co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
5	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.62E-07
6	GO:0015979: photosynthesis	2.85E-07
7	GO:0010027: thylakoid membrane organization	3.49E-07
8	GO:0006000: fructose metabolic process	6.25E-07
9	GO:0015995: chlorophyll biosynthetic process	2.56E-05
10	GO:0006002: fructose 6-phosphate metabolic process	2.60E-05
11	GO:0071482: cellular response to light stimulus	2.60E-05
12	GO:0034337: RNA folding	5.18E-05
13	GO:0006094: gluconeogenesis	7.84E-05
14	GO:0005986: sucrose biosynthetic process	7.84E-05
15	GO:0010270: photosystem II oxygen evolving complex assembly	1.27E-04
16	GO:0090391: granum assembly	2.17E-04
17	GO:0051604: protein maturation	2.17E-04
18	GO:1902448: positive regulation of shade avoidance	2.17E-04
19	GO:0019252: starch biosynthetic process	3.13E-04
20	GO:2001141: regulation of RNA biosynthetic process	3.17E-04
21	GO:0009735: response to cytokinin	3.70E-04
22	GO:0010021: amylopectin biosynthetic process	4.24E-04
23	GO:0045727: positive regulation of translation	4.24E-04
24	GO:0015994: chlorophyll metabolic process	4.24E-04
25	GO:0042254: ribosome biogenesis	6.28E-04
26	GO:0006014: D-ribose metabolic process	6.60E-04
27	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.60E-04
28	GO:0006828: manganese ion transport	6.60E-04
29	GO:0009637: response to blue light	7.83E-04
30	GO:1901259: chloroplast rRNA processing	7.87E-04
31	GO:0010196: nonphotochemical quenching	9.18E-04
32	GO:0010114: response to red light	9.96E-04
33	GO:0032544: plastid translation	1.20E-03
34	GO:0006779: porphyrin-containing compound biosynthetic process	1.50E-03
35	GO:0006782: protoporphyrinogen IX biosynthetic process	1.67E-03
36	GO:0043085: positive regulation of catalytic activity	1.84E-03
37	GO:0006352: DNA-templated transcription, initiation	1.84E-03
38	GO:0009750: response to fructose	1.84E-03
39	GO:0006816: calcium ion transport	1.84E-03
40	GO:0009773: photosynthetic electron transport in photosystem I	1.84E-03
41	GO:0005983: starch catabolic process	2.01E-03
42	GO:0019253: reductive pentose-phosphate cycle	2.38E-03
43	GO:0005985: sucrose metabolic process	2.56E-03
44	GO:0009768: photosynthesis, light harvesting in photosystem I	3.16E-03
45	GO:0016114: terpenoid biosynthetic process	3.37E-03
46	GO:0035428: hexose transmembrane transport	3.59E-03
47	GO:0006012: galactose metabolic process	3.80E-03
48	GO:0009561: megagametogenesis	4.03E-03
49	GO:0006412: translation	4.06E-03
50	GO:0009793: embryo development ending in seed dormancy	4.39E-03
51	GO:0006662: glycerol ether metabolic process	4.72E-03
52	GO:0046323: glucose import	4.72E-03
53	GO:0045454: cell redox homeostasis	7.27E-03
54	GO:0016311: dephosphorylation	8.17E-03
55	GO:0018298: protein-chromophore linkage	8.46E-03
56	GO:0010218: response to far red light	9.06E-03
57	GO:0016051: carbohydrate biosynthetic process	9.99E-03
58	GO:0034599: cellular response to oxidative stress	1.03E-02
59	GO:0006364: rRNA processing	1.47E-02
60	GO:0009742: brassinosteroid mediated signaling pathway	1.97E-02
61	GO:0006633: fatty acid biosynthetic process	2.61E-02
62	GO:0006508: proteolysis	2.68E-02
63	GO:0009451: RNA modification	2.84E-02
64	GO:0009658: chloroplast organization	3.81E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
4	GO:0019843: rRNA binding	1.58E-10
5	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.62E-07
6	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.20E-05
7	GO:0008266: poly(U) RNA binding	9.00E-05
8	GO:0016630: protochlorophyllide reductase activity	1.27E-04
9	GO:0047746: chlorophyllase activity	1.27E-04
10	GO:0033201: alpha-1,4-glucan synthase activity	1.27E-04
11	GO:0005528: FK506 binding	1.30E-04
12	GO:0004373: glycogen (starch) synthase activity	2.17E-04
13	GO:0009011: starch synthase activity	4.24E-04
14	GO:0001053: plastid sigma factor activity	4.24E-04
15	GO:0016987: sigma factor activity	4.24E-04
16	GO:0003959: NADPH dehydrogenase activity	5.39E-04
17	GO:0003735: structural constituent of ribosome	7.57E-04
18	GO:0051920: peroxiredoxin activity	7.87E-04
19	GO:0004747: ribokinase activity	7.87E-04
20	GO:0016787: hydrolase activity	8.61E-04
21	GO:0016209: antioxidant activity	1.06E-03
22	GO:0004034: aldose 1-epimerase activity	1.06E-03
23	GO:0004033: aldo-keto reductase (NADP) activity	1.06E-03
24	GO:0008865: fructokinase activity	1.06E-03
25	GO:0005384: manganese ion transmembrane transporter activity	1.50E-03
26	GO:0008047: enzyme activator activity	1.67E-03
27	GO:0016491: oxidoreductase activity	1.87E-03
28	GO:0015095: magnesium ion transmembrane transporter activity	2.19E-03
29	GO:0031072: heat shock protein binding	2.19E-03
30	GO:0031409: pigment binding	2.76E-03
31	GO:0004176: ATP-dependent peptidase activity	3.37E-03
32	GO:0047134: protein-disulfide reductase activity	4.26E-03
33	GO:0005355: glucose transmembrane transporter activity	4.96E-03
34	GO:0050662: coenzyme binding	4.96E-03
35	GO:0004791: thioredoxin-disulfide reductase activity	4.96E-03
36	GO:0016853: isomerase activity	4.96E-03
37	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.97E-03
38	GO:0008237: metallopeptidase activity	6.49E-03
39	GO:0016168: chlorophyll binding	7.31E-03
40	GO:0004721: phosphoprotein phosphatase activity	7.88E-03
41	GO:0008236: serine-type peptidase activity	8.17E-03
42	GO:0004222: metalloendopeptidase activity	9.06E-03
43	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.06E-02
44	GO:0005198: structural molecule activity	1.30E-02
45	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.47E-02
46	GO:0051082: unfolded protein binding	1.89E-02
47	GO:0015035: protein disulfide oxidoreductase activity	1.93E-02
48	GO:0030246: carbohydrate binding	2.15E-02
49	GO:0015144: carbohydrate transmembrane transporter activity	2.52E-02
50	GO:0005351: sugar:proton symporter activity	2.75E-02
51	GO:0005509: calcium ion binding	2.99E-02
52	GO:0004601: peroxidase activity	3.81E-02
53	GO:0008233: peptidase activity	4.39E-02
54	GO:0046872: metal ion binding	4.52E-02
55	GO:0003729: mRNA binding	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.37E-36
2	GO:0009570: chloroplast stroma	3.27E-21
3	GO:0009941: chloroplast envelope	6.36E-17
4	GO:0009535: chloroplast thylakoid membrane	3.15E-15
5	GO:0009534: chloroplast thylakoid	1.76E-14
6	GO:0009579: thylakoid	2.00E-11
7	GO:0009543: chloroplast thylakoid lumen	1.58E-10
8	GO:0031977: thylakoid lumen	2.79E-08
9	GO:0031969: chloroplast membrane	1.89E-07
10	GO:0010287: plastoglobule	3.34E-07
11	GO:0005840: ribosome	2.88E-05
12	GO:0009515: granal stacked thylakoid	5.18E-05
13	GO:0009547: plastid ribosome	5.18E-05
14	GO:0009654: photosystem II oxygen evolving complex	1.45E-04
15	GO:0019898: extrinsic component of membrane	3.13E-04
16	GO:0009526: plastid envelope	4.24E-04
17	GO:0055035: plastid thylakoid membrane	5.39E-04
18	GO:0009533: chloroplast stromal thylakoid	9.18E-04
19	GO:0009501: amyloplast	1.06E-03
20	GO:0000311: plastid large ribosomal subunit	2.01E-03
21	GO:0032040: small-subunit processome	2.01E-03
22	GO:0030076: light-harvesting complex	2.56E-03
23	GO:0015935: small ribosomal subunit	3.37E-03
24	GO:0009522: photosystem I	4.96E-03
25	GO:0010319: stromule	6.49E-03
26	GO:0048046: apoplast	3.31E-02