GO Enrichment Analysis of Co-expressed Genes with
AT3G58830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 2 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 3 | GO:0036172: thiamine salvage | 0.00E+00 |
| 4 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 5 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 6 | GO:0009249: protein lipoylation | 0.00E+00 |
| 7 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 5.49E-07 |
| 8 | GO:0009767: photosynthetic electron transport chain | 4.58E-06 |
| 9 | GO:0019253: reductive pentose-phosphate cycle | 5.70E-06 |
| 10 | GO:0006659: phosphatidylserine biosynthetic process | 1.02E-04 |
| 11 | GO:0010028: xanthophyll cycle | 1.02E-04 |
| 12 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.02E-04 |
| 13 | GO:0006006: glucose metabolic process | 2.09E-04 |
| 14 | GO:0005986: sucrose biosynthetic process | 2.09E-04 |
| 15 | GO:0019388: galactose catabolic process | 2.40E-04 |
| 16 | GO:0080183: response to photooxidative stress | 2.40E-04 |
| 17 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.40E-04 |
| 18 | GO:0006000: fructose metabolic process | 3.99E-04 |
| 19 | GO:0080092: regulation of pollen tube growth | 4.41E-04 |
| 20 | GO:0016556: mRNA modification | 5.73E-04 |
| 21 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 5.73E-04 |
| 22 | GO:0033014: tetrapyrrole biosynthetic process | 5.73E-04 |
| 23 | GO:0009590: detection of gravity | 5.73E-04 |
| 24 | GO:2001141: regulation of RNA biosynthetic process | 5.73E-04 |
| 25 | GO:0006572: tyrosine catabolic process | 5.73E-04 |
| 26 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 5.73E-04 |
| 27 | GO:0010239: chloroplast mRNA processing | 5.73E-04 |
| 28 | GO:0019252: starch biosynthetic process | 7.51E-04 |
| 29 | GO:0006546: glycine catabolic process | 7.62E-04 |
| 30 | GO:0006021: inositol biosynthetic process | 7.62E-04 |
| 31 | GO:0019464: glycine decarboxylation via glycine cleavage system | 7.62E-04 |
| 32 | GO:0010236: plastoquinone biosynthetic process | 9.62E-04 |
| 33 | GO:0009229: thiamine diphosphate biosynthetic process | 9.62E-04 |
| 34 | GO:0009107: lipoate biosynthetic process | 9.62E-04 |
| 35 | GO:0016123: xanthophyll biosynthetic process | 9.62E-04 |
| 36 | GO:0006559: L-phenylalanine catabolic process | 1.17E-03 |
| 37 | GO:0009228: thiamine biosynthetic process | 1.17E-03 |
| 38 | GO:0042549: photosystem II stabilization | 1.17E-03 |
| 39 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.17E-03 |
| 40 | GO:0070814: hydrogen sulfide biosynthetic process | 1.17E-03 |
| 41 | GO:0042026: protein refolding | 1.40E-03 |
| 42 | GO:0006458: 'de novo' protein folding | 1.40E-03 |
| 43 | GO:0017148: negative regulation of translation | 1.40E-03 |
| 44 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 1.40E-03 |
| 45 | GO:0006826: iron ion transport | 1.65E-03 |
| 46 | GO:0006880: intracellular sequestering of iron ion | 1.65E-03 |
| 47 | GO:0009853: photorespiration | 1.85E-03 |
| 48 | GO:0005978: glycogen biosynthetic process | 1.90E-03 |
| 49 | GO:0052543: callose deposition in cell wall | 1.90E-03 |
| 50 | GO:0016559: peroxisome fission | 1.90E-03 |
| 51 | GO:0048564: photosystem I assembly | 1.90E-03 |
| 52 | GO:0009657: plastid organization | 2.17E-03 |
| 53 | GO:0006526: arginine biosynthetic process | 2.17E-03 |
| 54 | GO:0006002: fructose 6-phosphate metabolic process | 2.17E-03 |
| 55 | GO:0071482: cellular response to light stimulus | 2.17E-03 |
| 56 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 2.17E-03 |
| 57 | GO:0009744: response to sucrose | 2.38E-03 |
| 58 | GO:0046686: response to cadmium ion | 2.45E-03 |
| 59 | GO:0006783: heme biosynthetic process | 2.45E-03 |
| 60 | GO:0009056: catabolic process | 2.45E-03 |
| 61 | GO:0098656: anion transmembrane transport | 2.45E-03 |
| 62 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.74E-03 |
| 63 | GO:0009970: cellular response to sulfate starvation | 3.05E-03 |
| 64 | GO:0000103: sulfate assimilation | 3.05E-03 |
| 65 | GO:0010192: mucilage biosynthetic process | 3.05E-03 |
| 66 | GO:0051555: flavonol biosynthetic process | 3.05E-03 |
| 67 | GO:0006415: translational termination | 3.36E-03 |
| 68 | GO:0019684: photosynthesis, light reaction | 3.36E-03 |
| 69 | GO:0006879: cellular iron ion homeostasis | 3.36E-03 |
| 70 | GO:0006352: DNA-templated transcription, initiation | 3.36E-03 |
| 71 | GO:0048229: gametophyte development | 3.36E-03 |
| 72 | GO:0006096: glycolytic process | 3.77E-03 |
| 73 | GO:0006094: gluconeogenesis | 4.02E-03 |
| 74 | GO:0010207: photosystem II assembly | 4.37E-03 |
| 75 | GO:0008152: metabolic process | 4.58E-03 |
| 76 | GO:0010039: response to iron ion | 4.72E-03 |
| 77 | GO:0007031: peroxisome organization | 4.72E-03 |
| 78 | GO:0042343: indole glucosinolate metabolic process | 4.72E-03 |
| 79 | GO:0009833: plant-type primary cell wall biogenesis | 5.09E-03 |
| 80 | GO:0006289: nucleotide-excision repair | 5.46E-03 |
| 81 | GO:0098542: defense response to other organism | 6.24E-03 |
| 82 | GO:0061077: chaperone-mediated protein folding | 6.24E-03 |
| 83 | GO:0006730: one-carbon metabolic process | 6.64E-03 |
| 84 | GO:0016117: carotenoid biosynthetic process | 7.91E-03 |
| 85 | GO:0009416: response to light stimulus | 8.38E-03 |
| 86 | GO:0008360: regulation of cell shape | 8.80E-03 |
| 87 | GO:0006520: cellular amino acid metabolic process | 8.80E-03 |
| 88 | GO:0007059: chromosome segregation | 9.26E-03 |
| 89 | GO:0009791: post-embryonic development | 9.73E-03 |
| 90 | GO:0008654: phospholipid biosynthetic process | 9.73E-03 |
| 91 | GO:0055072: iron ion homeostasis | 9.73E-03 |
| 92 | GO:0000302: response to reactive oxygen species | 1.02E-02 |
| 93 | GO:0010583: response to cyclopentenone | 1.07E-02 |
| 94 | GO:0007264: small GTPase mediated signal transduction | 1.07E-02 |
| 95 | GO:0010286: heat acclimation | 1.22E-02 |
| 96 | GO:0051607: defense response to virus | 1.27E-02 |
| 97 | GO:0042128: nitrate assimilation | 1.43E-02 |
| 98 | GO:0080167: response to karrikin | 1.50E-02 |
| 99 | GO:0009817: defense response to fungus, incompatible interaction | 1.60E-02 |
| 100 | GO:0048481: plant ovule development | 1.60E-02 |
| 101 | GO:0030244: cellulose biosynthetic process | 1.60E-02 |
| 102 | GO:0009832: plant-type cell wall biogenesis | 1.65E-02 |
| 103 | GO:0055114: oxidation-reduction process | 1.70E-02 |
| 104 | GO:0009407: toxin catabolic process | 1.71E-02 |
| 105 | GO:0016051: carbohydrate biosynthetic process | 1.89E-02 |
| 106 | GO:0042742: defense response to bacterium | 2.05E-02 |
| 107 | GO:0071555: cell wall organization | 2.05E-02 |
| 108 | GO:0006629: lipid metabolic process | 2.22E-02 |
| 109 | GO:0009636: response to toxic substance | 2.46E-02 |
| 110 | GO:0042538: hyperosmotic salinity response | 2.66E-02 |
| 111 | GO:0048316: seed development | 3.22E-02 |
| 112 | GO:0006810: transport | 3.31E-02 |
| 113 | GO:0005975: carbohydrate metabolic process | 3.45E-02 |
| 114 | GO:0009735: response to cytokinin | 3.60E-02 |
| 115 | GO:0006396: RNA processing | 3.67E-02 |
| 116 | GO:0051726: regulation of cell cycle | 3.75E-02 |
| 117 | GO:0009742: brassinosteroid mediated signaling pathway | 3.75E-02 |
| 118 | GO:0051301: cell division | 4.28E-02 |
| 119 | GO:0009058: biosynthetic process | 4.38E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 2 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 3 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 4 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 5 | GO:0004417: hydroxyethylthiazole kinase activity | 0.00E+00 |
| 6 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 7 | GO:0004358: glutamate N-acetyltransferase activity | 0.00E+00 |
| 8 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 9 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 10 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.18E-07 |
| 11 | GO:0004325: ferrochelatase activity | 1.02E-04 |
| 12 | GO:0010313: phytochrome binding | 1.02E-04 |
| 13 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 1.02E-04 |
| 14 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.56E-04 |
| 15 | GO:0004512: inositol-3-phosphate synthase activity | 2.40E-04 |
| 16 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.40E-04 |
| 17 | GO:0004614: phosphoglucomutase activity | 2.40E-04 |
| 18 | GO:0010291: carotene beta-ring hydroxylase activity | 2.40E-04 |
| 19 | GO:0017118: lipoyltransferase activity | 2.40E-04 |
| 20 | GO:0016868: intramolecular transferase activity, phosphotransferases | 2.40E-04 |
| 21 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.40E-04 |
| 22 | GO:0016415: octanoyltransferase activity | 2.40E-04 |
| 23 | GO:0004047: aminomethyltransferase activity | 2.40E-04 |
| 24 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.40E-04 |
| 25 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.99E-04 |
| 26 | GO:0050307: sucrose-phosphate phosphatase activity | 3.99E-04 |
| 27 | GO:0004751: ribose-5-phosphate isomerase activity | 3.99E-04 |
| 28 | GO:0004781: sulfate adenylyltransferase (ATP) activity | 3.99E-04 |
| 29 | GO:0004324: ferredoxin-NADP+ reductase activity | 3.99E-04 |
| 30 | GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity | 3.99E-04 |
| 31 | GO:0016149: translation release factor activity, codon specific | 5.73E-04 |
| 32 | GO:0008199: ferric iron binding | 5.73E-04 |
| 33 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 5.73E-04 |
| 34 | GO:0001872: (1->3)-beta-D-glucan binding | 5.73E-04 |
| 35 | GO:0004322: ferroxidase activity | 5.73E-04 |
| 36 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 5.73E-04 |
| 37 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 5.73E-04 |
| 38 | GO:0048027: mRNA 5'-UTR binding | 5.73E-04 |
| 39 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 7.62E-04 |
| 40 | GO:0001053: plastid sigma factor activity | 7.62E-04 |
| 41 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 7.62E-04 |
| 42 | GO:0008453: alanine-glyoxylate transaminase activity | 7.62E-04 |
| 43 | GO:0016987: sigma factor activity | 7.62E-04 |
| 44 | GO:0004518: nuclease activity | 8.55E-04 |
| 45 | GO:0003959: NADPH dehydrogenase activity | 9.62E-04 |
| 46 | GO:0008374: O-acyltransferase activity | 9.62E-04 |
| 47 | GO:0042578: phosphoric ester hydrolase activity | 1.17E-03 |
| 48 | GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity | 1.17E-03 |
| 49 | GO:0080030: methyl indole-3-acetate esterase activity | 1.17E-03 |
| 50 | GO:0008194: UDP-glycosyltransferase activity | 1.25E-03 |
| 51 | GO:0043295: glutathione binding | 1.65E-03 |
| 52 | GO:0003843: 1,3-beta-D-glucan synthase activity | 2.17E-03 |
| 53 | GO:0003747: translation release factor activity | 2.45E-03 |
| 54 | GO:0047617: acyl-CoA hydrolase activity | 2.74E-03 |
| 55 | GO:0044183: protein binding involved in protein folding | 3.36E-03 |
| 56 | GO:0008081: phosphoric diester hydrolase activity | 4.02E-03 |
| 57 | GO:0005315: inorganic phosphate transmembrane transporter activity | 4.02E-03 |
| 58 | GO:0031072: heat shock protein binding | 4.02E-03 |
| 59 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.14E-03 |
| 60 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.14E-03 |
| 61 | GO:0008266: poly(U) RNA binding | 4.37E-03 |
| 62 | GO:0051082: unfolded protein binding | 4.52E-03 |
| 63 | GO:0005528: FK506 binding | 5.46E-03 |
| 64 | GO:0016760: cellulose synthase (UDP-forming) activity | 7.06E-03 |
| 65 | GO:0003756: protein disulfide isomerase activity | 7.48E-03 |
| 66 | GO:0008514: organic anion transmembrane transporter activity | 7.48E-03 |
| 67 | GO:0016757: transferase activity, transferring glycosyl groups | 9.57E-03 |
| 68 | GO:0019901: protein kinase binding | 9.73E-03 |
| 69 | GO:0048038: quinone binding | 1.02E-02 |
| 70 | GO:0016759: cellulose synthase activity | 1.17E-02 |
| 71 | GO:0000287: magnesium ion binding | 1.19E-02 |
| 72 | GO:0008483: transaminase activity | 1.22E-02 |
| 73 | GO:0016788: hydrolase activity, acting on ester bonds | 1.23E-02 |
| 74 | GO:0016597: amino acid binding | 1.27E-02 |
| 75 | GO:0030247: polysaccharide binding | 1.48E-02 |
| 76 | GO:0016787: hydrolase activity | 1.55E-02 |
| 77 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.71E-02 |
| 78 | GO:0050897: cobalt ion binding | 1.77E-02 |
| 79 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.89E-02 |
| 80 | GO:0005506: iron ion binding | 2.01E-02 |
| 81 | GO:0050661: NADP binding | 2.07E-02 |
| 82 | GO:0004364: glutathione transferase activity | 2.20E-02 |
| 83 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.39E-02 |
| 84 | GO:0004519: endonuclease activity | 2.42E-02 |
| 85 | GO:0005198: structural molecule activity | 2.46E-02 |
| 86 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.52E-02 |
| 87 | GO:0051287: NAD binding | 2.59E-02 |
| 88 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.80E-02 |
| 89 | GO:0004650: polygalacturonase activity | 3.37E-02 |
| 90 | GO:0020037: heme binding | 3.62E-02 |
| 91 | GO:0016746: transferase activity, transferring acyl groups | 3.67E-02 |
| 92 | GO:0016758: transferase activity, transferring hexosyl groups | 4.14E-02 |
| 93 | GO:0019843: rRNA binding | 4.22E-02 |
| 94 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.30E-02 |
| 95 | GO:0016829: lyase activity | 4.46E-02 |
| 96 | GO:0030170: pyridoxal phosphate binding | 4.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.39E-18 |
| 3 | GO:0009570: chloroplast stroma | 4.82E-11 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 5.06E-11 |
| 5 | GO:0009941: chloroplast envelope | 5.39E-10 |
| 6 | GO:0010319: stromule | 6.72E-05 |
| 7 | GO:0009534: chloroplast thylakoid | 7.20E-05 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 9.24E-05 |
| 9 | GO:0030095: chloroplast photosystem II | 2.37E-04 |
| 10 | GO:0045254: pyruvate dehydrogenase complex | 2.40E-04 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 3.67E-04 |
| 12 | GO:0009579: thylakoid | 4.48E-04 |
| 13 | GO:0005960: glycine cleavage complex | 5.73E-04 |
| 14 | GO:0009543: chloroplast thylakoid lumen | 7.34E-04 |
| 15 | GO:0019898: extrinsic component of membrane | 7.51E-04 |
| 16 | GO:0043231: intracellular membrane-bounded organelle | 8.26E-04 |
| 17 | GO:0048046: apoplast | 9.32E-04 |
| 18 | GO:0055035: plastid thylakoid membrane | 9.62E-04 |
| 19 | GO:0009840: chloroplastic endopeptidase Clp complex | 1.40E-03 |
| 20 | GO:0005779: integral component of peroxisomal membrane | 2.17E-03 |
| 21 | GO:0000148: 1,3-beta-D-glucan synthase complex | 2.17E-03 |
| 22 | GO:0031969: chloroplast membrane | 2.47E-03 |
| 23 | GO:0016324: apical plasma membrane | 3.05E-03 |
| 24 | GO:0005765: lysosomal membrane | 3.36E-03 |
| 25 | GO:0009508: plastid chromosome | 4.02E-03 |
| 26 | GO:0005759: mitochondrial matrix | 7.10E-03 |
| 27 | GO:0009523: photosystem II | 9.73E-03 |
| 28 | GO:0005777: peroxisome | 9.99E-03 |
| 29 | GO:0009295: nucleoid | 1.22E-02 |
| 30 | GO:0005778: peroxisomal membrane | 1.22E-02 |
| 31 | GO:0005829: cytosol | 1.89E-02 |
| 32 | GO:0005819: spindle | 2.01E-02 |
| 33 | GO:0031902: late endosome membrane | 2.13E-02 |
| 34 | GO:0031977: thylakoid lumen | 2.13E-02 |
| 35 | GO:0005747: mitochondrial respiratory chain complex I | 3.22E-02 |
| 36 | GO:0009706: chloroplast inner membrane | 3.59E-02 |
| 37 | GO:0010287: plastoglobule | 4.06E-02 |