co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032780: negative regulation of ATPase activity	0.00E+00
2	GO:0006482: protein demethylation	0.00E+00
3	GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response	0.00E+00
4	GO:0006858: extracellular transport	0.00E+00
5	GO:0002376: immune system process	0.00E+00
6	GO:0039694: viral RNA genome replication	0.00E+00
7	GO:0010360: negative regulation of anion channel activity	0.00E+00
8	GO:0030149: sphingolipid catabolic process	0.00E+00
9	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
10	GO:0007141: male meiosis I	0.00E+00
11	GO:0006983: ER overload response	0.00E+00
12	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
13	GO:0048227: plasma membrane to endosome transport	0.00E+00
14	GO:0010398: xylogalacturonan metabolic process	0.00E+00
15	GO:1900425: negative regulation of defense response to bacterium	1.17E-04
16	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.17E-04
17	GO:0009819: drought recovery	2.66E-04
18	GO:0080120: CAAX-box protein maturation	2.75E-04
19	GO:0098710: guanine import across plasma membrane	2.75E-04
20	GO:0048508: embryonic meristem development	2.75E-04
21	GO:0071586: CAAX-box protein processing	2.75E-04
22	GO:0006805: xenobiotic metabolic process	2.75E-04
23	GO:0006422: aspartyl-tRNA aminoacylation	2.75E-04
24	GO:0006481: C-terminal protein methylation	2.75E-04
25	GO:1990022: RNA polymerase III complex localization to nucleus	2.75E-04
26	GO:0044376: RNA polymerase II complex import to nucleus	2.75E-04
27	GO:0035344: hypoxanthine transport	2.75E-04
28	GO:1902361: mitochondrial pyruvate transmembrane transport	2.75E-04
29	GO:0010265: SCF complex assembly	2.75E-04
30	GO:0098721: uracil import across plasma membrane	2.75E-04
31	GO:0098702: adenine import across plasma membrane	2.75E-04
32	GO:0030968: endoplasmic reticulum unfolded protein response	3.27E-04
33	GO:0000302: response to reactive oxygen species	3.29E-04
34	GO:0007264: small GTPase mediated signal transduction	3.59E-04
35	GO:0046685: response to arsenic-containing substance	3.94E-04
36	GO:0043069: negative regulation of programmed cell death	5.46E-04
37	GO:0015914: phospholipid transport	6.04E-04
38	GO:0009915: phloem sucrose loading	6.04E-04
39	GO:0006672: ceramide metabolic process	6.04E-04
40	GO:0006212: uracil catabolic process	6.04E-04
41	GO:0043066: negative regulation of apoptotic process	6.04E-04
42	GO:0019483: beta-alanine biosynthetic process	6.04E-04
43	GO:0006850: mitochondrial pyruvate transport	6.04E-04
44	GO:0019752: carboxylic acid metabolic process	6.04E-04
45	GO:0009945: radial axis specification	6.04E-04
46	GO:0051258: protein polymerization	6.04E-04
47	GO:0019441: tryptophan catabolic process to kynurenine	6.04E-04
48	GO:0009156: ribonucleoside monophosphate biosynthetic process	6.04E-04
49	GO:0031648: protein destabilization	6.04E-04
50	GO:0015706: nitrate transport	7.20E-04
51	GO:0009738: abscisic acid-activated signaling pathway	9.33E-04
52	GO:0009410: response to xenobiotic stimulus	9.79E-04
53	GO:0048281: inflorescence morphogenesis	9.79E-04
54	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	9.79E-04
55	GO:0010498: proteasomal protein catabolic process	9.79E-04
56	GO:0010359: regulation of anion channel activity	9.79E-04
57	GO:0061158: 3'-UTR-mediated mRNA destabilization	9.79E-04
58	GO:0080055: low-affinity nitrate transport	9.79E-04
59	GO:0010288: response to lead ion	9.79E-04
60	GO:0051176: positive regulation of sulfur metabolic process	9.79E-04
61	GO:0048194: Golgi vesicle budding	1.40E-03
62	GO:0010255: glucose mediated signaling pathway	1.40E-03
63	GO:0006986: response to unfolded protein	1.40E-03
64	GO:0001676: long-chain fatty acid metabolic process	1.40E-03
65	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.40E-03
66	GO:0030433: ubiquitin-dependent ERAD pathway	1.66E-03
67	GO:0033320: UDP-D-xylose biosynthetic process	1.87E-03
68	GO:0042991: transcription factor import into nucleus	1.87E-03
69	GO:0009165: nucleotide biosynthetic process	1.87E-03
70	GO:0007029: endoplasmic reticulum organization	2.39E-03
71	GO:0018344: protein geranylgeranylation	2.39E-03
72	GO:0030308: negative regulation of cell growth	2.39E-03
73	GO:0006751: glutathione catabolic process	2.95E-03
74	GO:0048232: male gamete generation	2.95E-03
75	GO:0070814: hydrogen sulfide biosynthetic process	2.95E-03
76	GO:0042732: D-xylose metabolic process	2.95E-03
77	GO:1902456: regulation of stomatal opening	2.95E-03
78	GO:0035435: phosphate ion transmembrane transport	2.95E-03
79	GO:0046686: response to cadmium ion	3.17E-03
80	GO:0010200: response to chitin	3.40E-03
81	GO:0009942: longitudinal axis specification	3.55E-03
82	GO:0010189: vitamin E biosynthetic process	3.55E-03
83	GO:0042742: defense response to bacterium	4.02E-03
84	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.19E-03
85	GO:0043090: amino acid import	4.19E-03
86	GO:0070370: cellular heat acclimation	4.19E-03
87	GO:1902074: response to salt	4.19E-03
88	GO:0045454: cell redox homeostasis	4.25E-03
89	GO:0016559: peroxisome fission	4.86E-03
90	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.86E-03
91	GO:0006605: protein targeting	4.86E-03
92	GO:1900150: regulation of defense response to fungus	4.86E-03
93	GO:2000070: regulation of response to water deprivation	4.86E-03
94	GO:0042128: nitrate assimilation	4.93E-03
95	GO:0009790: embryo development	5.08E-03
96	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	5.57E-03
97	GO:0043562: cellular response to nitrogen levels	5.57E-03
98	GO:0010150: leaf senescence	6.29E-03
99	GO:0009821: alkaloid biosynthetic process	6.31E-03
100	GO:0090333: regulation of stomatal closure	6.31E-03
101	GO:0015031: protein transport	6.43E-03
102	GO:0010629: negative regulation of gene expression	7.90E-03
103	GO:0006995: cellular response to nitrogen starvation	7.90E-03
104	GO:0051026: chiasma assembly	7.90E-03
105	GO:0000103: sulfate assimilation	7.90E-03
106	GO:0006468: protein phosphorylation	8.27E-03
107	GO:0000038: very long-chain fatty acid metabolic process	8.74E-03
108	GO:0000266: mitochondrial fission	9.61E-03
109	GO:0009266: response to temperature stimulus	1.14E-02
110	GO:0034605: cellular response to heat	1.14E-02
111	GO:0007034: vacuolar transport	1.14E-02
112	GO:0006970: response to osmotic stress	1.21E-02
113	GO:0009860: pollen tube growth	1.21E-02
114	GO:0009225: nucleotide-sugar metabolic process	1.24E-02
115	GO:0010167: response to nitrate	1.24E-02
116	GO:0070588: calcium ion transmembrane transport	1.24E-02
117	GO:0071555: cell wall organization	1.30E-02
118	GO:0034976: response to endoplasmic reticulum stress	1.34E-02
119	GO:0006636: unsaturated fatty acid biosynthetic process	1.34E-02
120	GO:0009116: nucleoside metabolic process	1.44E-02
121	GO:0000027: ribosomal large subunit assembly	1.44E-02
122	GO:0009863: salicylic acid mediated signaling pathway	1.44E-02
123	GO:2000377: regulation of reactive oxygen species metabolic process	1.44E-02
124	GO:0006874: cellular calcium ion homeostasis	1.55E-02
125	GO:0048367: shoot system development	1.56E-02
126	GO:0046777: protein autophosphorylation	1.57E-02
127	GO:0009651: response to salt stress	1.64E-02
128	GO:0009814: defense response, incompatible interaction	1.76E-02
129	GO:0016226: iron-sulfur cluster assembly	1.76E-02
130	GO:0009553: embryo sac development	1.76E-02
131	GO:0007131: reciprocal meiotic recombination	1.76E-02
132	GO:0007005: mitochondrion organization	1.76E-02
133	GO:0031348: negative regulation of defense response	1.76E-02
134	GO:0080092: regulation of pollen tube growth	1.76E-02
135	GO:0018105: peptidyl-serine phosphorylation	1.87E-02
136	GO:0006012: galactose metabolic process	1.88E-02
137	GO:0001944: vasculature development	1.88E-02
138	GO:0009625: response to insect	1.88E-02
139	GO:0010091: trichome branching	1.99E-02
140	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.11E-02
141	GO:0042631: cellular response to water deprivation	2.23E-02
142	GO:0010501: RNA secondary structure unwinding	2.23E-02
143	GO:0010087: phloem or xylem histogenesis	2.23E-02
144	GO:0008360: regulation of cell shape	2.35E-02
145	GO:0006520: cellular amino acid metabolic process	2.35E-02
146	GO:0045489: pectin biosynthetic process	2.35E-02
147	GO:0042752: regulation of circadian rhythm	2.47E-02
148	GO:0009646: response to absence of light	2.47E-02
149	GO:0006623: protein targeting to vacuole	2.60E-02
150	GO:0010183: pollen tube guidance	2.60E-02
151	GO:0048825: cotyledon development	2.60E-02
152	GO:0002229: defense response to oomycetes	2.73E-02
153	GO:0010193: response to ozone	2.73E-02
154	GO:0006914: autophagy	3.13E-02
155	GO:0006310: DNA recombination	3.13E-02
156	GO:0009873: ethylene-activated signaling pathway	3.24E-02
157	GO:0006904: vesicle docking involved in exocytosis	3.27E-02
158	GO:0051607: defense response to virus	3.41E-02
159	GO:0001666: response to hypoxia	3.55E-02
160	GO:0009615: response to virus	3.55E-02
161	GO:0009607: response to biotic stimulus	3.69E-02
162	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.69E-02
163	GO:0009414: response to water deprivation	3.82E-02
164	GO:0008219: cell death	4.29E-02
165	GO:0006499: N-terminal protein myristoylation	4.59E-02
166	GO:0009407: toxin catabolic process	4.59E-02
167	GO:0009737: response to abscisic acid	4.60E-02
168	GO:0010043: response to zinc ion	4.75E-02
169	GO:0010119: regulation of stomatal movement	4.75E-02
170	GO:0009555: pollen development	4.79E-02
171	GO:0006351: transcription, DNA-templated	4.85E-02
172	GO:0006865: amino acid transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
2	GO:0015370: solute:sodium symporter activity	0.00E+00
3	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
4	GO:0050220: prostaglandin-E synthase activity	0.00E+00
5	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
6	GO:0051723: protein methylesterase activity	0.00E+00
7	GO:0004157: dihydropyrimidinase activity	0.00E+00
8	GO:0042030: ATPase inhibitor activity	0.00E+00
9	GO:0052692: raffinose alpha-galactosidase activity	1.24E-05
10	GO:0004557: alpha-galactosidase activity	1.24E-05
11	GO:0005524: ATP binding	7.58E-05
12	GO:0036402: proteasome-activating ATPase activity	1.17E-04
13	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.75E-04
14	GO:0010013: N-1-naphthylphthalamic acid binding	2.75E-04
15	GO:0004815: aspartate-tRNA ligase activity	2.75E-04
16	GO:0015208: guanine transmembrane transporter activity	2.75E-04
17	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	2.75E-04
18	GO:0015294: solute:cation symporter activity	2.75E-04
19	GO:0015207: adenine transmembrane transporter activity	2.75E-04
20	GO:0071949: FAD binding	3.94E-04
21	GO:0005515: protein binding	4.91E-04
22	GO:0004061: arylformamidase activity	6.04E-04
23	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	6.04E-04
24	GO:0032791: lead ion binding	6.04E-04
25	GO:0008794: arsenate reductase (glutaredoxin) activity	6.30E-04
26	GO:0080054: low-affinity nitrate transmembrane transporter activity	9.79E-04
27	GO:0005093: Rab GDP-dissociation inhibitor activity	9.79E-04
28	GO:0008430: selenium binding	9.79E-04
29	GO:0003840: gamma-glutamyltransferase activity	9.79E-04
30	GO:0036374: glutathione hydrolase activity	9.79E-04
31	GO:0050833: pyruvate transmembrane transporter activity	9.79E-04
32	GO:0004663: Rab geranylgeranyltransferase activity	9.79E-04
33	GO:0004781: sulfate adenylyltransferase (ATP) activity	9.79E-04
34	GO:0017025: TBP-class protein binding	1.02E-03
35	GO:0031176: endo-1,4-beta-xylanase activity	1.40E-03
36	GO:0004749: ribose phosphate diphosphokinase activity	1.40E-03
37	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.40E-03
38	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.40E-03
39	GO:0016301: kinase activity	1.54E-03
40	GO:0015293: symporter activity	1.59E-03
41	GO:0015210: uracil transmembrane transporter activity	1.87E-03
42	GO:0000062: fatty-acyl-CoA binding	1.87E-03
43	GO:0004301: epoxide hydrolase activity	1.87E-03
44	GO:0015204: urea transmembrane transporter activity	1.87E-03
45	GO:0004659: prenyltransferase activity	1.87E-03
46	GO:0005516: calmodulin binding	2.23E-03
47	GO:0004040: amidase activity	2.39E-03
48	GO:0005496: steroid binding	2.39E-03
49	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.39E-03
50	GO:0030976: thiamine pyrophosphate binding	2.95E-03
51	GO:0048040: UDP-glucuronate decarboxylase activity	2.95E-03
52	GO:0031593: polyubiquitin binding	2.95E-03
53	GO:0035252: UDP-xylosyltransferase activity	2.95E-03
54	GO:0016887: ATPase activity	2.99E-03
55	GO:0015035: protein disulfide oxidoreductase activity	3.25E-03
56	GO:0070403: NAD+ binding	3.55E-03
57	GO:0102391: decanoate--CoA ligase activity	3.55E-03
58	GO:0004012: phospholipid-translocating ATPase activity	3.55E-03
59	GO:0004602: glutathione peroxidase activity	3.55E-03
60	GO:0003978: UDP-glucose 4-epimerase activity	3.55E-03
61	GO:0004656: procollagen-proline 4-dioxygenase activity	3.55E-03
62	GO:0016831: carboxy-lyase activity	4.19E-03
63	GO:0043295: glutathione binding	4.19E-03
64	GO:0004467: long-chain fatty acid-CoA ligase activity	4.19E-03
65	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.93E-03
66	GO:0004683: calmodulin-dependent protein kinase activity	5.20E-03
67	GO:0003843: 1,3-beta-D-glucan synthase activity	5.57E-03
68	GO:0003678: DNA helicase activity	6.31E-03
69	GO:0043565: sequence-specific DNA binding	6.82E-03
70	GO:0016844: strictosidine synthase activity	7.09E-03
71	GO:0015112: nitrate transmembrane transporter activity	7.09E-03
72	GO:0004743: pyruvate kinase activity	7.09E-03
73	GO:0030955: potassium ion binding	7.09E-03
74	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.30E-03
75	GO:0008047: enzyme activator activity	7.90E-03
76	GO:0004713: protein tyrosine kinase activity	7.90E-03
77	GO:0005543: phospholipid binding	8.74E-03
78	GO:0001054: RNA polymerase I activity	8.74E-03
79	GO:0004177: aminopeptidase activity	8.74E-03
80	GO:0004364: glutathione transferase activity	9.05E-03
81	GO:0005388: calcium-transporting ATPase activity	1.05E-02
82	GO:0000175: 3'-5'-exoribonuclease activity	1.05E-02
83	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.05E-02
84	GO:0005315: inorganic phosphate transmembrane transporter activity	1.05E-02
85	GO:0000287: magnesium ion binding	1.07E-02
86	GO:0005509: calcium ion binding	1.13E-02
87	GO:0004175: endopeptidase activity	1.14E-02
88	GO:0004535: poly(A)-specific ribonuclease activity	1.14E-02
89	GO:0004190: aspartic-type endopeptidase activity	1.24E-02
90	GO:0004970: ionotropic glutamate receptor activity	1.24E-02
91	GO:0005217: intracellular ligand-gated ion channel activity	1.24E-02
92	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.27E-02
93	GO:0031418: L-ascorbic acid binding	1.44E-02
94	GO:0003954: NADH dehydrogenase activity	1.44E-02
95	GO:0043130: ubiquitin binding	1.44E-02
96	GO:0004497: monooxygenase activity	1.44E-02
97	GO:0004674: protein serine/threonine kinase activity	1.53E-02
98	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.65E-02
99	GO:0008408: 3'-5' exonuclease activity	1.65E-02
100	GO:0004540: ribonuclease activity	1.65E-02
101	GO:0022857: transmembrane transporter activity	1.71E-02
102	GO:0016787: hydrolase activity	1.76E-02
103	GO:0008026: ATP-dependent helicase activity	1.93E-02
104	GO:0003727: single-stranded RNA binding	1.99E-02
105	GO:0047134: protein-disulfide reductase activity	2.11E-02
106	GO:0003924: GTPase activity	2.36E-02
107	GO:0004791: thioredoxin-disulfide reductase activity	2.47E-02
108	GO:0009055: electron carrier activity	2.58E-02
109	GO:0008483: transaminase activity	3.27E-02
110	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.27E-02
111	GO:0016597: amino acid binding	3.41E-02
112	GO:0051213: dioxygenase activity	3.55E-02
113	GO:0042802: identical protein binding	3.99E-02
114	GO:0004004: ATP-dependent RNA helicase activity	3.99E-02
115	GO:0005096: GTPase activator activity	4.44E-02
116	GO:0003824: catalytic activity	4.51E-02
117	GO:0005215: transporter activity	4.56E-02
118	GO:0004222: metalloendopeptidase activity	4.59E-02
119	GO:0050897: cobalt ion binding	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0045335: phagocytic vesicle	0.00E+00
3	GO:0005886: plasma membrane	5.32E-06
4	GO:0005783: endoplasmic reticulum	1.11E-05
5	GO:0005789: endoplasmic reticulum membrane	1.45E-05
6	GO:0005829: cytosol	8.84E-05
7	GO:0031597: cytosolic proteasome complex	1.60E-04
8	GO:0031595: nuclear proteasome complex	2.10E-04
9	GO:0030014: CCR4-NOT complex	2.75E-04
10	GO:0005778: peroxisomal membrane	4.58E-04
11	GO:0008540: proteasome regulatory particle, base subcomplex	4.67E-04
12	GO:0016021: integral component of membrane	5.81E-04
13	GO:0031304: intrinsic component of mitochondrial inner membrane	6.04E-04
14	GO:0005782: peroxisomal matrix	9.79E-04
15	GO:0030139: endocytic vesicle	9.79E-04
16	GO:0005773: vacuole	1.16E-03
17	GO:0031461: cullin-RING ubiquitin ligase complex	1.40E-03
18	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.40E-03
19	GO:0030658: transport vesicle membrane	1.40E-03
20	GO:0070062: extracellular exosome	1.40E-03
21	GO:0016020: membrane	2.02E-03
22	GO:0005635: nuclear envelope	2.18E-03
23	GO:0016272: prefoldin complex	3.55E-03
24	GO:0005794: Golgi apparatus	4.19E-03
25	GO:0000794: condensed nuclear chromosome	4.19E-03
26	GO:0031305: integral component of mitochondrial inner membrane	4.86E-03
27	GO:0009514: glyoxysome	5.57E-03
28	GO:0000148: 1,3-beta-D-glucan synthase complex	5.57E-03
29	GO:0005736: DNA-directed RNA polymerase I complex	6.31E-03
30	GO:0017119: Golgi transport complex	7.90E-03
31	GO:0005819: spindle	7.98E-03
32	GO:0031902: late endosome membrane	8.68E-03
33	GO:0048471: perinuclear region of cytoplasm	8.74E-03
34	GO:0031307: integral component of mitochondrial outer membrane	9.61E-03
35	GO:0030176: integral component of endoplasmic reticulum membrane	1.24E-02
36	GO:0000502: proteasome complex	1.27E-02
37	GO:0043234: protein complex	1.34E-02
38	GO:0005741: mitochondrial outer membrane	1.65E-02
39	GO:0005777: peroxisome	1.71E-02
40	GO:0000790: nuclear chromatin	2.11E-02
41	GO:0009524: phragmoplast	2.40E-02
42	GO:0009504: cell plate	2.60E-02
43	GO:0005802: trans-Golgi network	2.81E-02
44	GO:0000145: exocyst	2.86E-02
45	GO:0005768: endosome	3.39E-02
46	GO:0005887: integral component of plasma membrane	3.45E-02
47	GO:0000151: ubiquitin ligase complex	4.29E-02
48	GO:0048046: apoplast	4.69E-02