GO Enrichment Analysis of Co-expressed Genes with
AT3G62240
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043633: polyadenylation-dependent RNA catabolic process | 0.00E+00 |
| 2 | GO:0006987: activation of signaling protein activity involved in unfolded protein response | 0.00E+00 |
| 3 | GO:1902065: response to L-glutamate | 1.87E-05 |
| 4 | GO:0010265: SCF complex assembly | 1.87E-05 |
| 5 | GO:0042759: long-chain fatty acid biosynthetic process | 1.87E-05 |
| 6 | GO:1902466: positive regulation of histone H3-K27 trimethylation | 1.87E-05 |
| 7 | GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway | 1.87E-05 |
| 8 | GO:0050994: regulation of lipid catabolic process | 4.85E-05 |
| 9 | GO:0046513: ceramide biosynthetic process | 1.30E-04 |
| 10 | GO:1901000: regulation of response to salt stress | 1.30E-04 |
| 11 | GO:0070301: cellular response to hydrogen peroxide | 1.30E-04 |
| 12 | GO:0072334: UDP-galactose transmembrane transport | 1.30E-04 |
| 13 | GO:0009399: nitrogen fixation | 1.30E-04 |
| 14 | GO:0006542: glutamine biosynthetic process | 1.78E-04 |
| 15 | GO:0033320: UDP-D-xylose biosynthetic process | 1.78E-04 |
| 16 | GO:0022622: root system development | 1.78E-04 |
| 17 | GO:0006090: pyruvate metabolic process | 2.30E-04 |
| 18 | GO:0002238: response to molecule of fungal origin | 2.85E-04 |
| 19 | GO:0042732: D-xylose metabolic process | 2.85E-04 |
| 20 | GO:0030968: endoplasmic reticulum unfolded protein response | 5.27E-04 |
| 21 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.93E-04 |
| 22 | GO:0010449: root meristem growth | 6.61E-04 |
| 23 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 6.61E-04 |
| 24 | GO:0010629: negative regulation of gene expression | 7.30E-04 |
| 25 | GO:0071365: cellular response to auxin stimulus | 8.75E-04 |
| 26 | GO:0006108: malate metabolic process | 9.49E-04 |
| 27 | GO:0009225: nucleotide-sugar metabolic process | 1.10E-03 |
| 28 | GO:0080188: RNA-directed DNA methylation | 1.10E-03 |
| 29 | GO:0051260: protein homooligomerization | 1.44E-03 |
| 30 | GO:0071215: cellular response to abscisic acid stimulus | 1.61E-03 |
| 31 | GO:0048366: leaf development | 1.63E-03 |
| 32 | GO:0046777: protein autophosphorylation | 1.83E-03 |
| 33 | GO:0010087: phloem or xylem histogenesis | 1.89E-03 |
| 34 | GO:0042631: cellular response to water deprivation | 1.89E-03 |
| 35 | GO:0042752: regulation of circadian rhythm | 2.09E-03 |
| 36 | GO:0000302: response to reactive oxygen species | 2.29E-03 |
| 37 | GO:0016579: protein deubiquitination | 2.82E-03 |
| 38 | GO:0010029: regulation of seed germination | 3.05E-03 |
| 39 | GO:0009816: defense response to bacterium, incompatible interaction | 3.05E-03 |
| 40 | GO:0042128: nitrate assimilation | 3.16E-03 |
| 41 | GO:0048573: photoperiodism, flowering | 3.28E-03 |
| 42 | GO:0009631: cold acclimation | 3.88E-03 |
| 43 | GO:0009867: jasmonic acid mediated signaling pathway | 4.13E-03 |
| 44 | GO:0045087: innate immune response | 4.13E-03 |
| 45 | GO:0008283: cell proliferation | 4.91E-03 |
| 46 | GO:0000165: MAPK cascade | 5.60E-03 |
| 47 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 5.60E-03 |
| 48 | GO:0006511: ubiquitin-dependent protein catabolic process | 5.97E-03 |
| 49 | GO:0006364: rRNA processing | 6.02E-03 |
| 50 | GO:0048367: shoot system development | 6.91E-03 |
| 51 | GO:0009626: plant-type hypersensitive response | 7.07E-03 |
| 52 | GO:0006351: transcription, DNA-templated | 8.00E-03 |
| 53 | GO:0009733: response to auxin | 9.99E-03 |
| 54 | GO:0010150: leaf senescence | 1.13E-02 |
| 55 | GO:0007166: cell surface receptor signaling pathway | 1.24E-02 |
| 56 | GO:0008380: RNA splicing | 1.28E-02 |
| 57 | GO:0010468: regulation of gene expression | 1.28E-02 |
| 58 | GO:0046686: response to cadmium ion | 1.39E-02 |
| 59 | GO:0006970: response to osmotic stress | 1.62E-02 |
| 60 | GO:0007049: cell cycle | 1.66E-02 |
| 61 | GO:0006355: regulation of transcription, DNA-templated | 1.77E-02 |
| 62 | GO:0010200: response to chitin | 1.83E-02 |
| 63 | GO:0009793: embryo development ending in seed dormancy | 2.07E-02 |
| 64 | GO:0009751: response to salicylic acid | 2.34E-02 |
| 65 | GO:0006397: mRNA processing | 2.43E-02 |
| 66 | GO:0048364: root development | 2.43E-02 |
| 67 | GO:0009753: response to jasmonic acid | 2.48E-02 |
| 68 | GO:0009873: ethylene-activated signaling pathway | 2.83E-02 |
| 69 | GO:0009651: response to salt stress | 3.00E-02 |
| 70 | GO:0009734: auxin-activated signaling pathway | 3.01E-02 |
| 71 | GO:0009908: flower development | 3.31E-02 |
| 72 | GO:0009611: response to wounding | 3.61E-02 |
| 73 | GO:0045893: positive regulation of transcription, DNA-templated | 3.92E-02 |
| 74 | GO:0006457: protein folding | 4.27E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity | 1.87E-05 |
| 2 | GO:0050291: sphingosine N-acyltransferase activity | 4.85E-05 |
| 3 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 8.61E-05 |
| 4 | GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity | 8.61E-05 |
| 5 | GO:0004470: malic enzyme activity | 1.78E-04 |
| 6 | GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor | 1.78E-04 |
| 7 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.78E-04 |
| 8 | GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity | 1.78E-04 |
| 9 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 2.30E-04 |
| 10 | GO:0004356: glutamate-ammonia ligase activity | 2.30E-04 |
| 11 | GO:0005459: UDP-galactose transmembrane transporter activity | 2.30E-04 |
| 12 | GO:0008948: oxaloacetate decarboxylase activity | 2.30E-04 |
| 13 | GO:0048040: UDP-glucuronate decarboxylase activity | 2.85E-04 |
| 14 | GO:0004709: MAP kinase kinase kinase activity | 2.85E-04 |
| 15 | GO:0019900: kinase binding | 3.42E-04 |
| 16 | GO:0070403: NAD+ binding | 3.42E-04 |
| 17 | GO:0005515: protein binding | 3.70E-04 |
| 18 | GO:0071949: FAD binding | 5.93E-04 |
| 19 | GO:0004521: endoribonuclease activity | 8.75E-04 |
| 20 | GO:0043424: protein histidine kinase binding | 1.35E-03 |
| 21 | GO:0008408: 3'-5' exonuclease activity | 1.44E-03 |
| 22 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 1.44E-03 |
| 23 | GO:0061630: ubiquitin protein ligase activity | 1.80E-03 |
| 24 | GO:0010181: FMN binding | 2.09E-03 |
| 25 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 2.29E-03 |
| 26 | GO:0016791: phosphatase activity | 2.61E-03 |
| 27 | GO:0004721: phosphoprotein phosphatase activity | 3.28E-03 |
| 28 | GO:0030247: polysaccharide binding | 3.28E-03 |
| 29 | GO:0005096: GTPase activator activity | 3.63E-03 |
| 30 | GO:0030145: manganese ion binding | 3.88E-03 |
| 31 | GO:0051287: NAD binding | 5.60E-03 |
| 32 | GO:0031625: ubiquitin protein ligase binding | 6.46E-03 |
| 33 | GO:0004674: protein serine/threonine kinase activity | 9.41E-03 |
| 34 | GO:0043565: sequence-specific DNA binding | 9.88E-03 |
| 35 | GO:0015144: carbohydrate transmembrane transporter activity | 1.02E-02 |
| 36 | GO:0003677: DNA binding | 1.03E-02 |
| 37 | GO:0005351: sugar:proton symporter activity | 1.11E-02 |
| 38 | GO:0004842: ubiquitin-protein transferase activity | 1.23E-02 |
| 39 | GO:0043531: ADP binding | 1.64E-02 |
| 40 | GO:0005524: ATP binding | 1.74E-02 |
| 41 | GO:0004497: monooxygenase activity | 1.79E-02 |
| 42 | GO:0042803: protein homodimerization activity | 2.10E-02 |
| 43 | GO:0004722: protein serine/threonine phosphatase activity | 2.17E-02 |
| 44 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 2.37E-02 |
| 45 | GO:0004519: endonuclease activity | 2.51E-02 |
| 46 | GO:0016887: ATPase activity | 3.23E-02 |
| 47 | GO:0000166: nucleotide binding | 3.55E-02 |
| 48 | GO:0016301: kinase activity | 4.39E-02 |
| 49 | GO:0005507: copper ion binding | 4.57E-02 |
| 50 | GO:0005516: calmodulin binding | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000176: nuclear exosome (RNase complex) | 8.61E-05 |
| 2 | GO:0042406: extrinsic component of endoplasmic reticulum membrane | 8.61E-05 |
| 3 | GO:0031461: cullin-RING ubiquitin ligase complex | 1.30E-04 |
| 4 | GO:0000151: ubiquitin ligase complex | 1.72E-04 |
| 5 | GO:0030173: integral component of Golgi membrane | 3.42E-04 |
| 6 | GO:0000794: condensed nuclear chromosome | 4.02E-04 |
| 7 | GO:0030176: integral component of endoplasmic reticulum membrane | 1.10E-03 |
| 8 | GO:0005886: plasma membrane | 1.80E-03 |
| 9 | GO:0005819: spindle | 4.38E-03 |
| 10 | GO:0005774: vacuolar membrane | 6.02E-03 |
| 11 | GO:0005829: cytosol | 8.81E-03 |
| 12 | GO:0009524: phragmoplast | 9.33E-03 |
| 13 | GO:0005737: cytoplasm | 9.93E-03 |
| 14 | GO:0005789: endoplasmic reticulum membrane | 1.36E-02 |
| 15 | GO:0009506: plasmodesma | 3.28E-02 |
| 16 | GO:0022626: cytosolic ribosome | 3.44E-02 |
| 17 | GO:0005618: cell wall | 3.54E-02 |
| 18 | GO:0005777: peroxisome | 3.92E-02 |
| 19 | GO:0005773: vacuole | 4.73E-02 |
| 20 | GO:0005794: Golgi apparatus | 4.76E-02 |