co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
2	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
3	GO:0010360: negative regulation of anion channel activity	0.00E+00
4	GO:0006983: ER overload response	0.00E+00
5	GO:0016559: peroxisome fission	3.13E-07
6	GO:0080120: CAAX-box protein maturation	8.09E-05
7	GO:0071586: CAAX-box protein processing	8.09E-05
8	GO:0048363: mucilage pectin metabolic process	8.09E-05
9	GO:1902361: mitochondrial pyruvate transmembrane transport	8.09E-05
10	GO:0010265: SCF complex assembly	8.09E-05
11	GO:0043069: negative regulation of programmed cell death	9.40E-05
12	GO:0000266: mitochondrial fission	1.30E-04
13	GO:0018022: peptidyl-lysine methylation	1.93E-04
14	GO:0006672: ceramide metabolic process	1.93E-04
15	GO:0006501: C-terminal protein lipidation	1.93E-04
16	GO:0043066: negative regulation of apoptotic process	1.93E-04
17	GO:0006850: mitochondrial pyruvate transport	1.93E-04
18	GO:0015865: purine nucleotide transport	1.93E-04
19	GO:0019441: tryptophan catabolic process to kynurenine	1.93E-04
20	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.00E-04
21	GO:0007005: mitochondrion organization	3.23E-04
22	GO:0045039: protein import into mitochondrial inner membrane	3.24E-04
23	GO:0010359: regulation of anion channel activity	3.24E-04
24	GO:0046902: regulation of mitochondrial membrane permeability	4.66E-04
25	GO:0080001: mucilage extrusion from seed coat	4.66E-04
26	GO:0001676: long-chain fatty acid metabolic process	4.66E-04
27	GO:0010116: positive regulation of abscisic acid biosynthetic process	4.66E-04
28	GO:0033320: UDP-D-xylose biosynthetic process	6.21E-04
29	GO:0044804: nucleophagy	6.21E-04
30	GO:0007029: endoplasmic reticulum organization	7.86E-04
31	GO:0030308: negative regulation of cell growth	7.86E-04
32	GO:0000422: mitophagy	7.86E-04
33	GO:0042732: D-xylose metabolic process	9.59E-04
34	GO:0000045: autophagosome assembly	9.59E-04
35	GO:0045040: protein import into mitochondrial outer membrane	9.59E-04
36	GO:1902456: regulation of stomatal opening	9.59E-04
37	GO:1900425: negative regulation of defense response to bacterium	9.59E-04
38	GO:0006014: D-ribose metabolic process	9.59E-04
39	GO:0009738: abscisic acid-activated signaling pathway	9.91E-04
40	GO:0048280: vesicle fusion with Golgi apparatus	1.14E-03
41	GO:0050790: regulation of catalytic activity	1.34E-03
42	GO:1902074: response to salt	1.34E-03
43	GO:1900150: regulation of defense response to fungus	1.54E-03
44	GO:2000070: regulation of response to water deprivation	1.54E-03
45	GO:0051707: response to other organism	1.74E-03
46	GO:0009827: plant-type cell wall modification	1.76E-03
47	GO:0030968: endoplasmic reticulum unfolded protein response	1.76E-03
48	GO:0048268: clathrin coat assembly	2.22E-03
49	GO:0008202: steroid metabolic process	2.22E-03
50	GO:0010629: negative regulation of gene expression	2.46E-03
51	GO:0006896: Golgi to vacuole transport	2.46E-03
52	GO:0000038: very long-chain fatty acid metabolic process	2.71E-03
53	GO:0006626: protein targeting to mitochondrion	3.24E-03
54	GO:0009225: nucleotide-sugar metabolic process	3.81E-03
55	GO:0007031: peroxisome organization	3.81E-03
56	GO:0030150: protein import into mitochondrial matrix	4.40E-03
57	GO:0031408: oxylipin biosynthetic process	5.02E-03
58	GO:0010150: leaf senescence	5.69E-03
59	GO:0006817: phosphate ion transport	6.01E-03
60	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.35E-03
61	GO:0042147: retrograde transport, endosome to Golgi	6.35E-03
62	GO:0010087: phloem or xylem histogenesis	6.70E-03
63	GO:0042752: regulation of circadian rhythm	7.42E-03
64	GO:0006623: protein targeting to vacuole	7.79E-03
65	GO:0019252: starch biosynthetic process	7.79E-03
66	GO:0006891: intra-Golgi vesicle-mediated transport	8.17E-03
67	GO:0009630: gravitropism	8.56E-03
68	GO:0007264: small GTPase mediated signal transduction	8.56E-03
69	GO:0006914: autophagy	9.34E-03
70	GO:0009816: defense response to bacterium, incompatible interaction	1.10E-02
71	GO:0046777: protein autophosphorylation	1.17E-02
72	GO:0006888: ER to Golgi vesicle-mediated transport	1.19E-02
73	GO:0010119: regulation of stomatal movement	1.41E-02
74	GO:0009853: photorespiration	1.51E-02
75	GO:0009867: jasmonic acid mediated signaling pathway	1.51E-02
76	GO:0006839: mitochondrial transport	1.65E-02
77	GO:0006897: endocytosis	1.70E-02
78	GO:0006631: fatty acid metabolic process	1.70E-02
79	GO:0008152: metabolic process	1.78E-02
80	GO:0000209: protein polyubiquitination	1.86E-02
81	GO:0051603: proteolysis involved in cellular protein catabolic process	2.29E-02
82	GO:0018105: peptidyl-serine phosphorylation	2.93E-02
83	GO:0009737: response to abscisic acid	3.54E-02
84	GO:0055085: transmembrane transport	3.64E-02
85	GO:0009790: embryo development	3.76E-02
86	GO:0010228: vegetative to reproductive phase transition of meristem	4.37E-02
87	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.58E-02
88	GO:0006470: protein dephosphorylation	4.65E-02
89	GO:0010468: regulation of gene expression	4.80E-02
90	GO:0008380: RNA splicing	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0005496: steroid binding	1.04E-05
2	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	1.93E-04
3	GO:0004061: arylformamidase activity	1.93E-04
4	GO:0008430: selenium binding	3.24E-04
5	GO:0019003: GDP binding	3.24E-04
6	GO:0050833: pyruvate transmembrane transporter activity	3.24E-04
7	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	4.66E-04
8	GO:0019776: Atg8 ligase activity	6.21E-04
9	GO:0004301: epoxide hydrolase activity	6.21E-04
10	GO:0016279: protein-lysine N-methyltransferase activity	6.21E-04
11	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	7.86E-04
12	GO:0005471: ATP:ADP antiporter activity	7.86E-04
13	GO:0051213: dioxygenase activity	8.44E-04
14	GO:0048040: UDP-glucuronate decarboxylase activity	9.59E-04
15	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.09E-03
16	GO:0070403: NAD+ binding	1.14E-03
17	GO:0004747: ribokinase activity	1.14E-03
18	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.34E-03
19	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.34E-03
20	GO:0008865: fructokinase activity	1.54E-03
21	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.54E-03
22	GO:0016301: kinase activity	1.63E-03
23	GO:0008142: oxysterol binding	1.76E-03
24	GO:0071949: FAD binding	1.98E-03
25	GO:0005515: protein binding	2.18E-03
26	GO:0005545: 1-phosphatidylinositol binding	2.46E-03
27	GO:0008559: xenobiotic-transporting ATPase activity	2.71E-03
28	GO:0008794: arsenate reductase (glutaredoxin) activity	2.71E-03
29	GO:0005543: phospholipid binding	2.71E-03
30	GO:0004521: endoribonuclease activity	2.97E-03
31	GO:0015266: protein channel activity	3.24E-03
32	GO:0004175: endopeptidase activity	3.52E-03
33	GO:0008134: transcription factor binding	4.40E-03
34	GO:0043424: protein histidine kinase binding	4.70E-03
35	GO:0046872: metal ion binding	4.78E-03
36	GO:0035251: UDP-glucosyltransferase activity	5.02E-03
37	GO:0020037: heme binding	6.03E-03
38	GO:0030276: clathrin binding	7.06E-03
39	GO:0004872: receptor activity	7.79E-03
40	GO:0004197: cysteine-type endopeptidase activity	8.56E-03
41	GO:0008483: transaminase activity	9.75E-03
42	GO:0016597: amino acid binding	1.02E-02
43	GO:0004674: protein serine/threonine kinase activity	1.04E-02
44	GO:0004497: monooxygenase activity	1.09E-02
45	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.14E-02
46	GO:0061630: ubiquitin protein ligase activity	1.15E-02
47	GO:0004683: calmodulin-dependent protein kinase activity	1.19E-02
48	GO:0004222: metalloendopeptidase activity	1.37E-02
49	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.51E-02
50	GO:0000149: SNARE binding	1.60E-02
51	GO:0003924: GTPase activity	1.62E-02
52	GO:0004364: glutathione transferase activity	1.75E-02
53	GO:0005484: SNAP receptor activity	1.80E-02
54	GO:0004842: ubiquitin-protein transferase activity	2.06E-02
55	GO:0031625: ubiquitin protein ligase binding	2.40E-02
56	GO:0008234: cysteine-type peptidase activity	2.40E-02
57	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.69E-02
58	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.69E-02
59	GO:0015035: protein disulfide oxidoreductase activity	2.93E-02
60	GO:0016758: transferase activity, transferring hexosyl groups	3.30E-02
61	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.43E-02
62	GO:0005524: ATP binding	4.08E-02
63	GO:0005516: calmodulin binding	4.30E-02
64	GO:0008194: UDP-glycosyltransferase activity	4.58E-02
65	GO:0005525: GTP binding	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0005778: peroxisomal membrane	9.96E-07
2	GO:0005741: mitochondrial outer membrane	8.34E-06
3	GO:0031305: integral component of mitochondrial inner membrane	4.08E-05
4	GO:0034274: Atg12-Atg5-Atg16 complex	1.93E-04
5	GO:0042406: extrinsic component of endoplasmic reticulum membrane	3.24E-04
6	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.84E-04
7	GO:0031461: cullin-RING ubiquitin ligase complex	4.66E-04
8	GO:0000164: protein phosphatase type 1 complex	7.86E-04
9	GO:0030140: trans-Golgi network transport vesicle	9.59E-04
10	GO:0000325: plant-type vacuole	1.25E-03
11	GO:0005777: peroxisome	1.28E-03
12	GO:0000794: condensed nuclear chromosome	1.34E-03
13	GO:0012507: ER to Golgi transport vesicle membrane	1.54E-03
14	GO:0005779: integral component of peroxisomal membrane	1.76E-03
15	GO:0005742: mitochondrial outer membrane translocase complex	1.76E-03
16	GO:0034045: pre-autophagosomal structure membrane	1.76E-03
17	GO:0005783: endoplasmic reticulum	1.90E-03
18	GO:0016021: integral component of membrane	2.84E-03
19	GO:0031307: integral component of mitochondrial outer membrane	2.97E-03
20	GO:0005829: cytosol	3.19E-03
21	GO:0005764: lysosome	3.52E-03
22	GO:0005773: vacuole	3.58E-03
23	GO:0030176: integral component of endoplasmic reticulum membrane	3.81E-03
24	GO:0045271: respiratory chain complex I	4.70E-03
25	GO:0005905: clathrin-coated pit	5.02E-03
26	GO:0005774: vacuolar membrane	5.64E-03
27	GO:0030136: clathrin-coated vesicle	6.35E-03
28	GO:0005770: late endosome	7.06E-03
29	GO:0000151: ubiquitin ligase complex	1.27E-02
30	GO:0016020: membrane	1.31E-02
31	GO:0005794: Golgi apparatus	1.45E-02
32	GO:0005743: mitochondrial inner membrane	1.50E-02
33	GO:0005819: spindle	1.60E-02
34	GO:0031201: SNARE complex	1.70E-02
35	GO:0031902: late endosome membrane	1.70E-02
36	GO:0031966: mitochondrial membrane	2.12E-02
37	GO:0005635: nuclear envelope	2.34E-02
38	GO:0005789: endoplasmic reticulum membrane	2.34E-02
39	GO:0010008: endosome membrane	2.57E-02
40	GO:0005747: mitochondrial respiratory chain complex I	2.57E-02
41	GO:0005886: plasma membrane	2.68E-02
42	GO:0012505: endomembrane system	2.81E-02
43	GO:0009524: phragmoplast	3.49E-02
44	GO:0005615: extracellular space	4.58E-02