Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010600: regulation of auxin biosynthetic process7.42E-07
2GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.93E-06
3GO:0010928: regulation of auxin mediated signaling pathway5.51E-06
4GO:1990641: response to iron ion starvation2.30E-05
5GO:0010017: red or far-red light signaling pathway5.66E-05
6GO:0006101: citrate metabolic process5.89E-05
7GO:0009645: response to low light intensity stimulus4.74E-04
8GO:0010161: red light signaling pathway4.74E-04
9GO:0009585: red, far-red light phototransduction4.95E-04
10GO:0009704: de-etiolation5.46E-04
11GO:0006102: isocitrate metabolic process5.46E-04
12GO:0010099: regulation of photomorphogenesis6.21E-04
13GO:0009827: plant-type cell wall modification6.21E-04
14GO:0048354: mucilage biosynthetic process involved in seed coat development7.77E-04
15GO:0055062: phosphate ion homeostasis8.59E-04
16GO:0009641: shade avoidance8.59E-04
17GO:0009718: anthocyanin-containing compound biosynthetic process1.12E-03
18GO:0009266: response to temperature stimulus1.20E-03
19GO:0009768: photosynthesis, light harvesting in photosystem I1.59E-03
20GO:0048511: rhythmic process1.70E-03
21GO:0009693: ethylene biosynthetic process1.91E-03
22GO:0042391: regulation of membrane potential2.24E-03
23GO:0044550: secondary metabolite biosynthetic process2.38E-03
24GO:0015995: chlorophyll biosynthetic process3.89E-03
25GO:0018298: protein-chromophore linkage4.17E-03
26GO:0009817: defense response to fungus, incompatible interaction4.17E-03
27GO:0000160: phosphorelay signal transduction system4.32E-03
28GO:0006099: tricarboxylic acid cycle5.05E-03
29GO:0009644: response to high light intensity6.16E-03
30GO:0008643: carbohydrate transport6.16E-03
31GO:0000165: MAPK cascade6.66E-03
32GO:0006457: protein folding7.34E-03
33GO:0006857: oligopeptide transport7.52E-03
34GO:0009909: regulation of flower development7.70E-03
35GO:0007623: circadian rhythm1.35E-02
36GO:0008380: RNA splicing1.53E-02
37GO:0009617: response to bacterium1.53E-02
38GO:0010468: regulation of gene expression1.53E-02
39GO:0009658: chloroplast organization1.84E-02
40GO:0080167: response to karrikin2.14E-02
41GO:0015979: photosynthesis2.35E-02
42GO:0045892: negative regulation of transcription, DNA-templated2.46E-02
43GO:0032259: methylation2.74E-02
44GO:0006355: regulation of transcription, DNA-templated2.94E-02
45GO:0008152: metabolic process3.03E-02
46GO:0006351: transcription, DNA-templated3.85E-02
47GO:0009416: response to light stimulus4.25E-02
48GO:0055114: oxidation-reduction process4.32E-02
49GO:0035556: intracellular signal transduction4.42E-02
RankGO TermAdjusted P value
1GO:0030275: LRR domain binding2.30E-05
2GO:0003994: aconitate hydratase activity5.89E-05
3GO:0048027: mRNA 5'-UTR binding1.55E-04
4GO:0000989: transcription factor activity, transcription factor binding6.98E-04
5GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity6.98E-04
6GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen8.83E-04
7GO:0004022: alcohol dehydrogenase (NAD) activity1.12E-03
8GO:0004565: beta-galactosidase activity1.12E-03
9GO:0030552: cAMP binding1.30E-03
10GO:0030553: cGMP binding1.30E-03
11GO:0031409: pigment binding1.39E-03
12GO:0005216: ion channel activity1.59E-03
13GO:0004707: MAP kinase activity1.70E-03
14GO:0004497: monooxygenase activity2.19E-03
15GO:0005249: voltage-gated potassium channel activity2.24E-03
16GO:0030551: cyclic nucleotide binding2.24E-03
17GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.82E-03
18GO:0008270: zinc ion binding2.85E-03
19GO:0000156: phosphorelay response regulator activity2.96E-03
20GO:0016168: chlorophyll binding3.62E-03
21GO:0051539: 4 iron, 4 sulfur cluster binding5.36E-03
22GO:0019825: oxygen binding8.07E-03
23GO:0005506: iron ion binding1.13E-02
24GO:0005215: transporter activity1.27E-02
25GO:0005351: sugar:proton symporter activity1.33E-02
26GO:0046983: protein dimerization activity1.54E-02
27GO:0008168: methyltransferase activity1.79E-02
28GO:0020037: heme binding1.82E-02
29GO:0003924: GTPase activity2.83E-02
30GO:0004519: endonuclease activity3.00E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex1.30E-03
2GO:0009522: photosystem I2.48E-03
3GO:0016021: integral component of membrane3.77E-03
4GO:0016020: membrane3.98E-03
5GO:0005681: spliceosomal complex8.06E-03
6GO:0016607: nuclear speck8.24E-03
7GO:0010287: plastoglobule1.03E-02
8GO:0005887: integral component of plasma membrane3.51E-02
9GO:0005774: vacuolar membrane3.99E-02
10GO:0048046: apoplast4.18E-02
11GO:0009579: thylakoid4.83E-02
12GO:0009534: chloroplast thylakoid4.86E-02
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Gene type



Gene DE type