GO Enrichment Analysis of Co-expressed Genes with
AT3G60620
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 6 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 8 | GO:0015979: photosynthesis | 2.59E-09 |
| 9 | GO:0032544: plastid translation | 4.40E-07 |
| 10 | GO:0010190: cytochrome b6f complex assembly | 1.54E-05 |
| 11 | GO:0071482: cellular response to light stimulus | 5.02E-05 |
| 12 | GO:0009657: plastid organization | 5.02E-05 |
| 13 | GO:1904966: positive regulation of vitamin E biosynthetic process | 7.90E-05 |
| 14 | GO:1904964: positive regulation of phytol biosynthetic process | 7.90E-05 |
| 15 | GO:0042371: vitamin K biosynthetic process | 7.90E-05 |
| 16 | GO:0071588: hydrogen peroxide mediated signaling pathway | 7.90E-05 |
| 17 | GO:0006352: DNA-templated transcription, initiation | 1.08E-04 |
| 18 | GO:0009773: photosynthetic electron transport in photosystem I | 1.08E-04 |
| 19 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.89E-04 |
| 20 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.89E-04 |
| 21 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 3.17E-04 |
| 22 | GO:0071492: cellular response to UV-A | 3.17E-04 |
| 23 | GO:0006000: fructose metabolic process | 3.17E-04 |
| 24 | GO:0010581: regulation of starch biosynthetic process | 3.17E-04 |
| 25 | GO:0042335: cuticle development | 4.36E-04 |
| 26 | GO:0016556: mRNA modification | 4.58E-04 |
| 27 | GO:0006424: glutamyl-tRNA aminoacylation | 4.58E-04 |
| 28 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 4.58E-04 |
| 29 | GO:2001141: regulation of RNA biosynthetic process | 4.58E-04 |
| 30 | GO:0071483: cellular response to blue light | 6.09E-04 |
| 31 | GO:0071486: cellular response to high light intensity | 6.09E-04 |
| 32 | GO:0044206: UMP salvage | 6.09E-04 |
| 33 | GO:0043097: pyrimidine nucleoside salvage | 7.72E-04 |
| 34 | GO:0032543: mitochondrial translation | 7.72E-04 |
| 35 | GO:0010236: plastoquinone biosynthetic process | 7.72E-04 |
| 36 | GO:0045038: protein import into chloroplast thylakoid membrane | 7.72E-04 |
| 37 | GO:0006461: protein complex assembly | 7.72E-04 |
| 38 | GO:0009735: response to cytokinin | 8.73E-04 |
| 39 | GO:0006412: translation | 9.41E-04 |
| 40 | GO:0042549: photosystem II stabilization | 9.42E-04 |
| 41 | GO:0010358: leaf shaping | 9.42E-04 |
| 42 | GO:0006206: pyrimidine nucleobase metabolic process | 9.42E-04 |
| 43 | GO:0015995: chlorophyll biosynthetic process | 9.59E-04 |
| 44 | GO:0018298: protein-chromophore linkage | 1.06E-03 |
| 45 | GO:0042372: phylloquinone biosynthetic process | 1.12E-03 |
| 46 | GO:0030488: tRNA methylation | 1.12E-03 |
| 47 | GO:0009854: oxidative photosynthetic carbon pathway | 1.12E-03 |
| 48 | GO:0010019: chloroplast-nucleus signaling pathway | 1.12E-03 |
| 49 | GO:2000033: regulation of seed dormancy process | 1.12E-03 |
| 50 | GO:0006400: tRNA modification | 1.31E-03 |
| 51 | GO:0009772: photosynthetic electron transport in photosystem II | 1.31E-03 |
| 52 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.31E-03 |
| 53 | GO:0009867: jasmonic acid mediated signaling pathway | 1.32E-03 |
| 54 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 1.51E-03 |
| 55 | GO:0006605: protein targeting | 1.51E-03 |
| 56 | GO:0048564: photosystem I assembly | 1.51E-03 |
| 57 | GO:0019430: removal of superoxide radicals | 1.72E-03 |
| 58 | GO:0006002: fructose 6-phosphate metabolic process | 1.72E-03 |
| 59 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.18E-03 |
| 60 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.18E-03 |
| 61 | GO:0006869: lipid transport | 2.25E-03 |
| 62 | GO:0045036: protein targeting to chloroplast | 2.41E-03 |
| 63 | GO:0009073: aromatic amino acid family biosynthetic process | 2.66E-03 |
| 64 | GO:0043085: positive regulation of catalytic activity | 2.66E-03 |
| 65 | GO:0006094: gluconeogenesis | 3.18E-03 |
| 66 | GO:0005986: sucrose biosynthetic process | 3.18E-03 |
| 67 | GO:0019253: reductive pentose-phosphate cycle | 3.45E-03 |
| 68 | GO:0010207: photosystem II assembly | 3.45E-03 |
| 69 | GO:0090351: seedling development | 3.73E-03 |
| 70 | GO:0005985: sucrose metabolic process | 3.73E-03 |
| 71 | GO:0010025: wax biosynthetic process | 4.02E-03 |
| 72 | GO:0010187: negative regulation of seed germination | 4.31E-03 |
| 73 | GO:2000377: regulation of reactive oxygen species metabolic process | 4.31E-03 |
| 74 | GO:0009116: nucleoside metabolic process | 4.31E-03 |
| 75 | GO:0009863: salicylic acid mediated signaling pathway | 4.31E-03 |
| 76 | GO:0042744: hydrogen peroxide catabolic process | 4.56E-03 |
| 77 | GO:0009695: jasmonic acid biosynthetic process | 4.61E-03 |
| 78 | GO:0006418: tRNA aminoacylation for protein translation | 4.61E-03 |
| 79 | GO:0031408: oxylipin biosynthetic process | 4.92E-03 |
| 80 | GO:0016226: iron-sulfur cluster assembly | 5.24E-03 |
| 81 | GO:0009306: protein secretion | 5.89E-03 |
| 82 | GO:0009741: response to brassinosteroid | 6.92E-03 |
| 83 | GO:0010268: brassinosteroid homeostasis | 6.92E-03 |
| 84 | GO:0006457: protein folding | 7.48E-03 |
| 85 | GO:0000302: response to reactive oxygen species | 8.01E-03 |
| 86 | GO:0016132: brassinosteroid biosynthetic process | 8.01E-03 |
| 87 | GO:0016032: viral process | 8.39E-03 |
| 88 | GO:0032502: developmental process | 8.39E-03 |
| 89 | GO:0009658: chloroplast organization | 8.55E-03 |
| 90 | GO:0042254: ribosome biogenesis | 8.71E-03 |
| 91 | GO:0016125: sterol metabolic process | 9.16E-03 |
| 92 | GO:0071805: potassium ion transmembrane transport | 9.56E-03 |
| 93 | GO:0010027: thylakoid membrane organization | 1.04E-02 |
| 94 | GO:0048481: plant ovule development | 1.25E-02 |
| 95 | GO:0009817: defense response to fungus, incompatible interaction | 1.25E-02 |
| 96 | GO:0009631: cold acclimation | 1.38E-02 |
| 97 | GO:0009637: response to blue light | 1.48E-02 |
| 98 | GO:0009853: photorespiration | 1.48E-02 |
| 99 | GO:0034599: cellular response to oxidative stress | 1.52E-02 |
| 100 | GO:0008152: metabolic process | 1.73E-02 |
| 101 | GO:0010114: response to red light | 1.77E-02 |
| 102 | GO:0009644: response to high light intensity | 1.87E-02 |
| 103 | GO:0042538: hyperosmotic salinity response | 2.08E-02 |
| 104 | GO:0006813: potassium ion transport | 2.19E-02 |
| 105 | GO:0009740: gibberellic acid mediated signaling pathway | 2.69E-02 |
| 106 | GO:0055085: transmembrane transport | 3.54E-02 |
| 107 | GO:0009790: embryo development | 3.68E-02 |
| 108 | GO:0016036: cellular response to phosphate starvation | 3.94E-02 |
| 109 | GO:0006413: translational initiation | 3.94E-02 |
| 110 | GO:0009739: response to gibberellin | 4.49E-02 |
| 111 | GO:0008380: RNA splicing | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 4 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 1.71E-06 |
| 8 | GO:0001053: plastid sigma factor activity | 6.01E-06 |
| 9 | GO:0016987: sigma factor activity | 6.01E-06 |
| 10 | GO:0004321: fatty-acyl-CoA synthase activity | 7.90E-05 |
| 11 | GO:0005080: protein kinase C binding | 7.90E-05 |
| 12 | GO:0010012: steroid 22-alpha hydroxylase activity | 7.90E-05 |
| 13 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 7.90E-05 |
| 14 | GO:0016630: protochlorophyllide reductase activity | 1.89E-04 |
| 15 | GO:0004047: aminomethyltransferase activity | 1.89E-04 |
| 16 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.89E-04 |
| 17 | GO:0030267: glyoxylate reductase (NADP) activity | 3.17E-04 |
| 18 | GO:0003913: DNA photolyase activity | 3.17E-04 |
| 19 | GO:0002161: aminoacyl-tRNA editing activity | 3.17E-04 |
| 20 | GO:0022891: substrate-specific transmembrane transporter activity | 3.42E-04 |
| 21 | GO:0043023: ribosomal large subunit binding | 4.58E-04 |
| 22 | GO:0001872: (1->3)-beta-D-glucan binding | 4.58E-04 |
| 23 | GO:0004659: prenyltransferase activity | 6.09E-04 |
| 24 | GO:0004845: uracil phosphoribosyltransferase activity | 6.09E-04 |
| 25 | GO:0004045: aminoacyl-tRNA hydrolase activity | 6.09E-04 |
| 26 | GO:0043495: protein anchor | 6.09E-04 |
| 27 | GO:0003959: NADPH dehydrogenase activity | 7.72E-04 |
| 28 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 7.72E-04 |
| 29 | GO:0016168: chlorophyll binding | 8.67E-04 |
| 30 | GO:0016688: L-ascorbate peroxidase activity | 9.42E-04 |
| 31 | GO:0004130: cytochrome-c peroxidase activity | 9.42E-04 |
| 32 | GO:0004849: uridine kinase activity | 1.12E-03 |
| 33 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.12E-03 |
| 34 | GO:0019899: enzyme binding | 1.31E-03 |
| 35 | GO:0009881: photoreceptor activity | 1.31E-03 |
| 36 | GO:0016740: transferase activity | 1.34E-03 |
| 37 | GO:0008312: 7S RNA binding | 1.51E-03 |
| 38 | GO:0004033: aldo-keto reductase (NADP) activity | 1.51E-03 |
| 39 | GO:0000989: transcription factor activity, transcription factor binding | 1.95E-03 |
| 40 | GO:0016207: 4-coumarate-CoA ligase activity | 1.95E-03 |
| 41 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.97E-03 |
| 42 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.27E-03 |
| 43 | GO:0008047: enzyme activator activity | 2.41E-03 |
| 44 | GO:0047372: acylglycerol lipase activity | 2.66E-03 |
| 45 | GO:0000049: tRNA binding | 2.92E-03 |
| 46 | GO:0031072: heat shock protein binding | 3.18E-03 |
| 47 | GO:0051082: unfolded protein binding | 3.21E-03 |
| 48 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 3.45E-03 |
| 49 | GO:0008266: poly(U) RNA binding | 3.45E-03 |
| 50 | GO:0008289: lipid binding | 3.96E-03 |
| 51 | GO:0051536: iron-sulfur cluster binding | 4.31E-03 |
| 52 | GO:0005528: FK506 binding | 4.31E-03 |
| 53 | GO:0015079: potassium ion transmembrane transporter activity | 4.61E-03 |
| 54 | GO:0004812: aminoacyl-tRNA ligase activity | 6.22E-03 |
| 55 | GO:0004791: thioredoxin-disulfide reductase activity | 7.28E-03 |
| 56 | GO:0003735: structural constituent of ribosome | 8.20E-03 |
| 57 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.77E-03 |
| 58 | GO:0030247: polysaccharide binding | 1.16E-02 |
| 59 | GO:0005509: calcium ion binding | 1.19E-02 |
| 60 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.25E-02 |
| 61 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.62E-02 |
| 62 | GO:0003777: microtubule motor activity | 2.35E-02 |
| 63 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.52E-02 |
| 64 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.63E-02 |
| 65 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.63E-02 |
| 66 | GO:0016874: ligase activity | 2.69E-02 |
| 67 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.36E-02 |
| 68 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.68E-02 |
| 69 | GO:0008194: UDP-glycosyltransferase activity | 4.49E-02 |
| 70 | GO:0005525: GTP binding | 4.57E-02 |
| 71 | GO:0003743: translation initiation factor activity | 4.63E-02 |
| 72 | GO:0042802: identical protein binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 4.33E-33 |
| 3 | GO:0009570: chloroplast stroma | 1.36E-19 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.42E-17 |
| 5 | GO:0009579: thylakoid | 5.48E-13 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.65E-11 |
| 7 | GO:0009941: chloroplast envelope | 4.29E-11 |
| 8 | GO:0031977: thylakoid lumen | 2.32E-09 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 6.72E-06 |
| 10 | GO:0009523: photosystem II | 2.35E-05 |
| 11 | GO:0019898: extrinsic component of membrane | 2.35E-05 |
| 12 | GO:0009534: chloroplast thylakoid | 2.93E-05 |
| 13 | GO:0009547: plastid ribosome | 7.90E-05 |
| 14 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 7.90E-05 |
| 15 | GO:0046658: anchored component of plasma membrane | 1.18E-04 |
| 16 | GO:0005840: ribosome | 1.20E-04 |
| 17 | GO:0030095: chloroplast photosystem II | 1.65E-04 |
| 18 | GO:0080085: signal recognition particle, chloroplast targeting | 1.89E-04 |
| 19 | GO:0031225: anchored component of membrane | 3.84E-04 |
| 20 | GO:0009533: chloroplast stromal thylakoid | 1.31E-03 |
| 21 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.72E-03 |
| 22 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.95E-03 |
| 23 | GO:0000311: plastid large ribosomal subunit | 2.92E-03 |
| 24 | GO:0000312: plastid small ribosomal subunit | 3.45E-03 |
| 25 | GO:0042651: thylakoid membrane | 4.61E-03 |
| 26 | GO:0015935: small ribosomal subunit | 4.92E-03 |
| 27 | GO:0009532: plastid stroma | 4.92E-03 |
| 28 | GO:0010319: stromule | 9.56E-03 |
| 29 | GO:0030529: intracellular ribonucleoprotein complex | 1.04E-02 |
| 30 | GO:0031969: chloroplast membrane | 1.06E-02 |
| 31 | GO:0009536: plastid | 1.71E-02 |
| 32 | GO:0043231: intracellular membrane-bounded organelle | 1.73E-02 |
| 33 | GO:0005623: cell | 3.36E-02 |