Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63420

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072660: maintenance of protein location in plasma membrane0.00E+00
2GO:0071327: cellular response to trehalose stimulus0.00E+00
3GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway0.00E+00
4GO:0051245: negative regulation of cellular defense response0.00E+00
5GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
6GO:0045792: negative regulation of cell size0.00E+00
7GO:1900367: positive regulation of defense response to insect0.00E+00
8GO:0045747: positive regulation of Notch signaling pathway0.00E+00
9GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)0.00E+00
10GO:0030149: sphingolipid catabolic process0.00E+00
11GO:0080142: regulation of salicylic acid biosynthetic process1.23E-07
12GO:0002221: pattern recognition receptor signaling pathway1.66E-06
13GO:2000072: regulation of defense response to fungus, incompatible interaction1.66E-06
14GO:0031349: positive regulation of defense response1.66E-06
15GO:0048281: inflorescence morphogenesis6.12E-06
16GO:0009617: response to bacterium8.64E-06
17GO:0042742: defense response to bacterium1.08E-05
18GO:0009626: plant-type hypersensitive response1.38E-05
19GO:0001676: long-chain fatty acid metabolic process1.41E-05
20GO:0006612: protein targeting to membrane1.41E-05
21GO:0006952: defense response1.42E-05
22GO:0060548: negative regulation of cell death2.61E-05
23GO:0010363: regulation of plant-type hypersensitive response2.61E-05
24GO:0015031: protein transport2.63E-05
25GO:0006886: intracellular protein transport5.53E-05
26GO:0031348: negative regulation of defense response6.13E-05
27GO:0010942: positive regulation of cell death6.24E-05
28GO:0006468: protein phosphorylation6.53E-05
29GO:0009625: response to insect7.01E-05
30GO:0009636: response to toxic substance8.36E-05
31GO:0007166: cell surface receptor signaling pathway8.78E-05
32GO:0061025: membrane fusion1.26E-04
33GO:2000031: regulation of salicylic acid mediated signaling pathway1.85E-04
34GO:0044376: RNA polymerase II complex import to nucleus1.86E-04
35GO:0060862: negative regulation of floral organ abscission1.86E-04
36GO:0009968: negative regulation of signal transduction1.86E-04
37GO:0006805: xenobiotic metabolic process1.86E-04
38GO:0043547: positive regulation of GTPase activity1.86E-04
39GO:0009609: response to symbiotic bacterium1.86E-04
40GO:1990022: RNA polymerase III complex localization to nucleus1.86E-04
41GO:0080136: priming of cellular response to stress1.86E-04
42GO:1901183: positive regulation of camalexin biosynthetic process1.86E-04
43GO:1900426: positive regulation of defense response to bacterium2.69E-04
44GO:0010200: response to chitin2.69E-04
45GO:0043069: negative regulation of programmed cell death3.16E-04
46GO:0006979: response to oxidative stress3.48E-04
47GO:0009407: toxin catabolic process4.18E-04
48GO:0019752: carboxylic acid metabolic process4.19E-04
49GO:0015914: phospholipid transport4.19E-04
50GO:0080151: positive regulation of salicylic acid mediated signaling pathway4.19E-04
51GO:0010618: aerenchyma formation4.19E-04
52GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.19E-04
53GO:0010105: negative regulation of ethylene-activated signaling pathway4.20E-04
54GO:0009867: jasmonic acid mediated signaling pathway5.00E-04
55GO:0009751: response to salicylic acid5.05E-04
56GO:0009737: response to abscisic acid5.53E-04
57GO:0070588: calcium ion transmembrane transport6.03E-04
58GO:0006887: exocytosis6.22E-04
59GO:0002230: positive regulation of defense response to virus by host6.84E-04
60GO:0055074: calcium ion homeostasis6.84E-04
61GO:1900140: regulation of seedling development6.84E-04
62GO:0072661: protein targeting to plasma membrane6.84E-04
63GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening6.84E-04
64GO:0051707: response to other organism6.89E-04
65GO:0009863: salicylic acid mediated signaling pathway7.41E-04
66GO:0048278: vesicle docking8.93E-04
67GO:0015696: ammonium transport9.77E-04
68GO:1902290: positive regulation of defense response to oomycetes9.77E-04
69GO:0043207: response to external biotic stimulus9.77E-04
70GO:0033014: tetrapyrrole biosynthetic process9.77E-04
71GO:0010148: transpiration9.77E-04
72GO:0009306: protein secretion1.15E-03
73GO:0009723: response to ethylene1.24E-03
74GO:0072488: ammonium transmembrane transport1.29E-03
75GO:0006221: pyrimidine nucleotide biosynthetic process1.29E-03
76GO:0000460: maturation of 5.8S rRNA1.29E-03
77GO:2000038: regulation of stomatal complex development1.29E-03
78GO:0016192: vesicle-mediated transport1.49E-03
79GO:0046283: anthocyanin-containing compound metabolic process1.65E-03
80GO:0031365: N-terminal protein amino acid modification1.65E-03
81GO:0010225: response to UV-C1.65E-03
82GO:0006623: protein targeting to vacuole1.65E-03
83GO:0010193: response to ozone1.77E-03
84GO:0009759: indole glucosinolate biosynthetic process2.03E-03
85GO:0006751: glutathione catabolic process2.03E-03
86GO:0000470: maturation of LSU-rRNA2.03E-03
87GO:0045040: protein import into mitochondrial outer membrane2.03E-03
88GO:0006904: vesicle docking involved in exocytosis2.27E-03
89GO:0006694: steroid biosynthetic process2.43E-03
90GO:2000037: regulation of stomatal complex patterning2.43E-03
91GO:0010310: regulation of hydrogen peroxide metabolic process2.43E-03
92GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.43E-03
93GO:0000911: cytokinesis by cell plate formation2.43E-03
94GO:0009612: response to mechanical stimulus2.43E-03
95GO:0009816: defense response to bacterium, incompatible interaction2.69E-03
96GO:0009627: systemic acquired resistance2.84E-03
97GO:0006906: vesicle fusion2.84E-03
98GO:1900057: positive regulation of leaf senescence2.87E-03
99GO:0010044: response to aluminum ion2.87E-03
100GO:0009610: response to symbiotic fungus2.87E-03
101GO:0043090: amino acid import2.87E-03
102GO:0071446: cellular response to salicylic acid stimulus2.87E-03
103GO:0070370: cellular heat acclimation2.87E-03
104GO:0010150: leaf senescence3.09E-03
105GO:0009787: regulation of abscisic acid-activated signaling pathway3.32E-03
106GO:0006470: protein dephosphorylation3.66E-03
107GO:0010204: defense response signaling pathway, resistance gene-independent3.80E-03
108GO:0043562: cellular response to nitrogen levels3.80E-03
109GO:0009699: phenylpropanoid biosynthetic process3.80E-03
110GO:0010120: camalexin biosynthetic process3.80E-03
111GO:0010119: regulation of stomatal movement3.82E-03
112GO:0045087: innate immune response4.19E-03
113GO:0006783: heme biosynthetic process4.30E-03
114GO:0009414: response to water deprivation4.67E-03
115GO:0048268: clathrin coat assembly4.82E-03
116GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.82E-03
117GO:0009651: response to salt stress4.91E-03
118GO:0006897: endocytosis4.97E-03
119GO:0006631: fatty acid metabolic process4.97E-03
120GO:0009682: induced systemic resistance5.92E-03
121GO:0052544: defense response by callose deposition in cell wall5.92E-03
122GO:0071365: cellular response to auxin stimulus6.51E-03
123GO:0008361: regulation of cell size6.51E-03
124GO:0012501: programmed cell death6.51E-03
125GO:0002213: defense response to insect6.51E-03
126GO:0006626: protein targeting to mitochondrion7.11E-03
127GO:0010229: inflorescence development7.11E-03
128GO:0007034: vacuolar transport7.73E-03
129GO:0034605: cellular response to heat7.73E-03
130GO:0009409: response to cold8.27E-03
131GO:0010053: root epidermal cell differentiation8.37E-03
132GO:0009969: xyloglucan biosynthetic process8.37E-03
133GO:0009620: response to fungus9.44E-03
134GO:0010187: negative regulation of seed germination9.71E-03
135GO:0000027: ribosomal large subunit assembly9.71E-03
136GO:0016575: histone deacetylation1.04E-02
137GO:0009269: response to desiccation1.11E-02
138GO:2000022: regulation of jasmonic acid mediated signaling pathway1.19E-02
139GO:0009814: defense response, incompatible interaction1.19E-02
140GO:0042127: regulation of cell proliferation1.34E-02
141GO:0006284: base-excision repair1.34E-02
142GO:0000413: protein peptidyl-prolyl isomerization1.50E-02
143GO:0042631: cellular response to water deprivation1.50E-02
144GO:0009790: embryo development1.52E-02
145GO:0010197: polar nucleus fusion1.58E-02
146GO:0010182: sugar mediated signaling pathway1.58E-02
147GO:0006520: cellular amino acid metabolic process1.58E-02
148GO:0009646: response to absence of light1.66E-02
149GO:0009749: response to glucose1.75E-02
150GO:0010183: pollen tube guidance1.75E-02
151GO:0000302: response to reactive oxygen species1.83E-02
152GO:0030163: protein catabolic process2.01E-02
153GO:0000910: cytokinesis2.29E-02
154GO:0001666: response to hypoxia2.38E-02
155GO:0015995: chlorophyll biosynthetic process2.67E-02
156GO:0008219: cell death2.88E-02
157GO:0048481: plant ovule development2.88E-02
158GO:0009832: plant-type cell wall biogenesis2.98E-02
159GO:0006970: response to osmotic stress2.99E-02
160GO:0007049: cell cycle3.10E-02
161GO:0050832: defense response to fungus3.16E-02
162GO:0007568: aging3.19E-02
163GO:0006865: amino acid transport3.30E-02
164GO:0006457: protein folding3.31E-02
165GO:0046686: response to cadmium ion3.33E-02
166GO:0080167: response to karrikin3.44E-02
167GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.56E-02
168GO:0046777: protein autophosphorylation3.68E-02
169GO:0009965: leaf morphogenesis4.43E-02
170GO:0031347: regulation of defense response4.67E-02
171GO:0016042: lipid catabolic process4.91E-02
RankGO TermAdjusted P value
1GO:0052822: DNA-3-methylguanine glycosylase activity0.00E+00
2GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
3GO:0052821: DNA-7-methyladenine glycosylase activity0.00E+00
4GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
5GO:0003905: alkylbase DNA N-glycosylase activity0.00E+00
6GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
7GO:0043916: DNA-7-methylguanine glycosylase activity0.00E+00
8GO:0005524: ATP binding4.59E-06
9GO:0016301: kinase activity5.44E-05
10GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.62E-05
11GO:0102391: decanoate--CoA ligase activity8.69E-05
12GO:0008320: protein transmembrane transporter activity1.15E-04
13GO:0043295: glutathione binding1.15E-04
14GO:0004467: long-chain fatty acid-CoA ligase activity1.15E-04
15GO:0004714: transmembrane receptor protein tyrosine kinase activity1.48E-04
16GO:0004325: ferrochelatase activity1.86E-04
17GO:2001147: camalexin binding1.86E-04
18GO:0031127: alpha-(1,2)-fucosyltransferase activity1.86E-04
19GO:2001227: quercitrin binding1.86E-04
20GO:0015085: calcium ion transmembrane transporter activity1.86E-04
21GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity1.86E-04
22GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity1.86E-04
23GO:0004338: glucan exo-1,3-beta-glucosidase activity4.19E-04
24GO:0043021: ribonucleoprotein complex binding4.19E-04
25GO:0038199: ethylene receptor activity4.19E-04
26GO:0050897: cobalt ion binding4.45E-04
27GO:0005388: calcium-transporting ATPase activity4.78E-04
28GO:0004364: glutathione transferase activity6.55E-04
29GO:0003840: gamma-glutamyltransferase activity6.84E-04
30GO:0036374: glutathione hydrolase activity6.84E-04
31GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity6.84E-04
32GO:0004148: dihydrolipoyl dehydrogenase activity6.84E-04
33GO:0005484: SNAP receptor activity6.89E-04
34GO:0004672: protein kinase activity8.12E-04
35GO:0033612: receptor serine/threonine kinase binding8.93E-04
36GO:0051740: ethylene binding9.77E-04
37GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity9.77E-04
38GO:0005515: protein binding1.05E-03
39GO:0043495: protein anchor1.29E-03
40GO:0004930: G-protein coupled receptor activity1.29E-03
41GO:0004040: amidase activity1.65E-03
42GO:0008725: DNA-3-methyladenine glycosylase activity1.65E-03
43GO:0008519: ammonium transmembrane transporter activity2.03E-03
44GO:0030976: thiamine pyrophosphate binding2.03E-03
45GO:0004029: aldehyde dehydrogenase (NAD) activity2.03E-03
46GO:0004602: glutathione peroxidase activity2.43E-03
47GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity2.87E-03
48GO:0016831: carboxy-lyase activity2.87E-03
49GO:0008235: metalloexopeptidase activity2.87E-03
50GO:0005516: calmodulin binding2.90E-03
51GO:0004806: triglyceride lipase activity2.99E-03
52GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.31E-03
53GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)3.80E-03
54GO:0008417: fucosyltransferase activity4.30E-03
55GO:0000149: SNARE binding4.57E-03
56GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity4.82E-03
57GO:0004673: protein histidine kinase activity5.36E-03
58GO:0005545: 1-phosphatidylinositol binding5.36E-03
59GO:0004713: protein tyrosine kinase activity5.36E-03
60GO:0004177: aminopeptidase activity5.92E-03
61GO:0008559: xenobiotic-transporting ATPase activity5.92E-03
62GO:0043531: ADP binding6.05E-03
63GO:0031072: heat shock protein binding7.11E-03
64GO:0000155: phosphorelay sensor kinase activity7.11E-03
65GO:0000175: 3'-5'-exoribonuclease activity7.11E-03
66GO:0004535: poly(A)-specific ribonuclease activity7.73E-03
67GO:0042973: glucan endo-1,3-beta-D-glucosidase activity7.73E-03
68GO:0003712: transcription cofactor activity8.37E-03
69GO:0004407: histone deacetylase activity9.71E-03
70GO:0004722: protein serine/threonine phosphatase activity1.00E-02
71GO:0051082: unfolded protein binding1.03E-02
72GO:0043424: protein histidine kinase binding1.04E-02
73GO:0016746: transferase activity, transferring acyl groups1.07E-02
74GO:0008408: 3'-5' exonuclease activity1.11E-02
75GO:0004540: ribonuclease activity1.11E-02
76GO:0004707: MAP kinase activity1.11E-02
77GO:0004674: protein serine/threonine kinase activity1.12E-02
78GO:0008810: cellulase activity1.26E-02
79GO:0046872: metal ion binding1.35E-02
80GO:0005509: calcium ion binding1.53E-02
81GO:0008565: protein transporter activity1.55E-02
82GO:0004527: exonuclease activity1.58E-02
83GO:0030276: clathrin binding1.58E-02
84GO:0001085: RNA polymerase II transcription factor binding1.58E-02
85GO:0004872: receptor activity1.75E-02
86GO:0000166: nucleotide binding2.40E-02
87GO:0009931: calcium-dependent protein serine/threonine kinase activity2.58E-02
88GO:0030247: polysaccharide binding2.67E-02
89GO:0004683: calmodulin-dependent protein kinase activity2.67E-02
90GO:0005096: GTPase activator activity2.98E-02
91GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.19E-02
92GO:0004712: protein serine/threonine/tyrosine kinase activity3.63E-02
93GO:0005507: copper ion binding3.72E-02
94GO:0042393: histone binding3.74E-02
95GO:0015293: symporter activity4.43E-02
96GO:0005198: structural molecule activity4.43E-02
97GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.55E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane3.43E-08
2GO:0005789: endoplasmic reticulum membrane4.99E-05
3GO:0030014: CCR4-NOT complex1.86E-04
4GO:0017119: Golgi transport complex3.16E-04
5GO:0030134: ER to Golgi transport vesicle4.19E-04
6GO:0070545: PeBoW complex4.19E-04
7GO:0005901: caveola4.19E-04
8GO:0016021: integral component of membrane4.71E-04
9GO:0031902: late endosome membrane6.22E-04
10GO:0030139: endocytic vesicle6.84E-04
11GO:0046861: glyoxysomal membrane6.84E-04
12GO:0005905: clathrin-coated pit8.93E-04
13GO:0070062: extracellular exosome9.77E-04
14GO:0030658: transport vesicle membrane9.77E-04
15GO:0000164: protein phosphatase type 1 complex1.65E-03
16GO:0009504: cell plate1.65E-03
17GO:0032580: Golgi cisterna membrane2.14E-03
18GO:0005801: cis-Golgi network2.43E-03
19GO:0030687: preribosome, large subunit precursor2.87E-03
20GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane2.87E-03
21GO:0019005: SCF ubiquitin ligase complex3.31E-03
22GO:0030131: clathrin adaptor complex3.32E-03
23GO:0005783: endoplasmic reticulum3.55E-03
24GO:0009514: glyoxysome3.80E-03
25GO:0005742: mitochondrial outer membrane translocase complex3.80E-03
26GO:0005887: integral component of plasma membrane3.97E-03
27GO:0030665: clathrin-coated vesicle membrane4.82E-03
28GO:0031201: SNARE complex4.97E-03
29GO:0080008: Cul4-RING E3 ubiquitin ligase complex6.05E-03
30GO:0005578: proteinaceous extracellular matrix7.11E-03
31GO:0005834: heterotrimeric G-protein complex9.15E-03
32GO:0005741: mitochondrial outer membrane1.11E-02
33GO:0016020: membrane1.14E-02
34GO:0005744: mitochondrial inner membrane presequence translocase complex1.34E-02
35GO:0030136: clathrin-coated vesicle1.42E-02
36GO:0009506: plasmodesma1.75E-02
37GO:0019898: extrinsic component of membrane1.75E-02
38GO:0000145: exocyst1.92E-02
39GO:0030529: intracellular ribonucleoprotein complex2.38E-02
40GO:0005788: endoplasmic reticulum lumen2.48E-02
41GO:0005667: transcription factor complex2.58E-02
42GO:0000151: ubiquitin ligase complex2.88E-02
43GO:0000325: plant-type vacuole3.19E-02
44GO:0005773: vacuole3.35E-02
45GO:0005774: vacuolar membrane4.06E-02
46GO:0005802: trans-Golgi network4.30E-02
47GO:0005856: cytoskeleton4.43E-02
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Gene type



Gene DE type