Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G61640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901485: positive regulation of transcription factor catabolic process0.00E+00
2GO:0000271: polysaccharide biosynthetic process5.64E-06
3GO:0080164: regulation of nitric oxide metabolic process4.88E-05
4GO:0019354: siroheme biosynthetic process4.88E-05
5GO:0071497: cellular response to freezing1.20E-04
6GO:0051592: response to calcium ion1.20E-04
7GO:0019722: calcium-mediated signaling1.96E-04
8GO:0006556: S-adenosylmethionine biosynthetic process2.06E-04
9GO:0009741: response to brassinosteroid2.50E-04
10GO:0045489: pectin biosynthetic process2.50E-04
11GO:0007267: cell-cell signaling4.00E-04
12GO:0046345: abscisic acid catabolic process4.04E-04
13GO:2000762: regulation of phenylpropanoid metabolic process5.13E-04
14GO:0010411: xyloglucan metabolic process5.26E-04
15GO:0060918: auxin transport6.29E-04
16GO:1900425: negative regulation of defense response to bacterium6.29E-04
17GO:0006555: methionine metabolic process6.29E-04
18GO:0016051: carbohydrate biosynthetic process7.29E-04
19GO:0009612: response to mechanical stimulus7.50E-04
20GO:0010200: response to chitin7.60E-04
21GO:0051510: regulation of unidimensional cell growth8.75E-04
22GO:0010038: response to metal ion8.75E-04
23GO:0042542: response to hydrogen peroxide8.93E-04
24GO:0030162: regulation of proteolysis1.01E-03
25GO:0071555: cell wall organization1.10E-03
26GO:0048574: long-day photoperiodism, flowering1.14E-03
27GO:0009751: response to salicylic acid1.16E-03
28GO:0051865: protein autoubiquitination1.28E-03
29GO:0006779: porphyrin-containing compound biosynthetic process1.43E-03
30GO:0043069: negative regulation of programmed cell death1.59E-03
31GO:0000038: very long-chain fatty acid metabolic process1.75E-03
32GO:0016024: CDP-diacylglycerol biosynthetic process1.91E-03
33GO:0018107: peptidyl-threonine phosphorylation2.08E-03
34GO:0034605: cellular response to heat2.26E-03
35GO:0010143: cutin biosynthetic process2.26E-03
36GO:0009969: xyloglucan biosynthetic process2.44E-03
37GO:0016998: cell wall macromolecule catabolic process3.20E-03
38GO:0006730: one-carbon metabolic process3.41E-03
39GO:0040007: growth3.61E-03
40GO:0009826: unidimensional cell growth4.38E-03
41GO:0010268: brassinosteroid homeostasis4.48E-03
42GO:0009646: response to absence of light4.71E-03
43GO:0009791: post-embryonic development4.94E-03
44GO:0016132: brassinosteroid biosynthetic process5.18E-03
45GO:0009639: response to red or far red light5.91E-03
46GO:0009828: plant-type cell wall loosening5.91E-03
47GO:0016125: sterol metabolic process5.91E-03
48GO:0030154: cell differentiation6.56E-03
49GO:0001666: response to hypoxia6.67E-03
50GO:0009788: negative regulation of abscisic acid-activated signaling pathway6.94E-03
51GO:0016311: dephosphorylation7.75E-03
52GO:0048767: root hair elongation8.31E-03
53GO:0009409: response to cold8.64E-03
54GO:0048527: lateral root development8.88E-03
55GO:0045087: innate immune response9.47E-03
56GO:0009873: ethylene-activated signaling pathway1.07E-02
57GO:0042546: cell wall biogenesis1.16E-02
58GO:0031347: regulation of defense response1.30E-02
59GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.30E-02
60GO:0009809: lignin biosynthetic process1.40E-02
61GO:0006486: protein glycosylation1.40E-02
62GO:0009909: regulation of flower development1.50E-02
63GO:0018105: peptidyl-serine phosphorylation1.83E-02
64GO:0009742: brassinosteroid mediated signaling pathway1.87E-02
65GO:0042744: hydrogen peroxide catabolic process2.31E-02
66GO:0016567: protein ubiquitination2.41E-02
67GO:0006633: fatty acid biosynthetic process2.47E-02
68GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.87E-02
69GO:0006470: protein dephosphorylation2.91E-02
70GO:0009733: response to auxin3.37E-02
71GO:0009860: pollen tube growth3.81E-02
72GO:0007049: cell cycle3.91E-02
73GO:0009723: response to ethylene4.01E-02
74GO:0080167: response to karrikin4.21E-02
75GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.31E-02
76GO:0046777: protein autophosphorylation4.41E-02
77GO:0045454: cell redox homeostasis4.78E-02
RankGO TermAdjusted P value
1GO:0004851: uroporphyrin-III C-methyltransferase activity0.00E+00
2GO:0080132: fatty acid alpha-hydroxylase activity4.88E-05
3GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.63E-04
4GO:0016758: transferase activity, transferring hexosyl groups2.00E-04
5GO:0010295: (+)-abscisic acid 8'-hydroxylase activity2.06E-04
6GO:0004478: methionine adenosyltransferase activity2.06E-04
7GO:0033843: xyloglucan 6-xylosyltransferase activity3.01E-04
8GO:0002020: protease binding5.13E-04
9GO:0035252: UDP-xylosyltransferase activity6.29E-04
10GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.29E-04
11GO:0004366: glycerol-3-phosphate O-acyltransferase activity6.29E-04
12GO:0003712: transcription cofactor activity2.44E-03
13GO:0008134: transcription factor binding2.81E-03
14GO:0004402: histone acetyltransferase activity4.26E-03
15GO:0016762: xyloglucan:xyloglucosyl transferase activity5.18E-03
16GO:0044212: transcription regulatory region DNA binding5.89E-03
17GO:0016759: cellulose synthase activity5.91E-03
18GO:0016791: phosphatase activity5.91E-03
19GO:0016757: transferase activity, transferring glycosyl groups7.00E-03
20GO:0004871: signal transducer activity7.06E-03
21GO:0016798: hydrolase activity, acting on glycosyl bonds7.48E-03
22GO:0016298: lipase activity1.43E-02
23GO:0031625: ubiquitin protein ligase binding1.50E-02
24GO:0015035: protein disulfide oxidoreductase activity1.83E-02
25GO:0016746: transferase activity, transferring acyl groups1.83E-02
26GO:0005516: calmodulin binding2.23E-02
27GO:0005506: iron ion binding2.95E-02
28GO:0008168: methyltransferase activity3.52E-02
29GO:0004601: peroxidase activity3.61E-02
30GO:0003682: chromatin binding3.76E-02
31GO:0004842: ubiquitin-protein transferase activity4.14E-02
32GO:0004674: protein serine/threonine kinase activity4.37E-02
33GO:0004672: protein kinase activity4.39E-02
34GO:0043565: sequence-specific DNA binding4.58E-02
35GO:0020037: heme binding4.71E-02
36GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.78E-02
RankGO TermAdjusted P value
1GO:0009505: plant-type cell wall2.86E-04
2GO:0005794: Golgi apparatus3.10E-04
3GO:0005615: extracellular space3.69E-04
4GO:0048046: apoplast4.43E-04
5GO:0009506: plasmodesma5.05E-04
6GO:0000139: Golgi membrane1.73E-03
7GO:0016021: integral component of membrane3.57E-03
8GO:0015629: actin cytoskeleton3.61E-03
9GO:0005576: extracellular region6.10E-03
10GO:0019005: SCF ubiquitin ligase complex8.03E-03
11GO:0005618: cell wall8.83E-03
12GO:0005886: plasma membrane1.96E-02
13GO:0031225: anchored component of membrane2.31E-02
14GO:0046658: anchored component of plasma membrane3.23E-02
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Gene type



Gene DE type