co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:0010206: photosystem II repair	2.21E-05
3	GO:0065002: intracellular protein transmembrane transport	4.04E-05
4	GO:0006106: fumarate metabolic process	4.04E-05
5	GO:0010028: xanthophyll cycle	4.04E-05
6	GO:0034337: RNA folding	4.04E-05
7	GO:0043953: protein transport by the Tat complex	4.04E-05
8	GO:0010207: photosystem II assembly	6.26E-05
9	GO:0018026: peptidyl-lysine monomethylation	1.00E-04
10	GO:0080009: mRNA methylation	1.00E-04
11	GO:0016122: xanthophyll metabolic process	1.00E-04
12	GO:0006518: peptide metabolic process	1.73E-04
13	GO:0019252: starch biosynthetic process	2.26E-04
14	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.55E-04
15	GO:0010109: regulation of photosynthesis	3.43E-04
16	GO:0015994: chlorophyll metabolic process	3.43E-04
17	GO:0009942: longitudinal axis specification	6.40E-04
18	GO:1901259: chloroplast rRNA processing	6.40E-04
19	GO:0005978: glycogen biosynthetic process	8.61E-04
20	GO:0007389: pattern specification process	9.77E-04
21	GO:0009638: phototropism	1.22E-03
22	GO:1903507: negative regulation of nucleic acid-templated transcription	1.49E-03
23	GO:0046856: phosphatidylinositol dephosphorylation	1.49E-03
24	GO:0005983: starch catabolic process	1.63E-03
25	GO:0006108: malate metabolic process	1.77E-03
26	GO:0009785: blue light signaling pathway	1.77E-03
27	GO:2000377: regulation of reactive oxygen species metabolic process	2.39E-03
28	GO:0007017: microtubule-based process	2.55E-03
29	GO:0035428: hexose transmembrane transport	2.89E-03
30	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.89E-03
31	GO:0009686: gibberellin biosynthetic process	3.06E-03
32	GO:0042335: cuticle development	3.61E-03
33	GO:0046323: glucose import	3.80E-03
34	GO:0010268: brassinosteroid homeostasis	3.80E-03
35	GO:0071472: cellular response to salt stress	3.80E-03
36	GO:0010305: leaf vascular tissue pattern formation	3.80E-03
37	GO:0016132: brassinosteroid biosynthetic process	4.38E-03
38	GO:0010583: response to cyclopentenone	4.58E-03
39	GO:0030163: protein catabolic process	4.79E-03
40	GO:0009567: double fertilization forming a zygote and endosperm	5.00E-03
41	GO:0016125: sterol metabolic process	5.00E-03
42	GO:0010252: auxin homeostasis	5.00E-03
43	GO:0015979: photosynthesis	5.04E-03
44	GO:0010027: thylakoid membrane organization	5.64E-03
45	GO:0042128: nitrate assimilation	6.09E-03
46	GO:0015995: chlorophyll biosynthetic process	6.31E-03
47	GO:0005975: carbohydrate metabolic process	7.30E-03
48	GO:0009631: cold acclimation	7.49E-03
49	GO:0006099: tricarboxylic acid cycle	8.24E-03
50	GO:0006631: fatty acid metabolic process	9.01E-03
51	GO:0009926: auxin polar transport	9.53E-03
52	GO:0006855: drug transmembrane transport	1.06E-02
53	GO:0031347: regulation of defense response	1.09E-02
54	GO:0009664: plant-type cell wall organization	1.12E-02
55	GO:0009611: response to wounding	1.18E-02
56	GO:0010150: leaf senescence	2.22E-02
57	GO:0007623: circadian rhythm	2.22E-02
58	GO:0007166: cell surface receptor signaling pathway	2.45E-02
59	GO:0009658: chloroplast organization	3.04E-02
60	GO:0046777: protein autophosphorylation	3.71E-02
61	GO:0007275: multicellular organism development	4.60E-02
62	GO:0009408: response to heat	4.67E-02
63	GO:0048364: root development	4.81E-02
64	GO:0007165: signal transduction	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0010303: limit dextrinase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0051060: pullulanase activity	0.00E+00
4	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.04E-05
5	GO:0004333: fumarate hydratase activity	4.04E-05
6	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.04E-05
7	GO:0051777: ent-kaurenoate oxidase activity	4.04E-05
8	GO:0004856: xylulokinase activity	4.04E-05
9	GO:0016868: intramolecular transferase activity, phosphotransferases	1.00E-04
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.00E-04
11	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.00E-04
12	GO:0004751: ribose-5-phosphate isomerase activity	1.73E-04
13	GO:0019201: nucleotide kinase activity	2.55E-04
14	GO:0016851: magnesium chelatase activity	2.55E-04
15	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	2.55E-04
16	GO:0008878: glucose-1-phosphate adenylyltransferase activity	3.43E-04
17	GO:0016279: protein-lysine N-methyltransferase activity	3.43E-04
18	GO:0009011: starch synthase activity	3.43E-04
19	GO:0016773: phosphotransferase activity, alcohol group as acceptor	4.37E-04
20	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	5.37E-04
21	GO:0004556: alpha-amylase activity	5.37E-04
22	GO:0004017: adenylate kinase activity	6.40E-04
23	GO:0009672: auxin:proton symporter activity	1.22E-03
24	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.63E-03
25	GO:0019843: rRNA binding	1.70E-03
26	GO:0031072: heat shock protein binding	1.77E-03
27	GO:0010329: auxin efflux transmembrane transporter activity	1.77E-03
28	GO:0016787: hydrolase activity	2.38E-03
29	GO:0003714: transcription corepressor activity	2.39E-03
30	GO:0003756: protein disulfide isomerase activity	3.24E-03
31	GO:0005525: GTP binding	3.31E-03
32	GO:0010181: FMN binding	3.99E-03
33	GO:0005355: glucose transmembrane transporter activity	3.99E-03
34	GO:0019901: protein kinase binding	4.19E-03
35	GO:0005200: structural constituent of cytoskeleton	5.21E-03
36	GO:0008236: serine-type peptidase activity	6.54E-03
37	GO:0004672: protein kinase activity	7.00E-03
38	GO:0005096: GTPase activator activity	7.01E-03
39	GO:0004222: metalloendopeptidase activity	7.25E-03
40	GO:0003746: translation elongation factor activity	7.99E-03
41	GO:0004712: protein serine/threonine/tyrosine kinase activity	8.49E-03
42	GO:0005198: structural molecule activity	1.03E-02
43	GO:0051082: unfolded protein binding	1.51E-02
44	GO:0004252: serine-type endopeptidase activity	1.91E-02
45	GO:0015144: carbohydrate transmembrane transporter activity	2.01E-02
46	GO:0005524: ATP binding	2.11E-02
47	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.12E-02
48	GO:0005351: sugar:proton symporter activity	2.19E-02
49	GO:0003743: translation initiation factor activity	2.48E-02
50	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.64E-02
51	GO:0046982: protein heterodimerization activity	2.99E-02
52	GO:0016491: oxidoreductase activity	3.09E-02
53	GO:0004871: signal transducer activity	4.16E-02
54	GO:0003924: GTPase activity	4.67E-02
55	GO:0009055: electron carrier activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	2.73E-13
3	GO:0009534: chloroplast thylakoid	4.05E-09
4	GO:0009570: chloroplast stroma	3.25E-08
5	GO:0009535: chloroplast thylakoid membrane	7.29E-07
6	GO:0009941: chloroplast envelope	1.06E-06
7	GO:0045239: tricarboxylic acid cycle enzyme complex	4.04E-05
8	GO:0031361: integral component of thylakoid membrane	4.04E-05
9	GO:0009543: chloroplast thylakoid lumen	1.47E-04
10	GO:0010007: magnesium chelatase complex	1.73E-04
11	GO:0033281: TAT protein transport complex	1.73E-04
12	GO:0009531: secondary cell wall	2.55E-04
13	GO:0031977: thylakoid lumen	6.80E-04
14	GO:0009533: chloroplast stromal thylakoid	7.49E-04
15	GO:0045298: tubulin complex	1.10E-03
16	GO:0032040: small-subunit processome	1.63E-03
17	GO:0016602: CCAAT-binding factor complex	1.77E-03
18	GO:0030095: chloroplast photosystem II	1.92E-03
19	GO:0010287: plastoglobule	1.70E-02
20	GO:0005886: plasma membrane	1.84E-02
21	GO:0005840: ribosome	2.46E-02
22	GO:0005874: microtubule	3.45E-02
23	GO:0031969: chloroplast membrane	3.54E-02
24	GO:0016020: membrane	4.91E-02