GO Enrichment Analysis of Co-expressed Genes with
AT3G61130
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 4 | GO:0017038: protein import | 0.00E+00 |
| 5 | GO:0090391: granum assembly | 2.44E-06 |
| 6 | GO:1901259: chloroplast rRNA processing | 3.84E-05 |
| 7 | GO:0010196: nonphotochemical quenching | 5.19E-05 |
| 8 | GO:0015979: photosynthesis | 7.73E-05 |
| 9 | GO:0032544: plastid translation | 8.55E-05 |
| 10 | GO:0010027: thylakoid membrane organization | 9.55E-05 |
| 11 | GO:0034337: RNA folding | 1.12E-04 |
| 12 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.12E-04 |
| 13 | GO:0043686: co-translational protein modification | 1.12E-04 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 1.22E-04 |
| 15 | GO:0016122: xanthophyll metabolic process | 2.61E-04 |
| 16 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.61E-04 |
| 17 | GO:0009915: phloem sucrose loading | 2.61E-04 |
| 18 | GO:0035304: regulation of protein dephosphorylation | 2.61E-04 |
| 19 | GO:0043255: regulation of carbohydrate biosynthetic process | 2.61E-04 |
| 20 | GO:0010207: photosystem II assembly | 2.68E-04 |
| 21 | GO:0009658: chloroplast organization | 3.37E-04 |
| 22 | GO:0009735: response to cytokinin | 3.42E-04 |
| 23 | GO:0048281: inflorescence morphogenesis | 4.32E-04 |
| 24 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 4.32E-04 |
| 25 | GO:0016998: cell wall macromolecule catabolic process | 4.53E-04 |
| 26 | GO:0010239: chloroplast mRNA processing | 6.19E-04 |
| 27 | GO:0010148: transpiration | 6.19E-04 |
| 28 | GO:1901332: negative regulation of lateral root development | 6.19E-04 |
| 29 | GO:0010109: regulation of photosynthesis | 8.23E-04 |
| 30 | GO:0006183: GTP biosynthetic process | 8.23E-04 |
| 31 | GO:0045727: positive regulation of translation | 8.23E-04 |
| 32 | GO:0015994: chlorophyll metabolic process | 8.23E-04 |
| 33 | GO:0009107: lipoate biosynthetic process | 1.04E-03 |
| 34 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.04E-03 |
| 35 | GO:0031365: N-terminal protein amino acid modification | 1.04E-03 |
| 36 | GO:0042549: photosystem II stabilization | 1.27E-03 |
| 37 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.27E-03 |
| 38 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.27E-03 |
| 39 | GO:0010337: regulation of salicylic acid metabolic process | 1.27E-03 |
| 40 | GO:0010189: vitamin E biosynthetic process | 1.52E-03 |
| 41 | GO:0010019: chloroplast-nucleus signaling pathway | 1.52E-03 |
| 42 | GO:0009395: phospholipid catabolic process | 1.78E-03 |
| 43 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.78E-03 |
| 44 | GO:0070370: cellular heat acclimation | 1.78E-03 |
| 45 | GO:1900057: positive regulation of leaf senescence | 1.78E-03 |
| 46 | GO:0010103: stomatal complex morphogenesis | 1.78E-03 |
| 47 | GO:0016559: peroxisome fission | 2.06E-03 |
| 48 | GO:0008610: lipid biosynthetic process | 2.06E-03 |
| 49 | GO:0006353: DNA-templated transcription, termination | 2.06E-03 |
| 50 | GO:0006605: protein targeting | 2.06E-03 |
| 51 | GO:0001558: regulation of cell growth | 2.35E-03 |
| 52 | GO:0010205: photoinhibition | 2.97E-03 |
| 53 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.97E-03 |
| 54 | GO:0006535: cysteine biosynthetic process from serine | 3.30E-03 |
| 55 | GO:0006032: chitin catabolic process | 3.30E-03 |
| 56 | GO:0009664: plant-type cell wall organization | 3.35E-03 |
| 57 | GO:0006364: rRNA processing | 3.59E-03 |
| 58 | GO:0009773: photosynthetic electron transport in photosystem I | 3.65E-03 |
| 59 | GO:0019684: photosynthesis, light reaction | 3.65E-03 |
| 60 | GO:0009073: aromatic amino acid family biosynthetic process | 3.65E-03 |
| 61 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.00E-03 |
| 62 | GO:0009718: anthocyanin-containing compound biosynthetic process | 4.36E-03 |
| 63 | GO:0006629: lipid metabolic process | 4.71E-03 |
| 64 | GO:0009266: response to temperature stimulus | 4.74E-03 |
| 65 | GO:0010020: chloroplast fission | 4.74E-03 |
| 66 | GO:0010053: root epidermal cell differentiation | 5.13E-03 |
| 67 | GO:0009825: multidimensional cell growth | 5.13E-03 |
| 68 | GO:0010167: response to nitrate | 5.13E-03 |
| 69 | GO:0006833: water transport | 5.52E-03 |
| 70 | GO:0010025: wax biosynthetic process | 5.52E-03 |
| 71 | GO:0019344: cysteine biosynthetic process | 5.93E-03 |
| 72 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.93E-03 |
| 73 | GO:0051302: regulation of cell division | 6.35E-03 |
| 74 | GO:0007017: microtubule-based process | 6.35E-03 |
| 75 | GO:0009695: jasmonic acid biosynthetic process | 6.35E-03 |
| 76 | GO:0031408: oxylipin biosynthetic process | 6.78E-03 |
| 77 | GO:0030245: cellulose catabolic process | 7.22E-03 |
| 78 | GO:0042744: hydrogen peroxide catabolic process | 7.26E-03 |
| 79 | GO:0009790: embryo development | 7.44E-03 |
| 80 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 7.67E-03 |
| 81 | GO:0071369: cellular response to ethylene stimulus | 7.67E-03 |
| 82 | GO:0001944: vasculature development | 7.67E-03 |
| 83 | GO:0016117: carotenoid biosynthetic process | 8.60E-03 |
| 84 | GO:0042335: cuticle development | 9.08E-03 |
| 85 | GO:0080022: primary root development | 9.08E-03 |
| 86 | GO:0034220: ion transmembrane transport | 9.08E-03 |
| 87 | GO:0000413: protein peptidyl-prolyl isomerization | 9.08E-03 |
| 88 | GO:0009646: response to absence of light | 1.01E-02 |
| 89 | GO:0005975: carbohydrate metabolic process | 1.11E-02 |
| 90 | GO:0071554: cell wall organization or biogenesis | 1.11E-02 |
| 91 | GO:0000302: response to reactive oxygen species | 1.11E-02 |
| 92 | GO:0045893: positive regulation of transcription, DNA-templated | 1.16E-02 |
| 93 | GO:0010090: trichome morphogenesis | 1.22E-02 |
| 94 | GO:0009567: double fertilization forming a zygote and endosperm | 1.27E-02 |
| 95 | GO:0009828: plant-type cell wall loosening | 1.27E-02 |
| 96 | GO:0010411: xyloglucan metabolic process | 1.62E-02 |
| 97 | GO:0009817: defense response to fungus, incompatible interaction | 1.74E-02 |
| 98 | GO:0030244: cellulose biosynthetic process | 1.74E-02 |
| 99 | GO:0010311: lateral root formation | 1.80E-02 |
| 100 | GO:0009631: cold acclimation | 1.93E-02 |
| 101 | GO:0034599: cellular response to oxidative stress | 2.12E-02 |
| 102 | GO:0006631: fatty acid metabolic process | 2.32E-02 |
| 103 | GO:0071555: cell wall organization | 2.38E-02 |
| 104 | GO:0032259: methylation | 2.40E-02 |
| 105 | GO:0042546: cell wall biogenesis | 2.53E-02 |
| 106 | GO:0009644: response to high light intensity | 2.60E-02 |
| 107 | GO:0009965: leaf morphogenesis | 2.67E-02 |
| 108 | GO:0031347: regulation of defense response | 2.82E-02 |
| 109 | GO:0042538: hyperosmotic salinity response | 2.89E-02 |
| 110 | GO:0009809: lignin biosynthetic process | 3.04E-02 |
| 111 | GO:0006096: glycolytic process | 3.43E-02 |
| 112 | GO:0009734: auxin-activated signaling pathway | 3.52E-02 |
| 113 | GO:0006810: transport | 3.84E-02 |
| 114 | GO:0009624: response to nematode | 3.91E-02 |
| 115 | GO:0009416: response to light stimulus | 4.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 4 | GO:0019146: arabinose-5-phosphate isomerase activity | 0.00E+00 |
| 5 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.33E-05 |
| 6 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.12E-04 |
| 7 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.12E-04 |
| 8 | GO:0010242: oxygen evolving activity | 1.12E-04 |
| 9 | GO:0042586: peptide deformylase activity | 1.12E-04 |
| 10 | GO:0004856: xylulokinase activity | 1.12E-04 |
| 11 | GO:0004321: fatty-acyl-CoA synthase activity | 1.12E-04 |
| 12 | GO:0003938: IMP dehydrogenase activity | 2.61E-04 |
| 13 | GO:0008805: carbon-monoxide oxygenase activity | 2.61E-04 |
| 14 | GO:0016630: protochlorophyllide reductase activity | 2.61E-04 |
| 15 | GO:0008266: poly(U) RNA binding | 2.68E-04 |
| 16 | GO:0016788: hydrolase activity, acting on ester bonds | 3.48E-04 |
| 17 | GO:0005528: FK506 binding | 3.73E-04 |
| 18 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 4.32E-04 |
| 19 | GO:0016992: lipoate synthase activity | 4.32E-04 |
| 20 | GO:0001872: (1->3)-beta-D-glucan binding | 6.19E-04 |
| 21 | GO:0016851: magnesium chelatase activity | 6.19E-04 |
| 22 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 6.19E-04 |
| 23 | GO:0043023: ribosomal large subunit binding | 6.19E-04 |
| 24 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 8.23E-04 |
| 25 | GO:0080032: methyl jasmonate esterase activity | 8.23E-04 |
| 26 | GO:0019199: transmembrane receptor protein kinase activity | 8.23E-04 |
| 27 | GO:0042277: peptide binding | 8.23E-04 |
| 28 | GO:0019843: rRNA binding | 8.52E-04 |
| 29 | GO:0003924: GTPase activity | 8.54E-04 |
| 30 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.04E-03 |
| 31 | GO:0003959: NADPH dehydrogenase activity | 1.04E-03 |
| 32 | GO:0080030: methyl indole-3-acetate esterase activity | 1.27E-03 |
| 33 | GO:0004130: cytochrome-c peroxidase activity | 1.27E-03 |
| 34 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.27E-03 |
| 35 | GO:0016688: L-ascorbate peroxidase activity | 1.27E-03 |
| 36 | GO:0030247: polysaccharide binding | 1.49E-03 |
| 37 | GO:0004124: cysteine synthase activity | 1.52E-03 |
| 38 | GO:0004620: phospholipase activity | 1.78E-03 |
| 39 | GO:0008312: 7S RNA binding | 2.06E-03 |
| 40 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.66E-03 |
| 41 | GO:0016207: 4-coumarate-CoA ligase activity | 2.66E-03 |
| 42 | GO:0003729: mRNA binding | 2.80E-03 |
| 43 | GO:0004568: chitinase activity | 3.30E-03 |
| 44 | GO:0047372: acylglycerol lipase activity | 3.65E-03 |
| 45 | GO:0005525: GTP binding | 4.30E-03 |
| 46 | GO:0009982: pseudouridine synthase activity | 4.36E-03 |
| 47 | GO:0004565: beta-galactosidase activity | 4.36E-03 |
| 48 | GO:0008081: phosphoric diester hydrolase activity | 4.36E-03 |
| 49 | GO:0043424: protein histidine kinase binding | 6.35E-03 |
| 50 | GO:0004707: MAP kinase activity | 6.78E-03 |
| 51 | GO:0004252: serine-type endopeptidase activity | 7.07E-03 |
| 52 | GO:0008810: cellulase activity | 7.67E-03 |
| 53 | GO:0008017: microtubule binding | 9.21E-03 |
| 54 | GO:0016853: isomerase activity | 1.01E-02 |
| 55 | GO:0050662: coenzyme binding | 1.01E-02 |
| 56 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.11E-02 |
| 57 | GO:0042802: identical protein binding | 1.12E-02 |
| 58 | GO:0004518: nuclease activity | 1.16E-02 |
| 59 | GO:0008168: methyltransferase activity | 1.31E-02 |
| 60 | GO:0005200: structural constituent of cytoskeleton | 1.33E-02 |
| 61 | GO:0000287: magnesium ion binding | 1.34E-02 |
| 62 | GO:0016413: O-acetyltransferase activity | 1.38E-02 |
| 63 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.39E-02 |
| 64 | GO:0015250: water channel activity | 1.44E-02 |
| 65 | GO:0016168: chlorophyll binding | 1.50E-02 |
| 66 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.62E-02 |
| 67 | GO:0008236: serine-type peptidase activity | 1.68E-02 |
| 68 | GO:0003993: acid phosphatase activity | 2.12E-02 |
| 69 | GO:0005509: calcium ion binding | 2.15E-02 |
| 70 | GO:0043621: protein self-association | 2.60E-02 |
| 71 | GO:0016491: oxidoreductase activity | 3.36E-02 |
| 72 | GO:0008289: lipid binding | 3.48E-02 |
| 73 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.51E-02 |
| 74 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.67E-02 |
| 75 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.67E-02 |
| 76 | GO:0016874: ligase activity | 3.75E-02 |
| 77 | GO:0020037: heme binding | 4.19E-02 |
| 78 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.68E-02 |
| 79 | GO:0030170: pyridoxal phosphate binding | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009534: chloroplast thylakoid | 6.80E-19 |
| 3 | GO:0009507: chloroplast | 7.46E-18 |
| 4 | GO:0009579: thylakoid | 4.09E-13 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 8.08E-12 |
| 6 | GO:0009570: chloroplast stroma | 1.21E-11 |
| 7 | GO:0009941: chloroplast envelope | 1.18E-10 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 7.03E-09 |
| 9 | GO:0031977: thylakoid lumen | 4.53E-07 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 1.47E-05 |
| 11 | GO:0019898: extrinsic component of membrane | 4.90E-05 |
| 12 | GO:0009706: chloroplast inner membrane | 6.12E-05 |
| 13 | GO:0080085: signal recognition particle, chloroplast targeting | 2.61E-04 |
| 14 | GO:0010007: magnesium chelatase complex | 4.32E-04 |
| 15 | GO:0009509: chromoplast | 4.32E-04 |
| 16 | GO:0015630: microtubule cytoskeleton | 6.19E-04 |
| 17 | GO:0010287: plastoglobule | 7.97E-04 |
| 18 | GO:0009533: chloroplast stromal thylakoid | 1.78E-03 |
| 19 | GO:0046658: anchored component of plasma membrane | 1.80E-03 |
| 20 | GO:0009536: plastid | 1.99E-03 |
| 21 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.35E-03 |
| 22 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.66E-03 |
| 23 | GO:0008180: COP9 signalosome | 2.66E-03 |
| 24 | GO:0055028: cortical microtubule | 3.30E-03 |
| 25 | GO:0032040: small-subunit processome | 4.00E-03 |
| 26 | GO:0048046: apoplast | 4.09E-03 |
| 27 | GO:0030095: chloroplast photosystem II | 4.74E-03 |
| 28 | GO:0005618: cell wall | 4.84E-03 |
| 29 | GO:0009522: photosystem I | 1.01E-02 |
| 30 | GO:0005794: Golgi apparatus | 1.53E-02 |
| 31 | GO:0005874: microtubule | 1.64E-02 |
| 32 | GO:0031969: chloroplast membrane | 1.69E-02 |
| 33 | GO:0019005: SCF ubiquitin ligase complex | 1.74E-02 |
| 34 | GO:0009707: chloroplast outer membrane | 1.74E-02 |
| 35 | GO:0005802: trans-Golgi network | 1.77E-02 |
| 36 | GO:0005768: endosome | 2.09E-02 |
| 37 | GO:0000502: proteasome complex | 3.04E-02 |
| 38 | GO:0009505: plant-type cell wall | 3.16E-02 |