Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G61080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
3GO:0017038: protein import0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
7GO:0090042: tubulin deacetylation0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
10GO:0009773: photosynthetic electron transport in photosystem I2.17E-08
11GO:0015994: chlorophyll metabolic process7.48E-07
12GO:0005983: starch catabolic process2.04E-06
13GO:0006094: gluconeogenesis2.76E-06
14GO:0030388: fructose 1,6-bisphosphate metabolic process6.16E-06
15GO:0016122: xanthophyll metabolic process6.16E-06
16GO:0010027: thylakoid membrane organization6.37E-06
17GO:0006000: fructose metabolic process2.16E-05
18GO:0000373: Group II intron splicing2.63E-05
19GO:0019252: starch biosynthetic process4.45E-05
20GO:0010021: amylopectin biosynthetic process8.40E-05
21GO:0015979: photosynthesis8.91E-05
22GO:0010207: photosystem II assembly1.06E-04
23GO:0042549: photosystem II stabilization1.88E-04
24GO:0010304: PSII associated light-harvesting complex II catabolic process1.88E-04
25GO:0010028: xanthophyll cycle3.70E-04
26GO:0034337: RNA folding3.70E-04
27GO:0005991: trehalose metabolic process3.70E-04
28GO:0071588: hydrogen peroxide mediated signaling pathway3.70E-04
29GO:1904966: positive regulation of vitamin E biosynthetic process3.70E-04
30GO:0043953: protein transport by the Tat complex3.70E-04
31GO:1904964: positive regulation of phytol biosynthetic process3.70E-04
32GO:0080051: cutin transport3.70E-04
33GO:0065002: intracellular protein transmembrane transport3.70E-04
34GO:0008610: lipid biosynthetic process4.14E-04
35GO:0006002: fructose 6-phosphate metabolic process5.06E-04
36GO:0032544: plastid translation5.06E-04
37GO:0010205: photoinhibition7.16E-04
38GO:0010289: homogalacturonan biosynthetic process8.05E-04
39GO:0010270: photosystem II oxygen evolving complex assembly8.05E-04
40GO:0010275: NAD(P)H dehydrogenase complex assembly8.05E-04
41GO:0035304: regulation of protein dephosphorylation8.05E-04
42GO:0080005: photosystem stoichiometry adjustment8.05E-04
43GO:0009915: phloem sucrose loading8.05E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process8.05E-04
45GO:0042939: tripeptide transport8.05E-04
46GO:0015908: fatty acid transport8.05E-04
47GO:0018026: peptidyl-lysine monomethylation8.05E-04
48GO:0071457: cellular response to ozone8.05E-04
49GO:0045036: protein targeting to chloroplast8.35E-04
50GO:0005986: sucrose biosynthetic process1.24E-03
51GO:1902448: positive regulation of shade avoidance1.30E-03
52GO:0090391: granum assembly1.30E-03
53GO:0051604: protein maturation1.30E-03
54GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.30E-03
55GO:0016050: vesicle organization1.30E-03
56GO:0010020: chloroplast fission1.40E-03
57GO:0071484: cellular response to light intensity1.88E-03
58GO:0009152: purine ribonucleotide biosynthetic process1.88E-03
59GO:0046653: tetrahydrofolate metabolic process1.88E-03
60GO:0009052: pentose-phosphate shunt, non-oxidative branch1.88E-03
61GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.88E-03
62GO:0010109: regulation of photosynthesis2.52E-03
63GO:0071486: cellular response to high light intensity2.52E-03
64GO:0009765: photosynthesis, light harvesting2.52E-03
65GO:0006109: regulation of carbohydrate metabolic process2.52E-03
66GO:0045727: positive regulation of translation2.52E-03
67GO:0042938: dipeptide transport2.52E-03
68GO:0010222: stem vascular tissue pattern formation2.52E-03
69GO:0032957: inositol trisphosphate metabolic process3.23E-03
70GO:0080110: sporopollenin biosynthetic process3.23E-03
71GO:0071493: cellular response to UV-B3.23E-03
72GO:0032543: mitochondrial translation3.23E-03
73GO:0045038: protein import into chloroplast thylakoid membrane3.23E-03
74GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.99E-03
75GO:0000470: maturation of LSU-rRNA3.99E-03
76GO:0009913: epidermal cell differentiation3.99E-03
77GO:0016554: cytidine to uridine editing3.99E-03
78GO:0010190: cytochrome b6f complex assembly3.99E-03
79GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.99E-03
80GO:0006828: manganese ion transport3.99E-03
81GO:0006096: glycolytic process4.35E-03
82GO:0009658: chloroplast organization4.57E-03
83GO:1901259: chloroplast rRNA processing4.81E-03
84GO:0010189: vitamin E biosynthetic process4.81E-03
85GO:0010019: chloroplast-nucleus signaling pathway4.81E-03
86GO:0055114: oxidation-reduction process5.00E-03
87GO:0016032: viral process5.07E-03
88GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.68E-03
89GO:0010196: nonphotochemical quenching5.68E-03
90GO:0009645: response to low light intensity stimulus5.68E-03
91GO:0071805: potassium ion transmembrane transport6.11E-03
92GO:0016559: peroxisome fission6.61E-03
93GO:0048564: photosystem I assembly6.61E-03
94GO:0005978: glycogen biosynthetic process6.61E-03
95GO:0009642: response to light intensity6.61E-03
96GO:0006605: protein targeting6.61E-03
97GO:0009704: de-etiolation6.61E-03
98GO:0070413: trehalose metabolism in response to stress6.61E-03
99GO:0010492: maintenance of shoot apical meristem identity6.61E-03
100GO:0009735: response to cytokinin7.06E-03
101GO:0071482: cellular response to light stimulus7.58E-03
102GO:0015996: chlorophyll catabolic process7.58E-03
103GO:0019430: removal of superoxide radicals7.58E-03
104GO:0017004: cytochrome complex assembly7.58E-03
105GO:0015995: chlorophyll biosynthetic process8.10E-03
106GO:0010206: photosystem II repair8.60E-03
107GO:0006098: pentose-phosphate shunt8.60E-03
108GO:0034765: regulation of ion transmembrane transport8.60E-03
109GO:0048507: meristem development8.60E-03
110GO:0006754: ATP biosynthetic process8.60E-03
111GO:0018298: protein-chromophore linkage8.97E-03
112GO:0009638: phototropism9.67E-03
113GO:1900865: chloroplast RNA modification9.67E-03
114GO:0005982: starch metabolic process9.67E-03
115GO:0009451: RNA modification1.14E-02
116GO:0046856: phosphatidylinositol dephosphorylation1.19E-02
117GO:0000038: very long-chain fatty acid metabolic process1.19E-02
118GO:0019684: photosynthesis, light reaction1.19E-02
119GO:0006816: calcium ion transport1.19E-02
120GO:0009073: aromatic amino acid family biosynthetic process1.19E-02
121GO:0043085: positive regulation of catalytic activity1.19E-02
122GO:0034599: cellular response to oxidative stress1.19E-02
123GO:0009750: response to fructose1.19E-02
124GO:0016485: protein processing1.19E-02
125GO:0055085: transmembrane transport1.25E-02
126GO:0006631: fatty acid metabolic process1.36E-02
127GO:0009767: photosynthetic electron transport chain1.44E-02
128GO:0010588: cotyledon vascular tissue pattern formation1.44E-02
129GO:0010628: positive regulation of gene expression1.44E-02
130GO:0009785: blue light signaling pathway1.44E-02
131GO:0006807: nitrogen compound metabolic process1.44E-02
132GO:0009718: anthocyanin-containing compound biosynthetic process1.44E-02
133GO:0009266: response to temperature stimulus1.57E-02
134GO:0019253: reductive pentose-phosphate cycle1.57E-02
135GO:0009644: response to high light intensity1.60E-02
136GO:0005985: sucrose metabolic process1.70E-02
137GO:0071732: cellular response to nitric oxide1.70E-02
138GO:0009409: response to cold1.72E-02
139GO:0006833: water transport1.84E-02
140GO:0019762: glucosinolate catabolic process1.84E-02
141GO:0010025: wax biosynthetic process1.84E-02
142GO:0005992: trehalose biosynthetic process1.98E-02
143GO:0006364: rRNA processing1.99E-02
144GO:0006810: transport2.01E-02
145GO:0019953: sexual reproduction2.12E-02
146GO:0008299: isoprenoid biosynthetic process2.12E-02
147GO:0016575: histone deacetylation2.12E-02
148GO:0006418: tRNA aminoacylation for protein translation2.12E-02
149GO:0009695: jasmonic acid biosynthetic process2.12E-02
150GO:0009768: photosynthesis, light harvesting in photosystem I2.12E-02
151GO:0005975: carbohydrate metabolic process2.14E-02
152GO:0031408: oxylipin biosynthetic process2.27E-02
153GO:0016226: iron-sulfur cluster assembly2.42E-02
154GO:0035428: hexose transmembrane transport2.42E-02
155GO:0009686: gibberellin biosynthetic process2.58E-02
156GO:0071369: cellular response to ethylene stimulus2.58E-02
157GO:0009416: response to light stimulus2.70E-02
158GO:0010584: pollen exine formation2.73E-02
159GO:0015991: ATP hydrolysis coupled proton transport3.06E-02
160GO:0042335: cuticle development3.06E-02
161GO:0042391: regulation of membrane potential3.06E-02
162GO:0034220: ion transmembrane transport3.06E-02
163GO:0000413: protein peptidyl-prolyl isomerization3.06E-02
164GO:0010268: brassinosteroid homeostasis3.23E-02
165GO:0071472: cellular response to salt stress3.23E-02
166GO:0006662: glycerol ether metabolic process3.23E-02
167GO:0010182: sugar mediated signaling pathway3.23E-02
168GO:0046323: glucose import3.23E-02
169GO:0009646: response to absence of light3.40E-02
170GO:0048544: recognition of pollen3.40E-02
171GO:0006814: sodium ion transport3.40E-02
172GO:0009791: post-embryonic development3.57E-02
173GO:0000302: response to reactive oxygen species3.75E-02
174GO:0016132: brassinosteroid biosynthetic process3.75E-02
175GO:0019761: glucosinolate biosynthetic process3.93E-02
176GO:0042744: hydrogen peroxide catabolic process4.04E-02
177GO:0030163: protein catabolic process4.11E-02
178GO:0071281: cellular response to iron ion4.11E-02
179GO:0010090: trichome morphogenesis4.11E-02
180GO:0009567: double fertilization forming a zygote and endosperm4.30E-02
181GO:0016125: sterol metabolic process4.30E-02
182GO:0008152: metabolic process4.61E-02
183GO:0001666: response to hypoxia4.87E-02
184GO:0007623: circadian rhythm4.88E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0010303: limit dextrinase activity0.00E+00
3GO:0046422: violaxanthin de-epoxidase activity0.00E+00
4GO:0043014: alpha-tubulin binding0.00E+00
5GO:0051721: protein phosphatase 2A binding0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0009976: tocopherol cyclase activity0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0004823: leucine-tRNA ligase activity0.00E+00
10GO:0051060: pullulanase activity0.00E+00
11GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
12GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.16E-06
13GO:0009011: starch synthase activity8.40E-05
14GO:0005528: FK506 binding1.71E-04
15GO:0004332: fructose-bisphosphate aldolase activity1.88E-04
16GO:0050139: nicotinate-N-glucosyltransferase activity3.70E-04
17GO:0051777: ent-kaurenoate oxidase activity3.70E-04
18GO:0004856: xylulokinase activity3.70E-04
19GO:0050308: sugar-phosphatase activity3.70E-04
20GO:0004321: fatty-acyl-CoA synthase activity3.70E-04
21GO:0019203: carbohydrate phosphatase activity3.70E-04
22GO:0010242: oxygen evolving activity3.70E-04
23GO:0034256: chlorophyll(ide) b reductase activity3.70E-04
24GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.70E-04
25GO:0015245: fatty acid transporter activity3.70E-04
26GO:0030941: chloroplast targeting sequence binding3.70E-04
27GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.78E-04
28GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.39E-04
29GO:0009977: proton motive force dependent protein transmembrane transporter activity8.05E-04
30GO:0033201: alpha-1,4-glucan synthase activity8.05E-04
31GO:0003844: 1,4-alpha-glucan branching enzyme activity8.05E-04
32GO:0016630: protochlorophyllide reductase activity8.05E-04
33GO:0042937: tripeptide transporter activity8.05E-04
34GO:0047746: chlorophyllase activity8.05E-04
35GO:0004565: beta-galactosidase activity1.24E-03
36GO:0047325: inositol tetrakisphosphate 1-kinase activity1.30E-03
37GO:0015462: ATPase-coupled protein transmembrane transporter activity1.30E-03
38GO:0043169: cation binding1.30E-03
39GO:0004373: glycogen (starch) synthase activity1.30E-03
40GO:0002161: aminoacyl-tRNA editing activity1.30E-03
41GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity1.30E-03
42GO:0004751: ribose-5-phosphate isomerase activity1.30E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.30E-03
44GO:0070402: NADPH binding1.30E-03
45GO:0008864: formyltetrahydrofolate deformylase activity1.30E-03
46GO:0008266: poly(U) RNA binding1.40E-03
47GO:0019843: rRNA binding1.43E-03
48GO:0004222: metalloendopeptidase activity1.45E-03
49GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.88E-03
50GO:0008508: bile acid:sodium symporter activity1.88E-03
51GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.88E-03
52GO:0048487: beta-tubulin binding1.88E-03
53GO:0004445: inositol-polyphosphate 5-phosphatase activity1.88E-03
54GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.88E-03
55GO:0016851: magnesium chelatase activity1.88E-03
56GO:0015079: potassium ion transmembrane transporter activity2.13E-03
57GO:0016787: hydrolase activity2.34E-03
58GO:0004176: ATP-dependent peptidase activity2.35E-03
59GO:0042936: dipeptide transporter activity2.52E-03
60GO:0051861: glycolipid binding2.52E-03
61GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.52E-03
62GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.52E-03
63GO:0004045: aminoacyl-tRNA hydrolase activity2.52E-03
64GO:0080032: methyl jasmonate esterase activity2.52E-03
65GO:0043495: protein anchor2.52E-03
66GO:0016279: protein-lysine N-methyltransferase activity2.52E-03
67GO:0003723: RNA binding2.67E-03
68GO:0003959: NADPH dehydrogenase activity3.23E-03
69GO:0016773: phosphotransferase activity, alcohol group as acceptor3.23E-03
70GO:2001070: starch binding3.99E-03
71GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.99E-03
72GO:0004556: alpha-amylase activity3.99E-03
73GO:0004130: cytochrome-c peroxidase activity3.99E-03
74GO:0016688: L-ascorbate peroxidase activity3.99E-03
75GO:0004784: superoxide dismutase activity3.99E-03
76GO:0042578: phosphoric ester hydrolase activity3.99E-03
77GO:0016853: isomerase activity4.13E-03
78GO:0050662: coenzyme binding4.13E-03
79GO:0048038: quinone binding4.74E-03
80GO:0005242: inward rectifier potassium channel activity4.81E-03
81GO:0016874: ligase activity5.10E-03
82GO:0019899: enzyme binding5.68E-03
83GO:0004620: phospholipase activity5.68E-03
84GO:0016491: oxidoreductase activity5.81E-03
85GO:0008237: metallopeptidase activity6.11E-03
86GO:0008312: 7S RNA binding6.61E-03
87GO:0052747: sinapyl alcohol dehydrogenase activity6.61E-03
88GO:0043022: ribosome binding6.61E-03
89GO:0016168: chlorophyll binding7.27E-03
90GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.58E-03
91GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.60E-03
92GO:0016207: 4-coumarate-CoA ligase activity8.60E-03
93GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.60E-03
94GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism8.60E-03
95GO:0005384: manganese ion transmembrane transporter activity9.67E-03
96GO:0030234: enzyme regulator activity1.08E-02
97GO:0008047: enzyme activator activity1.08E-02
98GO:0003824: catalytic activity1.15E-02
99GO:0047372: acylglycerol lipase activity1.19E-02
100GO:0015386: potassium:proton antiporter activity1.19E-02
101GO:0008559: xenobiotic-transporting ATPase activity1.19E-02
102GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.32E-02
103GO:0045551: cinnamyl-alcohol dehydrogenase activity1.32E-02
104GO:0009982: pseudouridine synthase activity1.44E-02
105GO:0004022: alcohol dehydrogenase (NAD) activity1.44E-02
106GO:0015095: magnesium ion transmembrane transporter activity1.44E-02
107GO:0042802: identical protein binding1.50E-02
108GO:0004535: poly(A)-specific ribonuclease activity1.57E-02
109GO:0043621: protein self-association1.60E-02
110GO:0005198: structural molecule activity1.66E-02
111GO:0031409: pigment binding1.84E-02
112GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.84E-02
113GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.84E-02
114GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.84E-02
115GO:0000287: magnesium ion binding1.88E-02
116GO:0005525: GTP binding1.95E-02
117GO:0004857: enzyme inhibitor activity1.98E-02
118GO:0004407: histone deacetylase activity1.98E-02
119GO:0051536: iron-sulfur cluster binding1.98E-02
120GO:0043424: protein histidine kinase binding2.12E-02
121GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.42E-02
122GO:0008233: peptidase activity2.47E-02
123GO:0022891: substrate-specific transmembrane transporter activity2.58E-02
124GO:0030570: pectate lyase activity2.58E-02
125GO:0005515: protein binding2.64E-02
126GO:0004812: aminoacyl-tRNA ligase activity2.90E-02
127GO:0047134: protein-disulfide reductase activity2.90E-02
128GO:0016746: transferase activity, transferring acyl groups2.92E-02
129GO:0030551: cyclic nucleotide binding3.06E-02
130GO:0005249: voltage-gated potassium channel activity3.06E-02
131GO:0004791: thioredoxin-disulfide reductase activity3.40E-02
132GO:0005355: glucose transmembrane transporter activity3.40E-02
133GO:0004518: nuclease activity3.93E-02
134GO:0003924: GTPase activity4.09E-02
135GO:0000156: phosphorelay response regulator activity4.11E-02
136GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.11E-02
137GO:0030246: carbohydrate binding4.16E-02
138GO:0016791: phosphatase activity4.30E-02
139GO:0008483: transaminase activity4.49E-02
140GO:0004519: endonuclease activity4.54E-02
141GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.55E-02
142GO:0051213: dioxygenase activity4.87E-02
143GO:0015250: water channel activity4.87E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast3.24E-52
4GO:0009535: chloroplast thylakoid membrane1.00E-30
5GO:0009534: chloroplast thylakoid1.48E-26
6GO:0009570: chloroplast stroma9.50E-20
7GO:0009941: chloroplast envelope6.50E-18
8GO:0009579: thylakoid1.57E-10
9GO:0009543: chloroplast thylakoid lumen1.90E-07
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.59E-07
11GO:0031977: thylakoid lumen2.14E-06
12GO:0010287: plastoglobule2.43E-06
13GO:0031969: chloroplast membrane3.49E-04
14GO:0031361: integral component of thylakoid membrane3.70E-04
15GO:0009782: photosystem I antenna complex3.70E-04
16GO:0009515: granal stacked thylakoid3.70E-04
17GO:0009501: amyloplast4.14E-04
18GO:0043036: starch grain8.05E-04
19GO:0080085: signal recognition particle, chloroplast targeting8.05E-04
20GO:0009897: external side of plasma membrane1.30E-03
21GO:0033281: TAT protein transport complex1.30E-03
22GO:0030095: chloroplast photosystem II1.40E-03
23GO:0009654: photosystem II oxygen evolving complex2.13E-03
24GO:0042651: thylakoid membrane2.13E-03
25GO:0009526: plastid envelope2.52E-03
26GO:0055035: plastid thylakoid membrane3.23E-03
27GO:0019898: extrinsic component of membrane4.43E-03
28GO:0016021: integral component of membrane5.39E-03
29GO:0009706: chloroplast inner membrane5.50E-03
30GO:0009533: chloroplast stromal thylakoid5.68E-03
31GO:0031359: integral component of chloroplast outer membrane5.68E-03
32GO:0030529: intracellular ribonucleoprotein complex6.87E-03
33GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.58E-03
34GO:0009707: chloroplast outer membrane8.97E-03
35GO:0032040: small-subunit processome1.32E-02
36GO:0009508: plastid chromosome1.44E-02
37GO:0030076: light-harvesting complex1.70E-02
38GO:0009532: plastid stroma2.27E-02
39GO:0009523: photosystem II3.57E-02
40GO:0005623: cell3.64E-02
41GO:0016020: membrane4.06E-02
42GO:0010319: stromule4.49E-02
43GO:0009295: nucleoid4.49E-02
44GO:0043231: intracellular membrane-bounded organelle4.61E-02
45GO:0048046: apoplast4.78E-02
46GO:0005773: vacuole4.81E-02
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Gene type



Gene DE type