co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G57660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0039694: viral RNA genome replication	0.00E+00
2	GO:0080178: 5-carbamoylmethyl uridine residue modification	1.77E-05
3	GO:0045905: positive regulation of translational termination	4.61E-05
4	GO:0031538: negative regulation of anthocyanin metabolic process	4.61E-05
5	GO:0045901: positive regulation of translational elongation	4.61E-05
6	GO:0010155: regulation of proton transport	4.61E-05
7	GO:0006452: translational frameshifting	4.61E-05
8	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.61E-05
9	GO:0032784: regulation of DNA-templated transcription, elongation	8.18E-05
10	GO:0071494: cellular response to UV-C	8.18E-05
11	GO:0048530: fruit morphogenesis	1.23E-04
12	GO:0007276: gamete generation	1.23E-04
13	GO:0002098: tRNA wobble uridine modification	1.69E-04
14	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.27E-04
15	GO:0006400: tRNA modification	3.84E-04
16	GO:0001522: pseudouridine synthesis	4.43E-04
17	GO:0000028: ribosomal small subunit assembly	4.43E-04
18	GO:0010928: regulation of auxin mediated signaling pathway	4.43E-04
19	GO:0035265: organ growth	4.43E-04
20	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.43E-04
21	GO:2000024: regulation of leaf development	5.68E-04
22	GO:0010582: floral meristem determinacy	8.38E-04
23	GO:0030150: protein import into mitochondrial matrix	1.21E-03
24	GO:0051302: regulation of cell division	1.29E-03
25	GO:0042254: ribosome biogenesis	1.32E-03
26	GO:0006334: nucleosome assembly	1.37E-03
27	GO:0071215: cellular response to abscisic acid stimulus	1.54E-03
28	GO:0010089: xylem development	1.63E-03
29	GO:0008284: positive regulation of cell proliferation	1.72E-03
30	GO:0010501: RNA secondary structure unwinding	1.81E-03
31	GO:0080156: mitochondrial mRNA modification	2.19E-03
32	GO:0031047: gene silencing by RNA	2.29E-03
33	GO:0006464: cellular protein modification process	2.49E-03
34	GO:0006974: cellular response to DNA damage stimulus	3.02E-03
35	GO:0008283: cell proliferation	4.68E-03
36	GO:0000154: rRNA modification	5.07E-03
37	GO:0009965: leaf morphogenesis	5.07E-03
38	GO:0006364: rRNA processing	5.75E-03
39	GO:0016569: covalent chromatin modification	7.04E-03
40	GO:0009553: embryo sac development	7.19E-03
41	GO:0006413: translational initiation	1.02E-02
42	GO:0009451: RNA modification	1.09E-02
43	GO:0045454: cell redox homeostasis	1.94E-02
44	GO:0006281: DNA repair	2.25E-02
45	GO:0006397: mRNA processing	2.32E-02
46	GO:0009734: auxin-activated signaling pathway	2.87E-02
47	GO:0009738: abscisic acid-activated signaling pathway	3.31E-02

Rank	GO Term	Adjusted P value
1	GO:0004835: tubulin-tyrosine ligase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0030515: snoRNA binding	2.68E-06
4	GO:0001054: RNA polymerase I activity	1.12E-05
5	GO:0070008: serine-type exopeptidase activity	1.77E-05
6	GO:0008026: ATP-dependent helicase activity	2.35E-05
7	GO:0043021: ribonucleoprotein complex binding	4.61E-05
8	GO:0052692: raffinose alpha-galactosidase activity	8.18E-05
9	GO:0004557: alpha-galactosidase activity	8.18E-05
10	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.61E-04
11	GO:0043022: ribosome binding	4.43E-04
12	GO:0000166: nucleotide binding	4.83E-04
13	GO:0004386: helicase activity	5.54E-04
14	GO:0001055: RNA polymerase II activity	6.32E-04
15	GO:0003723: RNA binding	7.12E-04
16	GO:0001056: RNA polymerase III activity	8.38E-04
17	GO:0005528: FK506 binding	1.21E-03
18	GO:0008536: Ran GTPase binding	1.90E-03
19	GO:0004519: endonuclease activity	2.54E-03
20	GO:0004721: phosphoprotein phosphatase activity	3.13E-03
21	GO:0004004: ATP-dependent RNA helicase activity	3.13E-03
22	GO:0008236: serine-type peptidase activity	3.24E-03
23	GO:0003746: translation elongation factor activity	3.94E-03
24	GO:0042393: histone binding	4.31E-03
25	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.21E-03
26	GO:0016874: ligase activity	7.04E-03
27	GO:0015035: protein disulfide oxidoreductase activity	7.49E-03
28	GO:0016746: transferase activity, transferring acyl groups	7.49E-03
29	GO:0004252: serine-type endopeptidase activity	9.23E-03
30	GO:0003743: translation initiation factor activity	1.20E-02
31	GO:0009055: electron carrier activity	2.36E-02
32	GO:0016740: transferase activity	3.90E-02
33	GO:0005524: ATP binding	4.27E-02
34	GO:0005525: GTP binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0005730: nucleolus	2.03E-06
3	GO:0005736: DNA-directed RNA polymerase I complex	6.05E-06
4	GO:0032040: small-subunit processome	1.33E-05
5	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	1.77E-05
6	GO:0070545: PeBoW complex	4.61E-05
7	GO:0033588: Elongator holoenzyme complex	1.23E-04
8	GO:0031428: box C/D snoRNP complex	2.72E-04
9	GO:0030687: preribosome, large subunit precursor	3.84E-04
10	GO:0005666: DNA-directed RNA polymerase III complex	6.32E-04
11	GO:0000418: DNA-directed RNA polymerase IV complex	6.99E-04
12	GO:0005665: DNA-directed RNA polymerase II, core complex	8.38E-04
13	GO:0043234: protein complex	1.13E-03
14	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.63E-03
15	GO:0005634: nucleus	3.73E-03
16	GO:0005829: cytosol	7.64E-03
17	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.56E-02
18	GO:0005743: mitochondrial inner membrane	2.14E-02
19	GO:0009506: plasmodesma	3.01E-02
20	GO:0005618: cell wall	3.31E-02