Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60370

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0015805: S-adenosyl-L-methionine transport0.00E+00
10GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
11GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
12GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
13GO:0042493: response to drug0.00E+00
14GO:0042371: vitamin K biosynthetic process0.00E+00
15GO:0006399: tRNA metabolic process0.00E+00
16GO:0034337: RNA folding0.00E+00
17GO:2000505: regulation of energy homeostasis0.00E+00
18GO:0002184: cytoplasmic translational termination0.00E+00
19GO:0006412: translation8.90E-17
20GO:0015979: photosynthesis3.69E-14
21GO:0042254: ribosome biogenesis2.13E-11
22GO:0032544: plastid translation3.71E-11
23GO:0009735: response to cytokinin1.47E-09
24GO:0010207: photosystem II assembly6.10E-06
25GO:1902326: positive regulation of chlorophyll biosynthetic process8.37E-06
26GO:0010027: thylakoid membrane organization1.15E-05
27GO:0015995: chlorophyll biosynthetic process1.73E-05
28GO:0010206: photosystem II repair3.84E-05
29GO:0009658: chloroplast organization6.58E-05
30GO:0009773: photosynthetic electron transport in photosystem I8.25E-05
31GO:0010236: plastoquinone biosynthetic process1.69E-04
32GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.41E-04
33GO:0042372: phylloquinone biosynthetic process3.24E-04
34GO:1901259: chloroplast rRNA processing3.24E-04
35GO:0010196: nonphotochemical quenching4.18E-04
36GO:0009772: photosynthetic electron transport in photosystem II4.18E-04
37GO:0043489: RNA stabilization4.34E-04
38GO:0000481: maturation of 5S rRNA4.34E-04
39GO:0042759: long-chain fatty acid biosynthetic process4.34E-04
40GO:1902458: positive regulation of stomatal opening4.34E-04
41GO:0071588: hydrogen peroxide mediated signaling pathway4.34E-04
42GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.34E-04
43GO:0060627: regulation of vesicle-mediated transport4.34E-04
44GO:0046620: regulation of organ growth5.22E-04
45GO:0042335: cuticle development5.42E-04
46GO:0010205: photoinhibition8.99E-04
47GO:0001736: establishment of planar polarity9.39E-04
48GO:0006729: tetrahydrobiopterin biosynthetic process9.39E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process9.39E-04
50GO:0006568: tryptophan metabolic process9.39E-04
51GO:0010024: phytochromobilin biosynthetic process9.39E-04
52GO:0043085: positive regulation of catalytic activity1.20E-03
53GO:0016024: CDP-diacylglycerol biosynthetic process1.38E-03
54GO:0090391: granum assembly1.53E-03
55GO:0006518: peptide metabolic process1.53E-03
56GO:0010581: regulation of starch biosynthetic process1.53E-03
57GO:0006788: heme oxidation1.53E-03
58GO:0080055: low-affinity nitrate transport1.53E-03
59GO:0006006: glucose metabolic process1.56E-03
60GO:0018298: protein-chromophore linkage1.73E-03
61GO:0010143: cutin biosynthetic process1.76E-03
62GO:0009052: pentose-phosphate shunt, non-oxidative branch2.21E-03
63GO:0009650: UV protection2.21E-03
64GO:0006241: CTP biosynthetic process2.21E-03
65GO:0080170: hydrogen peroxide transmembrane transport2.21E-03
66GO:0006424: glutamyl-tRNA aminoacylation2.21E-03
67GO:1901332: negative regulation of lateral root development2.21E-03
68GO:0006165: nucleoside diphosphate phosphorylation2.21E-03
69GO:0006228: UTP biosynthetic process2.21E-03
70GO:0006636: unsaturated fatty acid biosynthetic process2.21E-03
71GO:0006986: response to unfolded protein2.21E-03
72GO:0055070: copper ion homeostasis2.21E-03
73GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.21E-03
74GO:2001141: regulation of RNA biosynthetic process2.21E-03
75GO:0071484: cellular response to light intensity2.21E-03
76GO:0051085: chaperone mediated protein folding requiring cofactor2.21E-03
77GO:0051639: actin filament network formation2.21E-03
78GO:0006183: GTP biosynthetic process2.97E-03
79GO:0045727: positive regulation of translation2.97E-03
80GO:0030104: water homeostasis2.97E-03
81GO:0044206: UMP salvage2.97E-03
82GO:0006808: regulation of nitrogen utilization2.97E-03
83GO:0051764: actin crosslink formation2.97E-03
84GO:0009765: photosynthesis, light harvesting2.97E-03
85GO:0045454: cell redox homeostasis3.19E-03
86GO:0009926: auxin polar transport3.25E-03
87GO:0009411: response to UV3.55E-03
88GO:0032543: mitochondrial translation3.80E-03
89GO:0006564: L-serine biosynthetic process3.80E-03
90GO:0043097: pyrimidine nucleoside salvage3.80E-03
91GO:0045038: protein import into chloroplast thylakoid membrane3.80E-03
92GO:0031365: N-terminal protein amino acid modification3.80E-03
93GO:0035434: copper ion transmembrane transport3.80E-03
94GO:0009306: protein secretion3.86E-03
95GO:0034220: ion transmembrane transport4.52E-03
96GO:0000413: protein peptidyl-prolyl isomerization4.52E-03
97GO:0006655: phosphatidylglycerol biosynthetic process4.71E-03
98GO:0006206: pyrimidine nucleobase metabolic process4.71E-03
99GO:0032973: amino acid export4.71E-03
100GO:0042549: photosystem II stabilization4.71E-03
101GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.68E-03
102GO:0017148: negative regulation of translation5.68E-03
103GO:0030488: tRNA methylation5.68E-03
104GO:0010189: vitamin E biosynthetic process5.68E-03
105GO:0009854: oxidative photosynthetic carbon pathway5.68E-03
106GO:0010019: chloroplast-nucleus signaling pathway5.68E-03
107GO:0009955: adaxial/abaxial pattern specification5.68E-03
108GO:0032502: developmental process6.44E-03
109GO:0006400: tRNA modification6.71E-03
110GO:0043090: amino acid import6.71E-03
111GO:0030091: protein repair7.81E-03
112GO:0006605: protein targeting7.81E-03
113GO:0042255: ribosome assembly7.81E-03
114GO:0006353: DNA-templated transcription, termination7.81E-03
115GO:0032508: DNA duplex unwinding7.81E-03
116GO:2000070: regulation of response to water deprivation7.81E-03
117GO:0045010: actin nucleation7.81E-03
118GO:0048564: photosystem I assembly7.81E-03
119GO:0009734: auxin-activated signaling pathway8.39E-03
120GO:0019430: removal of superoxide radicals8.97E-03
121GO:0007186: G-protein coupled receptor signaling pathway8.97E-03
122GO:0009657: plastid organization8.97E-03
123GO:0006526: arginine biosynthetic process8.97E-03
124GO:0071482: cellular response to light stimulus8.97E-03
125GO:0015996: chlorophyll catabolic process8.97E-03
126GO:0009245: lipid A biosynthetic process1.02E-02
127GO:0080144: amino acid homeostasis1.02E-02
128GO:0009051: pentose-phosphate shunt, oxidative branch1.02E-02
129GO:0010380: regulation of chlorophyll biosynthetic process1.15E-02
130GO:0006779: porphyrin-containing compound biosynthetic process1.15E-02
131GO:0010311: lateral root formation1.20E-02
132GO:0006782: protoporphyrinogen IX biosynthetic process1.28E-02
133GO:0006535: cysteine biosynthetic process from serine1.28E-02
134GO:0043069: negative regulation of programmed cell death1.28E-02
135GO:0048829: root cap development1.28E-02
136GO:0045036: protein targeting to chloroplast1.28E-02
137GO:0055114: oxidation-reduction process1.32E-02
138GO:0009631: cold acclimation1.32E-02
139GO:0009793: embryo development ending in seed dormancy1.32E-02
140GO:0006633: fatty acid biosynthetic process1.33E-02
141GO:0019684: photosynthesis, light reaction1.42E-02
142GO:0009089: lysine biosynthetic process via diaminopimelate1.42E-02
143GO:0006352: DNA-templated transcription, initiation1.42E-02
144GO:0018119: peptidyl-cysteine S-nitrosylation1.42E-02
145GO:0048765: root hair cell differentiation1.42E-02
146GO:0010015: root morphogenesis1.42E-02
147GO:0009637: response to blue light1.45E-02
148GO:0045490: pectin catabolic process1.50E-02
149GO:0034599: cellular response to oxidative stress1.52E-02
150GO:0045037: protein import into chloroplast stroma1.56E-02
151GO:0030001: metal ion transport1.66E-02
152GO:0030036: actin cytoskeleton organization1.71E-02
153GO:0009767: photosynthetic electron transport chain1.71E-02
154GO:0019253: reductive pentose-phosphate cycle1.86E-02
155GO:0010114: response to red light1.88E-02
156GO:0008152: metabolic process1.91E-02
157GO:0010025: wax biosynthetic process2.18E-02
158GO:0006833: water transport2.18E-02
159GO:0000027: ribosomal large subunit assembly2.35E-02
160GO:0051017: actin filament bundle assembly2.35E-02
161GO:0019344: cysteine biosynthetic process2.35E-02
162GO:0009116: nucleoside metabolic process2.35E-02
163GO:0009768: photosynthesis, light harvesting in photosystem I2.52E-02
164GO:0031408: oxylipin biosynthetic process2.70E-02
165GO:0016114: terpenoid biosynthetic process2.70E-02
166GO:0003333: amino acid transmembrane transport2.70E-02
167GO:0061077: chaperone-mediated protein folding2.70E-02
168GO:0009409: response to cold2.71E-02
169GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.44E-02
170GO:0008033: tRNA processing3.63E-02
171GO:0009958: positive gravitropism3.83E-02
172GO:0006520: cellular amino acid metabolic process3.83E-02
173GO:0006662: glycerol ether metabolic process3.83E-02
174GO:0010182: sugar mediated signaling pathway3.83E-02
175GO:0015986: ATP synthesis coupled proton transport4.03E-02
176GO:0007018: microtubule-based movement4.03E-02
177GO:0042742: defense response to bacterium4.12E-02
178GO:0000302: response to reactive oxygen species4.45E-02
179GO:0002229: defense response to oomycetes4.45E-02
180GO:0016132: brassinosteroid biosynthetic process4.45E-02
181GO:0009630: gravitropism4.66E-02
182GO:0030163: protein catabolic process4.88E-02
183GO:0010090: trichome morphogenesis4.88E-02
184GO:0009733: response to auxin4.96E-02
RankGO TermAdjusted P value
1GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
2GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
3GO:0008887: glycerate kinase activity0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
9GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
10GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
11GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
12GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
13GO:0019843: rRNA binding4.27E-26
14GO:0003735: structural constituent of ribosome2.22E-19
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.08E-09
16GO:0005528: FK506 binding7.10E-09
17GO:0016851: magnesium chelatase activity3.98E-07
18GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.89E-05
19GO:0043023: ribosomal large subunit binding6.26E-05
20GO:0043495: protein anchor1.10E-04
21GO:0008266: poly(U) RNA binding1.49E-04
22GO:0019899: enzyme binding4.18E-04
23GO:0080132: fatty acid alpha-hydroxylase activity4.34E-04
24GO:0045485: omega-6 fatty acid desaturase activity4.34E-04
25GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.34E-04
26GO:0000248: C-5 sterol desaturase activity4.34E-04
27GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.34E-04
28GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.34E-04
29GO:0004425: indole-3-glycerol-phosphate synthase activity4.34E-04
30GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.39E-04
31GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.39E-04
32GO:0004617: phosphoglycerate dehydrogenase activity9.39E-04
33GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity9.39E-04
34GO:0008047: enzyme activator activity1.05E-03
35GO:0016168: chlorophyll binding1.33E-03
36GO:0016531: copper chaperone activity1.53E-03
37GO:0019829: cation-transporting ATPase activity1.53E-03
38GO:0017150: tRNA dihydrouridine synthase activity1.53E-03
39GO:0050734: hydroxycinnamoyltransferase activity1.53E-03
40GO:0004751: ribose-5-phosphate isomerase activity1.53E-03
41GO:0030267: glyoxylate reductase (NADP) activity1.53E-03
42GO:0080054: low-affinity nitrate transmembrane transporter activity1.53E-03
43GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.73E-03
44GO:0004550: nucleoside diphosphate kinase activity2.21E-03
45GO:0008097: 5S rRNA binding2.21E-03
46GO:0052689: carboxylic ester hydrolase activity2.77E-03
47GO:0016987: sigma factor activity2.97E-03
48GO:0010328: auxin influx transmembrane transporter activity2.97E-03
49GO:0052793: pectin acetylesterase activity2.97E-03
50GO:0004392: heme oxygenase (decyclizing) activity2.97E-03
51GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.97E-03
52GO:0004659: prenyltransferase activity2.97E-03
53GO:0001053: plastid sigma factor activity2.97E-03
54GO:0004845: uracil phosphoribosyltransferase activity2.97E-03
55GO:0010011: auxin binding2.97E-03
56GO:0004345: glucose-6-phosphate dehydrogenase activity2.97E-03
57GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.97E-03
58GO:0030570: pectate lyase activity3.55E-03
59GO:0022891: substrate-specific transmembrane transporter activity3.55E-03
60GO:0016773: phosphotransferase activity, alcohol group as acceptor3.80E-03
61GO:0004040: amidase activity3.80E-03
62GO:0051287: NAD binding4.15E-03
63GO:0005509: calcium ion binding4.53E-03
64GO:0031177: phosphopantetheine binding4.71E-03
65GO:0016208: AMP binding4.71E-03
66GO:0004130: cytochrome-c peroxidase activity4.71E-03
67GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.71E-03
68GO:0016688: L-ascorbate peroxidase activity4.71E-03
69GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.71E-03
70GO:0004791: thioredoxin-disulfide reductase activity5.24E-03
71GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.68E-03
72GO:0004017: adenylate kinase activity5.68E-03
73GO:0004849: uridine kinase activity5.68E-03
74GO:0015631: tubulin binding5.68E-03
75GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.68E-03
76GO:0000035: acyl binding5.68E-03
77GO:0004124: cysteine synthase activity5.68E-03
78GO:0051920: peroxiredoxin activity5.68E-03
79GO:0008235: metalloexopeptidase activity6.71E-03
80GO:0016788: hydrolase activity, acting on ester bonds6.77E-03
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.87E-03
82GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process7.81E-03
83GO:0016209: antioxidant activity7.81E-03
84GO:0015250: water channel activity8.74E-03
85GO:0005375: copper ion transmembrane transporter activity8.97E-03
86GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.97E-03
87GO:0016829: lyase activity1.10E-02
88GO:0003723: RNA binding1.23E-02
89GO:0004177: aminopeptidase activity1.42E-02
90GO:0050661: NADP binding1.66E-02
91GO:0004022: alcohol dehydrogenase (NAD) activity1.71E-02
92GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.71E-02
93GO:0031072: heat shock protein binding1.71E-02
94GO:0016740: transferase activity1.76E-02
95GO:0042802: identical protein binding2.03E-02
96GO:0031409: pigment binding2.18E-02
97GO:0051536: iron-sulfur cluster binding2.35E-02
98GO:0051087: chaperone binding2.52E-02
99GO:0016491: oxidoreductase activity2.58E-02
100GO:0004707: MAP kinase activity2.70E-02
101GO:0003777: microtubule motor activity2.81E-02
102GO:0015171: amino acid transmembrane transporter activity2.81E-02
103GO:0005525: GTP binding2.92E-02
104GO:0003729: mRNA binding3.23E-02
105GO:0003756: protein disulfide isomerase activity3.25E-02
106GO:0003727: single-stranded RNA binding3.25E-02
107GO:0047134: protein-disulfide reductase activity3.44E-02
108GO:0051082: unfolded protein binding3.60E-02
109GO:0016746: transferase activity, transferring acyl groups3.71E-02
110GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.83E-02
111GO:0008080: N-acetyltransferase activity3.83E-02
112GO:0050662: coenzyme binding4.03E-02
113GO:0051015: actin filament binding4.88E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast1.47E-82
4GO:0009570: chloroplast stroma5.59E-63
5GO:0009941: chloroplast envelope3.92E-45
6GO:0009579: thylakoid6.14E-35
7GO:0009535: chloroplast thylakoid membrane1.09E-33
8GO:0009543: chloroplast thylakoid lumen8.48E-28
9GO:0005840: ribosome4.32E-23
10GO:0009534: chloroplast thylakoid1.58E-22
11GO:0031977: thylakoid lumen7.19E-20
12GO:0009654: photosystem II oxygen evolving complex1.70E-10
13GO:0019898: extrinsic component of membrane3.34E-09
14GO:0010007: magnesium chelatase complex8.29E-08
15GO:0030095: chloroplast photosystem II1.35E-07
16GO:0042651: thylakoid membrane1.57E-05
17GO:0031969: chloroplast membrane1.80E-05
18GO:0009536: plastid9.68E-05
19GO:0000311: plastid large ribosomal subunit1.02E-04
20GO:0015934: large ribosomal subunit3.14E-04
21GO:0043674: columella4.34E-04
22GO:0009515: granal stacked thylakoid4.34E-04
23GO:0009547: plastid ribosome4.34E-04
24GO:0009523: photosystem II7.16E-04
25GO:0030093: chloroplast photosystem I9.39E-04
26GO:0010319: stromule1.07E-03
27GO:0032040: small-subunit processome1.38E-03
28GO:0009706: chloroplast inner membrane1.46E-03
29GO:0009509: chromoplast1.53E-03
30GO:0009528: plastid inner membrane1.53E-03
31GO:0010287: plastoglobule1.90E-03
32GO:0032432: actin filament bundle2.21E-03
33GO:0015935: small ribosomal subunit2.97E-03
34GO:0009527: plastid outer membrane2.97E-03
35GO:0031209: SCAR complex4.71E-03
36GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.71E-03
37GO:0016020: membrane4.71E-03
38GO:0042807: central vacuole6.71E-03
39GO:0009986: cell surface6.71E-03
40GO:0009533: chloroplast stromal thylakoid6.71E-03
41GO:0009295: nucleoid7.77E-03
42GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.02E-02
43GO:0008180: COP9 signalosome1.02E-02
44GO:0005763: mitochondrial small ribosomal subunit1.02E-02
45GO:0009707: chloroplast outer membrane1.14E-02
46GO:0005884: actin filament1.42E-02
47GO:0009508: plastid chromosome1.71E-02
48GO:0000312: plastid small ribosomal subunit1.86E-02
49GO:0030076: light-harvesting complex2.02E-02
50GO:0009505: plant-type cell wall2.35E-02
51GO:0009532: plastid stroma2.70E-02
52GO:0005871: kinesin complex3.44E-02
53GO:0022626: cytosolic ribosome3.60E-02
54GO:0022625: cytosolic large ribosomal subunit3.63E-02
55GO:0009522: photosystem I4.03E-02
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Gene type



Gene DE type