GO Enrichment Analysis of Co-expressed Genes with
AT3G58700
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 2 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 3 | GO:0006412: translation | 8.40E-85 |
| 4 | GO:0042254: ribosome biogenesis | 9.70E-37 |
| 5 | GO:0000028: ribosomal small subunit assembly | 1.95E-09 |
| 6 | GO:0000027: ribosomal large subunit assembly | 1.03E-07 |
| 7 | GO:0002181: cytoplasmic translation | 1.76E-06 |
| 8 | GO:0009735: response to cytokinin | 2.02E-06 |
| 9 | GO:0006407: rRNA export from nucleus | 9.33E-05 |
| 10 | GO:0031120: snRNA pseudouridine synthesis | 9.33E-05 |
| 11 | GO:0031118: rRNA pseudouridine synthesis | 9.33E-05 |
| 12 | GO:0030490: maturation of SSU-rRNA | 9.33E-05 |
| 13 | GO:0000494: box C/D snoRNA 3'-end processing | 9.33E-05 |
| 14 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.33E-05 |
| 15 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.33E-05 |
| 16 | GO:1990258: histone glutamine methylation | 9.33E-05 |
| 17 | GO:0006626: protein targeting to mitochondrion | 1.83E-04 |
| 18 | GO:0009967: positive regulation of signal transduction | 2.20E-04 |
| 19 | GO:0006364: rRNA processing | 2.99E-04 |
| 20 | GO:1902626: assembly of large subunit precursor of preribosome | 3.67E-04 |
| 21 | GO:0010476: gibberellin mediated signaling pathway | 3.67E-04 |
| 22 | GO:0042256: mature ribosome assembly | 3.67E-04 |
| 23 | GO:0090506: axillary shoot meristem initiation | 3.67E-04 |
| 24 | GO:0007004: telomere maintenance via telomerase | 5.28E-04 |
| 25 | GO:0070301: cellular response to hydrogen peroxide | 5.28E-04 |
| 26 | GO:0006241: CTP biosynthetic process | 5.28E-04 |
| 27 | GO:0006165: nucleoside diphosphate phosphorylation | 5.28E-04 |
| 28 | GO:0006228: UTP biosynthetic process | 5.28E-04 |
| 29 | GO:0006164: purine nucleotide biosynthetic process | 5.28E-04 |
| 30 | GO:2000032: regulation of secondary shoot formation | 7.02E-04 |
| 31 | GO:0042274: ribosomal small subunit biogenesis | 7.02E-04 |
| 32 | GO:0006183: GTP biosynthetic process | 7.02E-04 |
| 33 | GO:0071493: cellular response to UV-B | 8.88E-04 |
| 34 | GO:0031167: rRNA methylation | 8.88E-04 |
| 35 | GO:0009793: embryo development ending in seed dormancy | 1.02E-03 |
| 36 | GO:0009955: adaxial/abaxial pattern specification | 1.29E-03 |
| 37 | GO:0000911: cytokinesis by cell plate formation | 1.29E-03 |
| 38 | GO:0009423: chorismate biosynthetic process | 1.29E-03 |
| 39 | GO:0009396: folic acid-containing compound biosynthetic process | 1.51E-03 |
| 40 | GO:0001522: pseudouridine synthesis | 1.75E-03 |
| 41 | GO:0001558: regulation of cell growth | 2.00E-03 |
| 42 | GO:0001510: RNA methylation | 2.00E-03 |
| 43 | GO:0006379: mRNA cleavage | 2.25E-03 |
| 44 | GO:0006189: 'de novo' IMP biosynthetic process | 2.25E-03 |
| 45 | GO:0009965: leaf morphogenesis | 2.36E-03 |
| 46 | GO:0000387: spliceosomal snRNP assembly | 2.52E-03 |
| 47 | GO:0035999: tetrahydrofolate interconversion | 2.52E-03 |
| 48 | GO:0006414: translational elongation | 2.54E-03 |
| 49 | GO:0009073: aromatic amino acid family biosynthetic process | 3.09E-03 |
| 50 | GO:0006820: anion transport | 3.38E-03 |
| 51 | GO:0010102: lateral root morphogenesis | 3.69E-03 |
| 52 | GO:0048467: gynoecium development | 4.01E-03 |
| 53 | GO:0080188: RNA-directed DNA methylation | 4.33E-03 |
| 54 | GO:0030150: protein import into mitochondrial matrix | 5.01E-03 |
| 55 | GO:0051302: regulation of cell division | 5.36E-03 |
| 56 | GO:0007005: mitochondrion organization | 6.09E-03 |
| 57 | GO:0040007: growth | 6.47E-03 |
| 58 | GO:0071215: cellular response to abscisic acid stimulus | 6.47E-03 |
| 59 | GO:0009651: response to salt stress | 7.48E-03 |
| 60 | GO:0008033: tRNA processing | 7.65E-03 |
| 61 | GO:0000413: protein peptidyl-prolyl isomerization | 7.65E-03 |
| 62 | GO:0046686: response to cadmium ion | 7.92E-03 |
| 63 | GO:0010197: polar nucleus fusion | 8.06E-03 |
| 64 | GO:0009749: response to glucose | 8.90E-03 |
| 65 | GO:0032502: developmental process | 9.78E-03 |
| 66 | GO:0010090: trichome morphogenesis | 1.02E-02 |
| 67 | GO:0010252: auxin homeostasis | 1.07E-02 |
| 68 | GO:0006811: ion transport | 1.56E-02 |
| 69 | GO:0010043: response to zinc ion | 1.62E-02 |
| 70 | GO:0009853: photorespiration | 1.73E-02 |
| 71 | GO:0008283: cell proliferation | 2.07E-02 |
| 72 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.37E-02 |
| 73 | GO:0009409: response to cold | 2.55E-02 |
| 74 | GO:0006417: regulation of translation | 2.75E-02 |
| 75 | GO:0009734: auxin-activated signaling pathway | 2.76E-02 |
| 76 | GO:0000398: mRNA splicing, via spliceosome | 3.64E-02 |
| 77 | GO:0009845: seed germination | 4.07E-02 |
| 78 | GO:0006413: translational initiation | 4.61E-02 |
| 79 | GO:0010228: vegetative to reproductive phase transition of meristem | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 3 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 4 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 7.46E-100 |
| 6 | GO:0003729: mRNA binding | 1.44E-28 |
| 7 | GO:0019843: rRNA binding | 3.03E-06 |
| 8 | GO:0030515: snoRNA binding | 3.89E-05 |
| 9 | GO:1990259: histone-glutamine methyltransferase activity | 9.33E-05 |
| 10 | GO:0070034: telomerase RNA binding | 2.20E-04 |
| 11 | GO:0005078: MAP-kinase scaffold activity | 2.20E-04 |
| 12 | GO:0008649: rRNA methyltransferase activity | 3.67E-04 |
| 13 | GO:0070180: large ribosomal subunit rRNA binding | 3.67E-04 |
| 14 | GO:0032947: protein complex scaffold | 3.67E-04 |
| 15 | GO:0070181: small ribosomal subunit rRNA binding | 3.67E-04 |
| 16 | GO:0004550: nucleoside diphosphate kinase activity | 5.28E-04 |
| 17 | GO:0008097: 5S rRNA binding | 5.28E-04 |
| 18 | GO:0003723: RNA binding | 1.19E-03 |
| 19 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.30E-03 |
| 20 | GO:0008235: metalloexopeptidase activity | 1.51E-03 |
| 21 | GO:0003746: translation elongation factor activity | 1.64E-03 |
| 22 | GO:0015288: porin activity | 1.75E-03 |
| 23 | GO:0008308: voltage-gated anion channel activity | 2.00E-03 |
| 24 | GO:0015266: protein channel activity | 3.69E-03 |
| 25 | GO:0010181: FMN binding | 8.47E-03 |
| 26 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.31E-02 |
| 27 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.55E-02 |
| 28 | GO:0005515: protein binding | 3.75E-02 |
| 29 | GO:0005507: copper ion binding | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 3 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 4 | GO:0022626: cytosolic ribosome | 3.02E-79 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 6.18E-64 |
| 6 | GO:0005840: ribosome | 2.02E-60 |
| 7 | GO:0005730: nucleolus | 4.22E-36 |
| 8 | GO:0022627: cytosolic small ribosomal subunit | 1.73E-33 |
| 9 | GO:0005737: cytoplasm | 2.80E-25 |
| 10 | GO:0009506: plasmodesma | 8.59E-25 |
| 11 | GO:0005829: cytosol | 2.13E-24 |
| 12 | GO:0015934: large ribosomal subunit | 2.67E-19 |
| 13 | GO:0016020: membrane | 1.08E-13 |
| 14 | GO:0005774: vacuolar membrane | 4.26E-09 |
| 15 | GO:0005773: vacuole | 5.23E-09 |
| 16 | GO:0005618: cell wall | 9.72E-08 |
| 17 | GO:0005886: plasma membrane | 1.22E-06 |
| 18 | GO:0015935: small ribosomal subunit | 1.15E-05 |
| 19 | GO:0009507: chloroplast | 2.35E-05 |
| 20 | GO:0030686: 90S preribosome | 9.33E-05 |
| 21 | GO:0015030: Cajal body | 9.72E-05 |
| 22 | GO:0034719: SMN-Sm protein complex | 3.67E-04 |
| 23 | GO:0005853: eukaryotic translation elongation factor 1 complex | 3.67E-04 |
| 24 | GO:0031429: box H/ACA snoRNP complex | 5.28E-04 |
| 25 | GO:0005682: U5 snRNP | 7.02E-04 |
| 26 | GO:0005687: U4 snRNP | 8.88E-04 |
| 27 | GO:0097526: spliceosomal tri-snRNP complex | 8.88E-04 |
| 28 | GO:0031428: box C/D snoRNP complex | 1.08E-03 |
| 29 | GO:0005689: U12-type spliceosomal complex | 1.29E-03 |
| 30 | GO:0071004: U2-type prespliceosome | 1.75E-03 |
| 31 | GO:0046930: pore complex | 2.00E-03 |
| 32 | GO:0005742: mitochondrial outer membrane translocase complex | 2.00E-03 |
| 33 | GO:0005685: U1 snRNP | 2.25E-03 |
| 34 | GO:0071011: precatalytic spliceosome | 2.52E-03 |
| 35 | GO:0005686: U2 snRNP | 2.80E-03 |
| 36 | GO:0000418: DNA-directed RNA polymerase IV complex | 2.80E-03 |
| 37 | GO:0071013: catalytic step 2 spliceosome | 3.09E-03 |
| 38 | GO:0048471: perinuclear region of cytoplasm | 3.09E-03 |
| 39 | GO:0005852: eukaryotic translation initiation factor 3 complex | 3.09E-03 |
| 40 | GO:0032040: small-subunit processome | 3.38E-03 |
| 41 | GO:0005665: DNA-directed RNA polymerase II, core complex | 3.38E-03 |
| 42 | GO:0019013: viral nucleocapsid | 3.69E-03 |
| 43 | GO:0000419: DNA-directed RNA polymerase V complex | 4.67E-03 |
| 44 | GO:0005758: mitochondrial intermembrane space | 5.01E-03 |
| 45 | GO:0005741: mitochondrial outer membrane | 5.72E-03 |
| 46 | GO:0016592: mediator complex | 9.78E-03 |
| 47 | GO:0030529: intracellular ribonucleoprotein complex | 1.21E-02 |
| 48 | GO:0005743: mitochondrial inner membrane | 1.82E-02 |
| 49 | GO:0005681: spliceosomal complex | 2.88E-02 |
| 50 | GO:0005834: heterotrimeric G-protein complex | 3.01E-02 |
| 51 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.49E-02 |