Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G00360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010394: homogalacturonan metabolic process0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0009773: photosynthetic electron transport in photosystem I1.79E-10
7GO:0015979: photosynthesis9.19E-07
8GO:0009658: chloroplast organization2.60E-06
9GO:1902326: positive regulation of chlorophyll biosynthetic process5.51E-06
10GO:0030388: fructose 1,6-bisphosphate metabolic process5.51E-06
11GO:0010275: NAD(P)H dehydrogenase complex assembly5.51E-06
12GO:0009657: plastid organization1.66E-05
13GO:0032544: plastid translation1.66E-05
14GO:0071482: cellular response to light stimulus1.66E-05
15GO:0006000: fructose metabolic process1.94E-05
16GO:0042335: cuticle development2.42E-05
17GO:2001141: regulation of RNA biosynthetic process4.29E-05
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.29E-05
19GO:0006352: DNA-templated transcription, initiation5.04E-05
20GO:0006546: glycine catabolic process7.62E-05
21GO:0009767: photosynthetic electron transport chain7.71E-05
22GO:0010207: photosystem II assembly9.31E-05
23GO:0019253: reductive pentose-phosphate cycle9.31E-05
24GO:0010025: wax biosynthetic process1.30E-04
25GO:0018298: protein-chromophore linkage1.42E-04
26GO:0006086: acetyl-CoA biosynthetic process from pyruvate1.72E-04
27GO:0042549: photosystem II stabilization1.72E-04
28GO:1901259: chloroplast rRNA processing2.33E-04
29GO:0070509: calcium ion import3.50E-04
30GO:0007263: nitric oxide mediated signal transduction3.50E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process3.50E-04
32GO:1904964: positive regulation of phytol biosynthetic process3.50E-04
33GO:0033481: galacturonate biosynthetic process3.50E-04
34GO:0045488: pectin metabolic process3.50E-04
35GO:0071588: hydrogen peroxide mediated signaling pathway3.50E-04
36GO:0048564: photosystem I assembly3.80E-04
37GO:0006002: fructose 6-phosphate metabolic process4.65E-04
38GO:0000373: Group II intron splicing5.58E-04
39GO:0009409: response to cold5.69E-04
40GO:0042761: very long-chain fatty acid biosynthetic process6.60E-04
41GO:0006810: transport7.05E-04
42GO:0015786: UDP-glucose transport7.62E-04
43GO:1904143: positive regulation of carotenoid biosynthetic process7.62E-04
44GO:0080183: response to photooxidative stress7.62E-04
45GO:0046686: response to cadmium ion8.23E-04
46GO:0071555: cell wall organization8.38E-04
47GO:0006415: translational termination8.86E-04
48GO:0000038: very long-chain fatty acid metabolic process8.86E-04
49GO:0006094: gluconeogenesis1.14E-03
50GO:0005986: sucrose biosynthetic process1.14E-03
51GO:0006518: peptide metabolic process1.23E-03
52GO:0009062: fatty acid catabolic process1.23E-03
53GO:0006696: ergosterol biosynthetic process1.23E-03
54GO:0015783: GDP-fucose transport1.23E-03
55GO:0090506: axillary shoot meristem initiation1.23E-03
56GO:0010020: chloroplast fission1.29E-03
57GO:0009833: plant-type primary cell wall biogenesis1.60E-03
58GO:0009735: response to cytokinin1.69E-03
59GO:0072334: UDP-galactose transmembrane transport1.78E-03
60GO:0043572: plastid fission1.78E-03
61GO:0016556: mRNA modification1.78E-03
62GO:0009768: photosynthesis, light harvesting in photosystem I1.96E-03
63GO:0007017: microtubule-based process1.96E-03
64GO:0006869: lipid transport2.11E-03
65GO:0080092: regulation of pollen tube growth2.36E-03
66GO:0045727: positive regulation of translation2.38E-03
67GO:0031122: cytoplasmic microtubule organization2.38E-03
68GO:0071483: cellular response to blue light2.38E-03
69GO:0019464: glycine decarboxylation via glycine cleavage system2.38E-03
70GO:0016117: carotenoid biosynthetic process3.03E-03
71GO:0080110: sporopollenin biosynthetic process3.05E-03
72GO:0006461: protein complex assembly3.05E-03
73GO:0055114: oxidation-reduction process3.50E-03
74GO:0009741: response to brassinosteroid3.53E-03
75GO:0009913: epidermal cell differentiation3.76E-03
76GO:0010358: leaf shaping3.76E-03
77GO:0010190: cytochrome b6f complex assembly3.76E-03
78GO:0006014: D-ribose metabolic process3.76E-03
79GO:0010304: PSII associated light-harvesting complex II catabolic process3.76E-03
80GO:0006096: glycolytic process3.89E-03
81GO:0019252: starch biosynthetic process4.07E-03
82GO:0006458: 'de novo' protein folding4.54E-03
83GO:0010067: procambium histogenesis4.54E-03
84GO:0042026: protein refolding4.54E-03
85GO:0030488: tRNA methylation4.54E-03
86GO:0010019: chloroplast-nucleus signaling pathway4.54E-03
87GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.54E-03
88GO:0009955: adaxial/abaxial pattern specification4.54E-03
89GO:0010196: nonphotochemical quenching5.36E-03
90GO:0009645: response to low light intensity stimulus5.36E-03
91GO:0006400: tRNA modification5.36E-03
92GO:0050829: defense response to Gram-negative bacterium5.36E-03
93GO:0080167: response to karrikin5.57E-03
94GO:0008610: lipid biosynthetic process6.22E-03
95GO:0007155: cell adhesion6.22E-03
96GO:0009416: response to light stimulus7.10E-03
97GO:0017004: cytochrome complex assembly7.14E-03
98GO:0006075: (1->3)-beta-D-glucan biosynthetic process7.14E-03
99GO:0015995: chlorophyll biosynthetic process7.43E-03
100GO:0010206: photosystem II repair8.10E-03
101GO:0000902: cell morphogenesis8.10E-03
102GO:0030244: cellulose biosynthetic process8.23E-03
103GO:0006633: fatty acid biosynthetic process8.79E-03
104GO:1900865: chloroplast RNA modification9.10E-03
105GO:0010205: photoinhibition9.10E-03
106GO:0006535: cysteine biosynthetic process from serine1.01E-02
107GO:0019538: protein metabolic process1.01E-02
108GO:0045036: protein targeting to chloroplast1.01E-02
109GO:0010192: mucilage biosynthetic process1.01E-02
110GO:0016051: carbohydrate biosynthetic process1.05E-02
111GO:0009637: response to blue light1.05E-02
112GO:0019684: photosynthesis, light reaction1.12E-02
113GO:0000272: polysaccharide catabolic process1.12E-02
114GO:0018119: peptidyl-cysteine S-nitrosylation1.12E-02
115GO:0006006: glucose metabolic process1.35E-02
116GO:0010114: response to red light1.35E-02
117GO:0009744: response to sucrose1.35E-02
118GO:0009725: response to hormone1.35E-02
119GO:0010143: cutin biosynthetic process1.48E-02
120GO:0010223: secondary shoot formation1.48E-02
121GO:0005985: sucrose metabolic process1.60E-02
122GO:0090351: seedling development1.60E-02
123GO:0009969: xyloglucan biosynthetic process1.60E-02
124GO:0009225: nucleotide-sugar metabolic process1.60E-02
125GO:0009826: unidimensional cell growth1.65E-02
126GO:0019762: glucosinolate catabolic process1.73E-02
127GO:0009809: lignin biosynthetic process1.83E-02
128GO:0019344: cysteine biosynthetic process1.86E-02
129GO:0006418: tRNA aminoacylation for protein translation2.00E-02
130GO:0009695: jasmonic acid biosynthetic process2.00E-02
131GO:0061077: chaperone-mediated protein folding2.13E-02
132GO:0031408: oxylipin biosynthetic process2.13E-02
133GO:0009626: plant-type hypersensitive response2.30E-02
134GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.37E-02
135GO:0009294: DNA mediated transformation2.42E-02
136GO:0040007: growth2.42E-02
137GO:0001944: vasculature development2.42E-02
138GO:0019722: calcium-mediated signaling2.57E-02
139GO:0010089: xylem development2.57E-02
140GO:0010584: pollen exine formation2.57E-02
141GO:0042631: cellular response to water deprivation2.88E-02
142GO:0042391: regulation of membrane potential2.88E-02
143GO:0010087: phloem or xylem histogenesis2.88E-02
144GO:0008360: regulation of cell shape3.04E-02
145GO:0045489: pectin biosynthetic process3.04E-02
146GO:0048868: pollen tube development3.04E-02
147GO:0010268: brassinosteroid homeostasis3.04E-02
148GO:0006814: sodium ion transport3.20E-02
149GO:0009646: response to absence of light3.20E-02
150GO:0009791: post-embryonic development3.36E-02
151GO:0008654: phospholipid biosynthetic process3.36E-02
152GO:0080156: mitochondrial mRNA modification3.53E-02
153GO:0000302: response to reactive oxygen species3.53E-02
154GO:0006635: fatty acid beta-oxidation3.53E-02
155GO:0016132: brassinosteroid biosynthetic process3.53E-02
156GO:0010583: response to cyclopentenone3.70E-02
157GO:0032502: developmental process3.70E-02
158GO:0042744: hydrogen peroxide catabolic process3.71E-02
159GO:0030163: protein catabolic process3.87E-02
160GO:0010090: trichome morphogenesis3.87E-02
161GO:0009753: response to jasmonic acid4.01E-02
162GO:0016125: sterol metabolic process4.04E-02
163GO:0010286: heat acclimation4.22E-02
164GO:0071805: potassium ion transmembrane transport4.22E-02
165GO:0007267: cell-cell signaling4.22E-02
166GO:0007623: circadian rhythm4.48E-02
167GO:0010027: thylakoid membrane organization4.58E-02
168GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.77E-02
169GO:0009816: defense response to bacterium, incompatible interaction4.77E-02
170GO:0042128: nitrate assimilation4.95E-02
RankGO TermAdjusted P value
1GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0046408: chlorophyll synthetase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
8GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
9GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0016987: sigma factor activity6.41E-07
12GO:0001053: plastid sigma factor activity6.41E-07
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.51E-06
14GO:0004222: metalloendopeptidase activity1.30E-05
15GO:0004148: dihydrolipoyl dehydrogenase activity1.94E-05
16GO:0016149: translation release factor activity, codon specific4.29E-05
17GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.62E-05
18GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity7.62E-05
19GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.33E-04
20GO:0009496: plastoquinol--plastocyanin reductase activity3.50E-04
21GO:0008568: microtubule-severing ATPase activity3.50E-04
22GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.50E-04
23GO:0004321: fatty-acyl-CoA synthase activity3.50E-04
24GO:0003867: 4-aminobutyrate transaminase activity3.50E-04
25GO:0051996: squalene synthase activity3.50E-04
26GO:0030941: chloroplast targeting sequence binding3.50E-04
27GO:0005221: intracellular cyclic nucleotide activated cation channel activity3.50E-04
28GO:0010012: steroid 22-alpha hydroxylase activity3.50E-04
29GO:0008809: carnitine racemase activity3.50E-04
30GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.50E-04
31GO:0052747: sinapyl alcohol dehydrogenase activity3.80E-04
32GO:0004033: aldo-keto reductase (NADP) activity3.80E-04
33GO:0003747: translation release factor activity5.58E-04
34GO:0008237: metallopeptidase activity7.18E-04
35GO:0008805: carbon-monoxide oxygenase activity7.62E-04
36GO:0004802: transketolase activity7.62E-04
37GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.62E-04
38GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.62E-04
39GO:0008967: phosphoglycolate phosphatase activity7.62E-04
40GO:0050017: L-3-cyanoalanine synthase activity7.62E-04
41GO:0010297: heteropolysaccharide binding7.62E-04
42GO:0004047: aminomethyltransferase activity7.62E-04
43GO:0005089: Rho guanyl-nucleotide exchange factor activity8.86E-04
44GO:0016168: chlorophyll binding8.91E-04
45GO:0045551: cinnamyl-alcohol dehydrogenase activity1.01E-03
46GO:0031072: heat shock protein binding1.14E-03
47GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.23E-03
48GO:0003913: DNA photolyase activity1.23E-03
49GO:0002161: aminoacyl-tRNA editing activity1.23E-03
50GO:0030267: glyoxylate reductase (NADP) activity1.23E-03
51GO:0005457: GDP-fucose transmembrane transporter activity1.23E-03
52GO:0019843: rRNA binding1.26E-03
53GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.60E-03
54GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.60E-03
55GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.60E-03
56GO:0031409: pigment binding1.60E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity1.78E-03
58GO:0005460: UDP-glucose transmembrane transporter activity1.78E-03
59GO:0004165: dodecenoyl-CoA delta-isomerase activity1.78E-03
60GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.78E-03
61GO:0008508: bile acid:sodium symporter activity1.78E-03
62GO:0015079: potassium ion transmembrane transporter activity1.96E-03
63GO:0004176: ATP-dependent peptidase activity2.16E-03
64GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.38E-03
65GO:0050378: UDP-glucuronate 4-epimerase activity2.38E-03
66GO:0043495: protein anchor2.38E-03
67GO:0051537: 2 iron, 2 sulfur cluster binding2.38E-03
68GO:0005319: lipid transporter activity2.38E-03
69GO:0051861: glycolipid binding2.38E-03
70GO:0005459: UDP-galactose transmembrane transporter activity3.05E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor3.05E-03
72GO:0008374: O-acyltransferase activity3.05E-03
73GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.15E-03
74GO:0003824: catalytic activity3.24E-03
75GO:0004130: cytochrome-c peroxidase activity3.76E-03
76GO:0016688: L-ascorbate peroxidase activity3.76E-03
77GO:0042578: phosphoric ester hydrolase activity3.76E-03
78GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.76E-03
79GO:0080030: methyl indole-3-acetate esterase activity3.76E-03
80GO:0050662: coenzyme binding3.79E-03
81GO:0048038: quinone binding4.36E-03
82GO:0051753: mannan synthase activity4.54E-03
83GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.54E-03
84GO:0004747: ribokinase activity4.54E-03
85GO:0005261: cation channel activity4.54E-03
86GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.54E-03
87GO:0005242: inward rectifier potassium channel activity4.54E-03
88GO:0004124: cysteine synthase activity4.54E-03
89GO:0051920: peroxiredoxin activity4.54E-03
90GO:0008289: lipid binding4.64E-03
91GO:0051082: unfolded protein binding4.93E-03
92GO:0016746: transferase activity, transferring acyl groups5.12E-03
93GO:0016759: cellulose synthase activity5.28E-03
94GO:0009881: photoreceptor activity5.36E-03
95GO:0019899: enzyme binding5.36E-03
96GO:0005200: structural constituent of cytoskeleton5.61E-03
97GO:0008865: fructokinase activity6.22E-03
98GO:0016209: antioxidant activity6.22E-03
99GO:0003843: 1,3-beta-D-glucan synthase activity7.14E-03
100GO:0016207: 4-coumarate-CoA ligase activity8.10E-03
101GO:0016740: transferase activity1.00E-02
102GO:0003924: GTPase activity1.01E-02
103GO:0030234: enzyme regulator activity1.01E-02
104GO:0015386: potassium:proton antiporter activity1.12E-02
105GO:0009055: electron carrier activity1.12E-02
106GO:0044183: protein binding involved in protein folding1.12E-02
107GO:0047372: acylglycerol lipase activity1.12E-02
108GO:0000049: tRNA binding1.24E-02
109GO:0008378: galactosyltransferase activity1.24E-02
110GO:0046872: metal ion binding1.30E-02
111GO:0004565: beta-galactosidase activity1.35E-02
112GO:0005262: calcium channel activity1.35E-02
113GO:0016491: oxidoreductase activity1.39E-02
114GO:0008083: growth factor activity1.48E-02
115GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.48E-02
116GO:0005198: structural molecule activity1.52E-02
117GO:0030552: cAMP binding1.60E-02
118GO:0030553: cGMP binding1.60E-02
119GO:0005525: GTP binding1.68E-02
120GO:0004601: peroxidase activity1.73E-02
121GO:0051536: iron-sulfur cluster binding1.86E-02
122GO:0004857: enzyme inhibitor activity1.86E-02
123GO:0043424: protein histidine kinase binding2.00E-02
124GO:0005216: ion channel activity2.00E-02
125GO:0005509: calcium ion binding2.09E-02
126GO:0033612: receptor serine/threonine kinase binding2.13E-02
127GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.23E-02
128GO:0016760: cellulose synthase (UDP-forming) activity2.42E-02
129GO:0022891: substrate-specific transmembrane transporter activity2.42E-02
130GO:0016874: ligase activity2.45E-02
131GO:0030599: pectinesterase activity2.45E-02
132GO:0003756: protein disulfide isomerase activity2.57E-02
133GO:0004812: aminoacyl-tRNA ligase activity2.72E-02
134GO:0005102: receptor binding2.72E-02
135GO:0030551: cyclic nucleotide binding2.88E-02
136GO:0004872: receptor activity3.36E-02
137GO:0019901: protein kinase binding3.36E-02
138GO:0000156: phosphorelay response regulator activity3.87E-02
139GO:0016791: phosphatase activity4.04E-02
140GO:0008483: transaminase activity4.22E-02
141GO:0016722: oxidoreductase activity, oxidizing metal ions4.22E-02
142GO:0015297: antiporter activity4.28E-02
143GO:0009931: calcium-dependent protein serine/threonine kinase activity4.95E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast1.60E-35
4GO:0009535: chloroplast thylakoid membrane1.84E-26
5GO:0009941: chloroplast envelope1.58E-15
6GO:0009534: chloroplast thylakoid3.82E-14
7GO:0009570: chloroplast stroma8.27E-14
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.48E-13
9GO:0048046: apoplast6.58E-08
10GO:0009654: photosystem II oxygen evolving complex1.99E-07
11GO:0009579: thylakoid9.59E-07
12GO:0030095: chloroplast photosystem II3.04E-06
13GO:0010287: plastoglobule2.33E-05
14GO:0009543: chloroplast thylakoid lumen2.70E-05
15GO:0019898: extrinsic component of membrane3.77E-05
16GO:0016021: integral component of membrane1.54E-04
17GO:0042651: thylakoid membrane1.75E-04
18GO:0031969: chloroplast membrane2.90E-04
19GO:0009533: chloroplast stromal thylakoid3.02E-04
20GO:0009782: photosystem I antenna complex3.50E-04
21GO:0009523: photosystem II4.76E-04
22GO:0045298: tubulin complex5.58E-04
23GO:0046658: anchored component of plasma membrane6.82E-04
24GO:0010319: stromule7.18E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex7.62E-04
26GO:0016020: membrane8.99E-04
27GO:0030076: light-harvesting complex1.44E-03
28GO:0005794: Golgi apparatus1.68E-03
29GO:0005960: glycine cleavage complex1.78E-03
30GO:0015630: microtubule cytoskeleton1.78E-03
31GO:0009512: cytochrome b6f complex3.05E-03
32GO:0005618: cell wall3.64E-03
33GO:0009505: plant-type cell wall4.33E-03
34GO:0000139: Golgi membrane5.11E-03
35GO:0005802: trans-Golgi network5.14E-03
36GO:0031359: integral component of chloroplast outer membrane5.36E-03
37GO:0005768: endosome6.61E-03
38GO:0009539: photosystem II reaction center7.14E-03
39GO:0000148: 1,3-beta-D-glucan synthase complex7.14E-03
40GO:0005763: mitochondrial small ribosomal subunit8.10E-03
41GO:0016324: apical plasma membrane1.01E-02
42GO:0009536: plastid1.21E-02
43GO:0031977: thylakoid lumen1.24E-02
44GO:0005886: plasma membrane1.32E-02
45GO:0009508: plastid chromosome1.35E-02
46GO:0009532: plastid stroma2.13E-02
47GO:0005874: microtubule2.17E-02
48GO:0009706: chloroplast inner membrane2.60E-02
49GO:0009522: photosystem I3.20E-02
50GO:0032580: Golgi cisterna membrane4.04E-02
51GO:0009506: plasmodesma4.19E-02
52GO:0009295: nucleoid4.22E-02
53GO:0031225: anchored component of membrane4.55E-02
54GO:0030529: intracellular ribonucleoprotein complex4.58E-02
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Gene type



Gene DE type