogalactan protein metabolic process	2.45E-03
83	GO:0001731: formation of translation preinitiation complex	2.45E-03
84	GO:0042732: D-xylose metabolic process	2.45E-03
85	GO:0010555: response to mannitol	2.94E-03
86	GO:2000067: regulation of root morphogenesis	2.94E-03
87	GO:0000338: protein deneddylation	3.47E-03
88	GO:0042773: ATP synthesis coupled electron transport	3.47E-03
89	GO:0030026: cellular manganese ion homeostasis	3.47E-03
90	GO:1900057: positive regulation of leaf senescence	3.47E-03
91	GO:1902074: response to salt	3.47E-03
92	GO:1900056: negative regulation of leaf senescence	3.47E-03
93	GO:0042128: nitrate assimilation	3.75E-03
94	GO:0009751: response to salicylic acid	3.75E-03
95	GO:0009819: drought recovery	4.02E-03
96	GO:0043068: positive regulation of programmed cell death	4.02E-03
97	GO:1900150: regulation of defense response to fungus	4.02E-03
98	GO:0006102: isocitrate metabolic process	4.02E-03
99	GO:0006644: phospholipid metabolic process	4.02E-03
100	GO:0009753: response to jasmonic acid	4.27E-03
101	GO:0007186: G-protein coupled receptor signaling pathway	4.60E-03
102	GO:0006526: arginine biosynthetic process	4.60E-03
103	GO:0006972: hyperosmotic response	4.60E-03
104	GO:0046685: response to arsenic-containing substance	5.22E-03
105	GO:0051865: protein autoubiquitination	5.22E-03
106	GO:0009617: response to bacterium	5.54E-03
107	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.85E-03
108	GO:0043067: regulation of programmed cell death	5.85E-03
109	GO:0006032: chitin catabolic process	6.51E-03
110	GO:0010629: negative regulation of gene expression	6.51E-03
111	GO:0055062: phosphate ion homeostasis	6.51E-03
112	GO:0006631: fatty acid metabolic process	6.58E-03
113	GO:0000272: polysaccharide catabolic process	7.20E-03
114	GO:0009750: response to fructose	7.20E-03
115	GO:0030148: sphingolipid biosynthetic process	7.20E-03
116	GO:0000038: very long-chain fatty acid metabolic process	7.20E-03
117	GO:0015706: nitrate transport	7.92E-03
118	GO:0012501: programmed cell death	7.92E-03
119	GO:0042742: defense response to bacterium	8.01E-03
120	GO:0031347: regulation of defense response	8.66E-03
121	GO:0006626: protein targeting to mitochondrion	8.66E-03
122	GO:0009738: abscisic acid-activated signaling pathway	8.71E-03
123	GO:0002237: response to molecule of bacterial origin	9.42E-03
124	GO:0006446: regulation of translational initiation	9.42E-03
125	GO:0009934: regulation of meristem structural organization	9.42E-03
126	GO:0010167: response to nitrate	1.02E-02
127	GO:0010053: root epidermal cell differentiation	1.02E-02
128	GO:0009737: response to abscisic acid	1.02E-02
129	GO:0009225: nucleotide-sugar metabolic process	1.02E-02
130	GO:0006952: defense response	1.06E-02
131	GO:0006417: regulation of translation	1.07E-02
132	GO:0006096: glycolytic process	1.14E-02
133	GO:0000027: ribosomal large subunit assembly	1.19E-02
134	GO:0009695: jasmonic acid biosynthetic process	1.27E-02
135	GO:0031408: oxylipin biosynthetic process	1.36E-02
136	GO:0009624: response to nematode	1.38E-02
137	GO:0018105: peptidyl-serine phosphorylation	1.42E-02
138	GO:0007005: mitochondrion organization	1.45E-02
139	GO:0080092: regulation of pollen tube growth	1.45E-02
140	GO:0006012: galactose metabolic process	1.54E-02
141	GO:0042127: regulation of cell proliferation	1.64E-02
142	GO:0009058: biosynthetic process	1.82E-02
143	GO:0042391: regulation of membrane potential	1.83E-02
144	GO:0010087: phloem or xylem histogenesis	1.83E-02
145	GO:0009790: embryo development	2.02E-02
146	GO:0006814: sodium ion transport	2.03E-02
147	GO:0042752: regulation of circadian rhythm	2.03E-02
148	GO:0009646: response to absence of light	2.03E-02
149	GO:0010183: pollen tube guidance	2.14E-02
150	GO:0006633: fatty acid biosynthetic process	2.17E-02
151	GO:0006413: translational initiation	2.22E-02
152	GO:0000302: response to reactive oxygen species	2.24E-02
153	GO:0010193: response to ozone	2.24E-02
154	GO:0006468: protein phosphorylation	2.24E-02
155	GO:0040008: regulation of growth	2.28E-02
156	GO:0030163: protein catabolic process	2.46E-02
157	GO:0010252: auxin homeostasis	2.57E-02
158	GO:0006904: vesicle docking involved in exocytosis	2.68E-02
159	GO:0009607: response to biotic stimulus	3.03E-02
160	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.03E-02
161	GO:0009627: systemic acquired resistance	3.15E-02
162	GO:0009793: embryo development ending in seed dormancy	3.35E-02
163	GO:0009611: response to wounding	3.51E-02
164	GO:0008219: cell death	3.52E-02
165	GO:0035556: intracellular signal transduction	3.65E-02
166	GO:0009407: toxin catabolic process	3.77E-02
167	GO:0010119: regulation of stomatal movement	3.90E-02
168	GO:0010043: response to zinc ion	3.90E-02
169	GO:0009860: pollen tube growth	3.96E-02
170	GO:0045893: positive regulation of transcription, DNA-templated	4.05E-02
171	GO:0016051: carbohydrate biosynthetic process	4.17E-02
172	GO:0009853: photorespiration	4.17E-02
173	GO:0009867: jasmonic acid mediated signaling pathway	4.17E-02
174	GO:0009723: response to ethylene	4.26E-02
175	GO:0006099: tricarboxylic acid cycle	4.30E-02
176	GO:0006839: mitochondrial transport	4.57E-02
177	GO:0006887: exocytosis	4.71E-02
178	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.71E-02
179	GO:0046777: protein autophosphorylation	4.86E-02
180	GO:0009640: photomorphogenesis	4.98E-02
181	GO:0051707: response to other organism	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0098808: mRNA cap binding	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0008777: acetylornithine deacetylase activity	0.00E+00
4	GO:0016504: peptidase activator activity	0.00E+00
5	GO:0004660: protein farnesyltransferase activity	0.00E+00
6	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
7	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
8	GO:0070577: lysine-acetylated histone binding	0.00E+00
9	GO:0102391: decanoate--CoA ligase activity	1.19E-04
10	GO:0004747: ribokinase activity	1.19E-04
11	GO:0004467: long-chain fatty acid-CoA ligase activity	1.57E-04
12	GO:0009055: electron carrier activity	1.98E-04
13	GO:0008865: fructokinase activity	2.00E-04
14	GO:0004321: fatty-acyl-CoA synthase activity	2.27E-04
15	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.27E-04
16	GO:0019707: protein-cysteine S-acyltransferase activity	2.27E-04
17	GO:0030955: potassium ion binding	3.56E-04
18	GO:0016844: strictosidine synthase activity	3.56E-04
19	GO:0004743: pyruvate kinase activity	3.56E-04
20	GO:0045140: inositol phosphoceramide synthase activity	5.05E-04
21	GO:0004061: arylformamidase activity	5.05E-04
22	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	5.05E-04
23	GO:0050736: O-malonyltransferase activity	5.05E-04
24	GO:0015036: disulfide oxidoreductase activity	5.05E-04
25	GO:0042937: tripeptide transporter activity	5.05E-04
26	GO:0003994: aconitate hydratase activity	5.05E-04
27	GO:0004817: cysteine-tRNA ligase activity	5.05E-04
28	GO:0015152: glucose-6-phosphate transmembrane transporter activity	5.05E-04
29	GO:0005315: inorganic phosphate transmembrane transporter activity	6.27E-04
30	GO:0031683: G-protein beta/gamma-subunit complex binding	8.21E-04
31	GO:0016805: dipeptidase activity	8.21E-04
32	GO:0071917: triose-phosphate transmembrane transporter activity	8.21E-04
33	GO:0001664: G-protein coupled receptor binding	8.21E-04
34	GO:0005093: Rab GDP-dissociation inhibitor activity	8.21E-04
35	GO:0008430: selenium binding	8.21E-04
36	GO:0003954: NADH dehydrogenase activity	9.67E-04
37	GO:0005524: ATP binding	1.11E-03
38	GO:0016301: kinase activity	1.28E-03
39	GO:0070628: proteasome binding	1.56E-03
40	GO:0015120: phosphoglycerate transmembrane transporter activity	1.56E-03
41	GO:0015368: calcium:cation antiporter activity	1.56E-03
42	GO:0042936: dipeptide transporter activity	1.56E-03
43	GO:0015369: calcium:proton antiporter activity	1.56E-03
44	GO:0004040: amidase activity	1.99E-03
45	GO:0005471: ATP:ADP antiporter activity	1.99E-03
46	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.99E-03
47	GO:0004356: glutamate-ammonia ligase activity	1.99E-03
48	GO:0005459: UDP-galactose transmembrane transporter activity	1.99E-03
49	GO:0015035: protein disulfide oxidoreductase activity	2.29E-03
50	GO:0047714: galactolipase activity	2.45E-03
51	GO:0048040: UDP-glucuronate decarboxylase activity	2.45E-03
52	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.45E-03
53	GO:0003978: UDP-glucose 4-epimerase activity	2.94E-03
54	GO:0070403: NAD+ binding	2.94E-03
55	GO:0004620: phospholipase activity	3.47E-03
56	GO:0008235: metalloexopeptidase activity	3.47E-03
57	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.75E-03
58	GO:0004683: calmodulin-dependent protein kinase activity	3.95E-03
59	GO:0052747: sinapyl alcohol dehydrogenase activity	4.02E-03
60	GO:0004311: farnesyltranstransferase activity	4.02E-03
61	GO:0015491: cation:cation antiporter activity	4.02E-03
62	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	4.60E-03
63	GO:0005516: calmodulin binding	4.77E-03
64	GO:0004222: metalloendopeptidase activity	4.82E-03
65	GO:0071949: FAD binding	5.22E-03
66	GO:0003678: DNA helicase activity	5.22E-03
67	GO:0016207: 4-coumarate-CoA ligase activity	5.22E-03
68	GO:0047617: acyl-CoA hydrolase activity	5.85E-03
69	GO:0015112: nitrate transmembrane transporter activity	5.85E-03
70	GO:0051539: 4 iron, 4 sulfur cluster binding	6.32E-03
71	GO:0004713: protein tyrosine kinase activity	6.51E-03
72	GO:0004568: chitinase activity	6.51E-03
73	GO:0004364: glutathione transferase activity	6.86E-03
74	GO:0005509: calcium ion binding	6.96E-03
75	GO:0008794: arsenate reductase (glutaredoxin) activity	7.20E-03
76	GO:0004177: aminopeptidase activity	7.20E-03
77	GO:0000287: magnesium ion binding	7.53E-03
78	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.92E-03
79	GO:0008378: galactosyltransferase activity	7.92E-03
80	GO:0000175: 3'-5'-exoribonuclease activity	8.66E-03
81	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.66E-03
82	GO:0004022: alcohol dehydrogenase (NAD) activity	8.66E-03
83	GO:0019888: protein phosphatase regulator activity	8.66E-03
84	GO:0043531: ADP binding	8.67E-03
85	GO:0004535: poly(A)-specific ribonuclease activity	9.42E-03
86	GO:0004175: endopeptidase activity	9.42E-03
87	GO:0008061: chitin binding	1.02E-02
88	GO:0004970: ionotropic glutamate receptor activity	1.02E-02
89	GO:0005217: intracellular ligand-gated ion channel activity	1.02E-02
90	GO:0030552: cAMP binding	1.02E-02
91	GO:0030553: cGMP binding	1.02E-02
92	GO:0051536: iron-sulfur cluster binding	1.19E-02
93	GO:0016740: transferase activity	1.24E-02
94	GO:0005216: ion channel activity	1.27E-02
95	GO:0004540: ribonuclease activity	1.36E-02
96	GO:0004298: threonine-type endopeptidase activity	1.36E-02
97	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.36E-02
98	GO:0008408: 3'-5' exonuclease activity	1.36E-02
99	GO:0004842: ubiquitin-protein transferase activity	1.40E-02
100	GO:0030246: carbohydrate binding	1.44E-02
101	GO:0003756: protein disulfide isomerase activity	1.64E-02
102	GO:0047134: protein-disulfide reductase activity	1.73E-02
103	GO:0030551: cyclic nucleotide binding	1.83E-02
104	GO:0005249: voltage-gated potassium channel activity	1.83E-02
105	GO:0050662: coenzyme binding	2.03E-02
106	GO:0004791: thioredoxin-disulfide reductase activity	2.03E-02
107	GO:0004674: protein serine/threonine kinase activity	2.04E-02
108	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.24E-02
109	GO:0008237: metallopeptidase activity	2.68E-02
110	GO:0003743: translation initiation factor activity	2.79E-02
111	GO:0016887: ATPase activity	2.88E-02
112	GO:0051213: dioxygenase activity	2.91E-02
113	GO:0004806: triglyceride lipase activity	3.27E-02
114	GO:0005096: GTPase activator activity	3.65E-02
115	GO:0030145: manganese ion binding	3.90E-02
116	GO:0005515: protein binding	3.92E-02
117	GO:0003697: single-stranded DNA binding	4.17E-02
118	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.17E-02
119	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.43E-02
120	GO:0061630: ubiquitin protein ligase activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005829: cytosol	9.24E-07
3	GO:0005783: endoplasmic reticulum	1.43E-04
4	GO:0005886: plasma membrane	1.58E-04
5	GO:0005965: protein farnesyltransferase complex	2.27E-04
6	GO:0030014: CCR4-NOT complex	2.27E-04
7	GO:0000138: Golgi trans cisterna	2.27E-04
8	GO:0031304: intrinsic component of mitochondrial inner membrane	5.05E-04
9	GO:0031314: extrinsic component of mitochondrial inner membrane	5.05E-04
10	GO:0030176: integral component of endoplasmic reticulum membrane	7.89E-04
11	GO:0070062: extracellular exosome	1.17E-03
12	GO:0031461: cullin-RING ubiquitin ligase complex	1.17E-03
13	GO:0005839: proteasome core complex	1.17E-03
14	GO:0005789: endoplasmic reticulum membrane	1.65E-03
15	GO:0016282: eukaryotic 43S preinitiation complex	2.45E-03
16	GO:0033290: eukaryotic 48S preinitiation complex	2.94E-03
17	GO:0030173: integral component of Golgi membrane	2.94E-03
18	GO:0000794: condensed nuclear chromosome	3.47E-03
19	GO:0005773: vacuole	3.68E-03
20	GO:0000326: protein storage vacuole	4.60E-03
21	GO:0019773: proteasome core complex, alpha-subunit complex	4.60E-03
22	GO:0008180: COP9 signalosome	5.22E-03
23	GO:0048471: perinuclear region of cytoplasm	7.20E-03
24	GO:0005794: Golgi apparatus	7.91E-03
25	GO:0031307: integral component of mitochondrial outer membrane	7.92E-03
26	GO:0031966: mitochondrial membrane	8.97E-03
27	GO:0005635: nuclear envelope	1.03E-02
28	GO:0005769: early endosome	1.10E-02
29	GO:0005777: peroxisome	1.13E-02
30	GO:0045271: respiratory chain complex I	1.27E-02
31	GO:0019898: extrinsic component of membrane	2.14E-02
32	GO:0016021: integral component of membrane	2.30E-02
33	GO:0000145: exocyst	2.35E-02
34	GO:0005788: endoplasmic reticulum lumen	3.03E-02
35	GO:0009707: chloroplast outer membrane	3.52E-02
36	GO:0000151: ubiquitin ligase complex	3.52E-02
37	GO:0005819: spindle	4.43E-02
38	GO:0005737: cytoplasm	4.50E-02