Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G61960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010184: cytokinin transport1.57E-05
2GO:0046520: sphingoid biosynthetic process1.57E-05
3GO:0032509: endosome transport via multivesicular body sorting pathway4.12E-05
4GO:0001736: establishment of planar polarity4.12E-05
5GO:0042256: mature ribosome assembly7.34E-05
6GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway7.34E-05
7GO:0030029: actin filament-based process7.34E-05
8GO:0070301: cellular response to hydrogen peroxide1.11E-04
9GO:0000578: embryonic axis specification1.11E-04
10GO:0015743: malate transport1.53E-04
11GO:0043097: pyrimidine nucleoside salvage1.98E-04
12GO:0042542: response to hydrogen peroxide2.22E-04
13GO:0006206: pyrimidine nucleobase metabolic process2.47E-04
14GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation2.47E-04
15GO:0009395: phospholipid catabolic process3.49E-04
16GO:0009970: cellular response to sulfate starvation6.38E-04
17GO:0006995: cellular response to nitrogen starvation6.38E-04
18GO:0009688: abscisic acid biosynthetic process6.38E-04
19GO:0052544: defense response by callose deposition in cell wall7.00E-04
20GO:0048765: root hair cell differentiation7.00E-04
21GO:0009725: response to hormone8.30E-04
22GO:0002237: response to molecule of bacterial origin8.97E-04
23GO:0007034: vacuolar transport8.97E-04
24GO:0006863: purine nucleobase transport1.03E-03
25GO:0031348: negative regulation of defense response1.33E-03
26GO:0040007: growth1.40E-03
27GO:0001944: vasculature development1.40E-03
28GO:0045492: xylan biosynthetic process1.48E-03
29GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.56E-03
30GO:0010182: sugar mediated signaling pathway1.73E-03
31GO:0009851: auxin biosynthetic process1.90E-03
32GO:0071281: cellular response to iron ion2.17E-03
33GO:0008219: cell death3.05E-03
34GO:0010119: regulation of stomatal movement3.36E-03
35GO:0009640: photomorphogenesis4.25E-03
36GO:0009926: auxin polar transport4.25E-03
37GO:0000165: MAPK cascade4.84E-03
38GO:0009736: cytokinin-activated signaling pathway5.21E-03
39GO:0048367: shoot system development5.98E-03
40GO:0009620: response to fungus6.24E-03
41GO:0009058: biosynthetic process8.06E-03
42GO:0042744: hydrogen peroxide catabolic process8.50E-03
43GO:0009790: embryo development8.65E-03
44GO:0016036: cellular response to phosphate starvation9.26E-03
45GO:0007623: circadian rhythm9.73E-03
46GO:0010150: leaf senescence9.73E-03
47GO:0010468: regulation of gene expression1.10E-02
48GO:0006970: response to osmotic stress1.39E-02
49GO:0009723: response to ethylene1.47E-02
50GO:0007165: signal transduction1.50E-02
51GO:0016192: vesicle-mediated transport1.60E-02
52GO:0044550: secondary metabolite biosynthetic process1.63E-02
53GO:0045454: cell redox homeostasis1.75E-02
54GO:0032259: methylation1.97E-02
55GO:0009408: response to heat2.03E-02
56GO:0048364: root development2.09E-02
57GO:0055114: oxidation-reduction process2.14E-02
58GO:0009753: response to jasmonic acid2.14E-02
59GO:0009873: ethylene-activated signaling pathway2.44E-02
60GO:0009734: auxin-activated signaling pathway2.59E-02
61GO:0009416: response to light stimulus3.06E-02
62GO:0009555: pollen development3.06E-02
63GO:0035556: intracellular signal transduction3.18E-02
64GO:0051301: cell division3.25E-02
65GO:0006952: defense response4.00E-02
RankGO TermAdjusted P value
1GO:0010293: abscisic aldehyde oxidase activity0.00E+00
2GO:0015211: purine nucleoside transmembrane transporter activity0.00E+00
3GO:0000170: sphingosine hydroxylase activity1.57E-05
4GO:0004112: cyclic-nucleotide phosphodiesterase activity1.57E-05
5GO:0042284: sphingolipid delta-4 desaturase activity4.12E-05
6GO:0004096: catalase activity7.34E-05
7GO:0004031: aldehyde oxidase activity1.53E-04
8GO:0050302: indole-3-acetaldehyde oxidase activity1.53E-04
9GO:0005253: anion channel activity1.53E-04
10GO:0004849: uridine kinase activity2.97E-04
11GO:0015140: malate transmembrane transporter activity3.49E-04
12GO:0008081: phosphoric diester hydrolase activity8.30E-04
13GO:0005506: iron ion binding9.47E-04
14GO:0043424: protein histidine kinase binding1.18E-03
15GO:0005345: purine nucleobase transmembrane transporter activity1.18E-03
16GO:0004707: MAP kinase activity1.25E-03
17GO:0005200: structural constituent of cytoskeleton2.36E-03
18GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.36E-03
19GO:0050897: cobalt ion binding3.36E-03
20GO:0003993: acid phosphatase activity3.69E-03
21GO:0035091: phosphatidylinositol binding4.48E-03
22GO:0051537: 2 iron, 2 sulfur cluster binding4.48E-03
23GO:0031625: ubiquitin protein ligase binding5.59E-03
24GO:0003729: mRNA binding1.07E-02
25GO:0020037: heme binding1.14E-02
26GO:0008168: methyltransferase activity1.29E-02
27GO:0016788: hydrolase activity, acting on ester bonds1.34E-02
28GO:0050660: flavin adenine dinucleotide binding1.47E-02
29GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.85E-02
30GO:0005515: protein binding1.96E-02
31GO:0009055: electron carrier activity2.14E-02
32GO:0016301: kinase activity3.37E-02
33GO:0019825: oxygen binding3.94E-02
RankGO TermAdjusted P value
1GO:0005789: endoplasmic reticulum membrane1.63E-03
2GO:0010008: endosome membrane5.98E-03
3GO:0005886: plasma membrane7.00E-03
4GO:0005623: cell7.91E-03
5GO:0009705: plant-type vacuole membrane9.73E-03
6GO:0005783: endoplasmic reticulum1.12E-02
7GO:0005887: integral component of plasma membrane2.53E-02
8GO:0005618: cell wall2.86E-02
9GO:0022626: cytosolic ribosome2.96E-02
10GO:0005777: peroxisome3.38E-02
11GO:0005794: Golgi apparatus3.65E-02
12GO:0005773: vacuole3.83E-02
13GO:0005802: trans-Golgi network4.28E-02
14GO:0005768: endosome4.69E-02
15GO:0009570: chloroplast stroma4.72E-02
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Gene type



Gene DE type