co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080056: petal vascular tissue pattern formation	0.00E+00
2	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
3	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
4	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
5	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
6	GO:0032497: detection of lipopolysaccharide	0.00E+00
7	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
8	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
9	GO:0007160: cell-matrix adhesion	0.00E+00
10	GO:0031338: regulation of vesicle fusion	3.00E-05
11	GO:0050684: regulation of mRNA processing	7.58E-05
12	GO:0007584: response to nutrient	7.58E-05
13	GO:0052542: defense response by callose deposition	7.58E-05
14	GO:0032784: regulation of DNA-templated transcription, elongation	1.32E-04
15	GO:0090630: activation of GTPase activity	1.32E-04
16	GO:0072334: UDP-galactose transmembrane transport	1.97E-04
17	GO:0010107: potassium ion import	2.67E-04
18	GO:0006090: pyruvate metabolic process	3.42E-04
19	GO:0010337: regulation of salicylic acid metabolic process	4.20E-04
20	GO:0019509: L-methionine salvage from methylthioadenosine	5.02E-04
21	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	5.02E-04
22	GO:0006955: immune response	5.88E-04
23	GO:0030968: endoplasmic reticulum unfolded protein response	7.68E-04
24	GO:0009051: pentose-phosphate shunt, oxidative branch	8.63E-04
25	GO:0006829: zinc II ion transport	1.38E-03
26	GO:0010588: cotyledon vascular tissue pattern formation	1.38E-03
27	GO:0006108: malate metabolic process	1.38E-03
28	GO:0006446: regulation of translational initiation	1.50E-03
29	GO:0071732: cellular response to nitric oxide	1.61E-03
30	GO:0006825: copper ion transport	1.98E-03
31	GO:0051260: protein homooligomerization	2.11E-03
32	GO:0071369: cellular response to ethylene stimulus	2.38E-03
33	GO:0010118: stomatal movement	2.80E-03
34	GO:0010305: leaf vascular tissue pattern formation	2.94E-03
35	GO:0048544: recognition of pollen	3.09E-03
36	GO:0006814: sodium ion transport	3.09E-03
37	GO:0046777: protein autophosphorylation	3.25E-03
38	GO:0006635: fatty acid beta-oxidation	3.40E-03
39	GO:0071281: cellular response to iron ion	3.71E-03
40	GO:0009816: defense response to bacterium, incompatible interaction	4.53E-03
41	GO:0008219: cell death	5.23E-03
42	GO:0010119: regulation of stomatal movement	5.78E-03
43	GO:0045087: innate immune response	6.16E-03
44	GO:0006099: tricarboxylic acid cycle	6.35E-03
45	GO:0030001: metal ion transport	6.74E-03
46	GO:0006812: cation transport	8.60E-03
47	GO:0006364: rRNA processing	9.03E-03
48	GO:0006486: protein glycosylation	9.03E-03
49	GO:0006813: potassium ion transport	9.03E-03
50	GO:0006417: regulation of translation	9.70E-03
51	GO:0055085: transmembrane transport	1.00E-02
52	GO:0048367: shoot system development	1.04E-02
53	GO:0009626: plant-type hypersensitive response	1.06E-02
54	GO:0009742: brassinosteroid mediated signaling pathway	1.21E-02
55	GO:0006413: translational initiation	1.62E-02
56	GO:0008380: RNA splicing	1.93E-02
57	GO:0009826: unidimensional cell growth	2.26E-02
58	GO:0042254: ribosome biogenesis	2.36E-02
59	GO:0009723: response to ethylene	2.58E-02
60	GO:0048366: leaf development	2.61E-02
61	GO:0016192: vesicle-mediated transport	2.81E-02
62	GO:0006886: intracellular protein transport	3.15E-02
63	GO:0009751: response to salicylic acid	3.54E-02
64	GO:0048364: root development	3.69E-02
65	GO:0006397: mRNA processing	3.69E-02
66	GO:0009873: ethylene-activated signaling pathway	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0046522: S-methyl-5-thioribose kinase activity	0.00E+00
2	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
3	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	3.00E-05
4	GO:0004566: beta-glucuronidase activity	7.58E-05
5	GO:0019829: cation-transporting ATPase activity	1.32E-04
6	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	1.32E-04
7	GO:0004108: citrate (Si)-synthase activity	1.97E-04
8	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	2.67E-04
9	GO:0004470: malic enzyme activity	2.67E-04
10	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	2.67E-04
11	GO:0005459: UDP-galactose transmembrane transporter activity	3.42E-04
12	GO:0008948: oxaloacetate decarboxylase activity	3.42E-04
13	GO:0017137: Rab GTPase binding	3.42E-04
14	GO:0015491: cation:cation antiporter activity	6.76E-04
15	GO:0005267: potassium channel activity	7.68E-04
16	GO:0005375: copper ion transmembrane transporter activity	7.68E-04
17	GO:0008417: fucosyltransferase activity	8.63E-04
18	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	8.63E-04
19	GO:0004521: endoribonuclease activity	1.27E-03
20	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.38E-03
21	GO:0043424: protein histidine kinase binding	1.98E-03
22	GO:0016779: nucleotidyltransferase activity	2.25E-03
23	GO:0046873: metal ion transmembrane transporter activity	2.94E-03
24	GO:0016791: phosphatase activity	3.87E-03
25	GO:0003729: mRNA binding	4.39E-03
26	GO:0004674: protein serine/threonine kinase activity	4.69E-03
27	GO:0008375: acetylglucosaminyltransferase activity	4.70E-03
28	GO:0004721: phosphoprotein phosphatase activity	4.88E-03
29	GO:0005096: GTPase activator activity	5.41E-03
30	GO:0030145: manganese ion binding	5.78E-03
31	GO:0016887: ATPase activity	6.91E-03
32	GO:0051287: NAD binding	8.38E-03
33	GO:0005524: ATP binding	8.40E-03
34	GO:0016301: kinase activity	8.93E-03
35	GO:0031625: ubiquitin protein ligase binding	9.70E-03
36	GO:0030246: carbohydrate binding	1.07E-02
37	GO:0022857: transmembrane transporter activity	1.11E-02
38	GO:0015144: carbohydrate transmembrane transporter activity	1.54E-02
39	GO:0015297: antiporter activity	1.65E-02
40	GO:0005351: sugar:proton symporter activity	1.68E-02
41	GO:0003743: translation initiation factor activity	1.90E-02
42	GO:0042802: identical protein binding	2.02E-02
43	GO:0050660: flavin adenine dinucleotide binding	2.58E-02
44	GO:0004722: protein serine/threonine phosphatase activity	3.29E-02
45	GO:0009055: electron carrier activity	3.76E-02

Rank	GO Term	Adjusted P value
1	GO:0008305: integrin complex	0.00E+00
2	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.32E-04
3	GO:0005794: Golgi apparatus	2.00E-04
4	GO:0016021: integral component of membrane	4.20E-04
5	GO:0030173: integral component of Golgi membrane	5.02E-04
6	GO:0005886: plasma membrane	8.58E-04
7	GO:0005765: lysosomal membrane	1.16E-03
8	GO:0030176: integral component of endoplasmic reticulum membrane	1.61E-03
9	GO:0005795: Golgi stack	1.61E-03
10	GO:0005783: endoplasmic reticulum	1.93E-03
11	GO:0032580: Golgi cisterna membrane	3.87E-03
12	GO:0005789: endoplasmic reticulum membrane	4.54E-03
13	GO:0031902: late endosome membrane	6.94E-03
14	GO:0012505: endomembrane system	1.13E-02
15	GO:0005802: trans-Golgi network	1.27E-02
16	GO:0005774: vacuolar membrane	1.28E-02
17	GO:0005768: endosome	1.45E-02
18	GO:0016020: membrane	2.39E-02
19	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.48E-02