co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G57090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010360: negative regulation of anion channel activity	0.00E+00
2	GO:0006983: ER overload response	0.00E+00
3	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
4	GO:0000188: inactivation of MAPK activity	0.00E+00
5	GO:0009991: response to extracellular stimulus	0.00E+00
6	GO:0032780: negative regulation of ATPase activity	0.00E+00
7	GO:0010636: positive regulation of mitochondrial fusion	0.00E+00
8	GO:0010111: glyoxysome organization	0.00E+00
9	GO:0048312: intracellular distribution of mitochondria	0.00E+00
10	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
11	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
12	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
13	GO:0006914: autophagy	5.65E-06
14	GO:0006014: D-ribose metabolic process	4.48E-05
15	GO:0006635: fatty acid beta-oxidation	1.02E-04
16	GO:0030968: endoplasmic reticulum unfolded protein response	1.36E-04
17	GO:1902361: mitochondrial pyruvate transmembrane transport	1.52E-04
18	GO:0098721: uracil import across plasma membrane	1.52E-04
19	GO:0006144: purine nucleobase metabolic process	1.52E-04
20	GO:0098702: adenine import across plasma membrane	1.52E-04
21	GO:0035266: meristem growth	1.52E-04
22	GO:0098710: guanine import across plasma membrane	1.52E-04
23	GO:0048363: mucilage pectin metabolic process	1.52E-04
24	GO:0007292: female gamete generation	1.52E-04
25	GO:0019628: urate catabolic process	1.52E-04
26	GO:0006481: C-terminal protein methylation	1.52E-04
27	GO:0033306: phytol metabolic process	1.52E-04
28	GO:0035344: hypoxanthine transport	1.52E-04
29	GO:0043069: negative regulation of programmed cell death	2.36E-04
30	GO:0043066: negative regulation of apoptotic process	3.47E-04
31	GO:0006850: mitochondrial pyruvate transport	3.47E-04
32	GO:0015865: purine nucleotide transport	3.47E-04
33	GO:0051258: protein polymerization	3.47E-04
34	GO:0006501: C-terminal protein lipidation	3.47E-04
35	GO:0019441: tryptophan catabolic process to kynurenine	3.47E-04
36	GO:0019395: fatty acid oxidation	3.47E-04
37	GO:0050684: regulation of mRNA processing	3.47E-04
38	GO:0007584: response to nutrient	3.47E-04
39	GO:0009727: detection of ethylene stimulus	3.47E-04
40	GO:0051788: response to misfolded protein	3.47E-04
41	GO:0032784: regulation of DNA-templated transcription, elongation	5.68E-04
42	GO:0010359: regulation of anion channel activity	5.68E-04
43	GO:0061158: 3'-UTR-mediated mRNA destabilization	5.68E-04
44	GO:0060968: regulation of gene silencing	5.68E-04
45	GO:0006970: response to osmotic stress	7.27E-04
46	GO:0071369: cellular response to ethylene stimulus	8.07E-04
47	GO:0010116: positive regulation of abscisic acid biosynthetic process	8.13E-04
48	GO:0046902: regulation of mitochondrial membrane permeability	8.13E-04
49	GO:0072334: UDP-galactose transmembrane transport	8.13E-04
50	GO:0009399: nitrogen fixation	8.13E-04
51	GO:0080001: mucilage extrusion from seed coat	8.13E-04
52	GO:0042991: transcription factor import into nucleus	1.08E-03
53	GO:0044804: nucleophagy	1.08E-03
54	GO:0006542: glutamine biosynthetic process	1.08E-03
55	GO:0010222: stem vascular tissue pattern formation	1.08E-03
56	GO:0033320: UDP-D-xylose biosynthetic process	1.08E-03
57	GO:0010107: potassium ion import	1.08E-03
58	GO:0019252: starch biosynthetic process	1.25E-03
59	GO:0000422: mitophagy	1.36E-03
60	GO:0006090: pyruvate metabolic process	1.36E-03
61	GO:0007029: endoplasmic reticulum organization	1.36E-03
62	GO:0010225: response to UV-C	1.36E-03
63	GO:1902456: regulation of stomatal opening	1.67E-03
64	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.67E-03
65	GO:0048827: phyllome development	1.67E-03
66	GO:0048232: male gamete generation	1.67E-03
67	GO:0043248: proteasome assembly	1.67E-03
68	GO:0042732: D-xylose metabolic process	1.67E-03
69	GO:0000045: autophagosome assembly	1.67E-03
70	GO:0048280: vesicle fusion with Golgi apparatus	2.01E-03
71	GO:0019509: L-methionine salvage from methylthioadenosine	2.01E-03
72	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.03E-03
73	GO:0010150: leaf senescence	2.15E-03
74	GO:0006468: protein phosphorylation	2.18E-03
75	GO:0006333: chromatin assembly or disassembly	2.36E-03
76	GO:1902074: response to salt	2.36E-03
77	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.36E-03
78	GO:0010078: maintenance of root meristem identity	2.73E-03
79	GO:2000070: regulation of response to water deprivation	2.73E-03
80	GO:0006102: isocitrate metabolic process	2.73E-03
81	GO:0016559: peroxisome fission	2.73E-03
82	GO:0009819: drought recovery	2.73E-03
83	GO:0006499: N-terminal protein myristoylation	2.75E-03
84	GO:0009657: plastid organization	3.12E-03
85	GO:0009827: plant-type cell wall modification	3.12E-03
86	GO:0006099: tricarboxylic acid cycle	3.29E-03
87	GO:0009051: pentose-phosphate shunt, oxidative branch	3.53E-03
88	GO:0009821: alkaloid biosynthetic process	3.53E-03
89	GO:0019432: triglyceride biosynthetic process	3.53E-03
90	GO:0008202: steroid metabolic process	3.96E-03
91	GO:2000280: regulation of root development	3.96E-03
92	GO:0035556: intracellular signal transduction	4.18E-03
93	GO:0048829: root cap development	4.40E-03
94	GO:0006896: Golgi to vacuole transport	4.40E-03
95	GO:0015031: protein transport	4.47E-03
96	GO:0009723: response to ethylene	4.50E-03
97	GO:0072593: reactive oxygen species metabolic process	4.86E-03
98	GO:0030148: sphingolipid biosynthetic process	4.86E-03
99	GO:0010015: root morphogenesis	4.86E-03
100	GO:0000038: very long-chain fatty acid metabolic process	4.86E-03
101	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.90E-03
102	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.34E-03
103	GO:0000266: mitochondrial fission	5.34E-03
104	GO:0046777: protein autophosphorylation	5.35E-03
105	GO:0006108: malate metabolic process	5.83E-03
106	GO:0009933: meristem structural organization	6.33E-03
107	GO:0007034: vacuolar transport	6.33E-03
108	GO:0009887: animal organ morphogenesis	6.33E-03
109	GO:0009266: response to temperature stimulus	6.33E-03
110	GO:0048367: shoot system development	6.65E-03
111	GO:0071732: cellular response to nitric oxide	6.86E-03
112	GO:0090351: seedling development	6.86E-03
113	GO:0009225: nucleotide-sugar metabolic process	6.86E-03
114	GO:0007031: peroxisome organization	6.86E-03
115	GO:0010167: response to nitrate	6.86E-03
116	GO:0048364: root development	8.50E-03
117	GO:0009695: jasmonic acid biosynthetic process	8.51E-03
118	GO:0031408: oxylipin biosynthetic process	9.10E-03
119	GO:0051260: protein homooligomerization	9.10E-03
120	GO:0016226: iron-sulfur cluster assembly	9.69E-03
121	GO:0030433: ubiquitin-dependent ERAD pathway	9.69E-03
122	GO:0009873: ethylene-activated signaling pathway	1.12E-02
123	GO:0008284: positive regulation of cell proliferation	1.16E-02
124	GO:0016117: carotenoid biosynthetic process	1.16E-02
125	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.16E-02
126	GO:0042147: retrograde transport, endosome to Golgi	1.16E-02
127	GO:0010118: stomatal movement	1.22E-02
128	GO:0042631: cellular response to water deprivation	1.22E-02
129	GO:0006633: fatty acid biosynthetic process	1.22E-02
130	GO:0010154: fruit development	1.29E-02
131	GO:0071472: cellular response to salt stress	1.29E-02
132	GO:0048825: cotyledon development	1.42E-02
133	GO:0009749: response to glucose	1.42E-02
134	GO:0006623: protein targeting to vacuole	1.42E-02
135	GO:0006891: intra-Golgi vesicle-mediated transport	1.50E-02
136	GO:0071554: cell wall organization or biogenesis	1.50E-02
137	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.51E-02
138	GO:0009630: gravitropism	1.57E-02
139	GO:0007264: small GTPase mediated signal transduction	1.57E-02
140	GO:0009738: abscisic acid-activated signaling pathway	1.60E-02
141	GO:0008380: RNA splicing	1.61E-02
142	GO:0071281: cellular response to iron ion	1.64E-02
143	GO:0051607: defense response to virus	1.86E-02
144	GO:0001666: response to hypoxia	1.94E-02
145	GO:0009615: response to virus	1.94E-02
146	GO:0009816: defense response to bacterium, incompatible interaction	2.02E-02
147	GO:0042128: nitrate assimilation	2.10E-02
148	GO:0006888: ER to Golgi vesicle-mediated transport	2.18E-02
149	GO:0055085: transmembrane transport	2.26E-02
150	GO:0009817: defense response to fungus, incompatible interaction	2.34E-02
151	GO:0010311: lateral root formation	2.43E-02
152	GO:0048527: lateral root development	2.60E-02
153	GO:0010119: regulation of stomatal movement	2.60E-02
154	GO:0010200: response to chitin	2.68E-02
155	GO:0016192: vesicle-mediated transport	2.72E-02
156	GO:0045087: innate immune response	2.78E-02
157	GO:0016051: carbohydrate biosynthetic process	2.78E-02
158	GO:0009867: jasmonic acid mediated signaling pathway	2.78E-02
159	GO:0006839: mitochondrial transport	3.05E-02
160	GO:0055114: oxidation-reduction process	3.09E-02
161	GO:0006897: endocytosis	3.14E-02
162	GO:0006631: fatty acid metabolic process	3.14E-02
163	GO:0051707: response to other organism	3.32E-02
164	GO:0000209: protein polyubiquitination	3.42E-02
165	GO:0009737: response to abscisic acid	3.45E-02
166	GO:0009644: response to high light intensity	3.52E-02
167	GO:0009965: leaf morphogenesis	3.61E-02
168	GO:0009751: response to salicylic acid	3.76E-02
169	GO:0009414: response to water deprivation	3.91E-02
170	GO:0006397: mRNA processing	3.98E-02
171	GO:0009736: cytokinin-activated signaling pathway	4.11E-02
172	GO:0008152: metabolic process	4.20E-02
173	GO:0010224: response to UV-B	4.21E-02
174	GO:0016310: phosphorylation	4.23E-02
175	GO:0009620: response to fungus	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0004846: urate oxidase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
4	GO:0046522: S-methyl-5-thioribose kinase activity	0.00E+00
5	GO:0019776: Atg8 ligase activity	1.84E-05
6	GO:0004747: ribokinase activity	6.27E-05
7	GO:0008865: fructokinase activity	1.08E-04
8	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.52E-04
9	GO:0000386: second spliceosomal transesterification activity	1.52E-04
10	GO:0019786: Atg8-specific protease activity	1.52E-04
11	GO:0015207: adenine transmembrane transporter activity	1.52E-04
12	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	1.52E-04
13	GO:0015208: guanine transmembrane transporter activity	1.52E-04
14	GO:0015294: solute:cation symporter activity	1.52E-04
15	GO:0005524: ATP binding	2.56E-04
16	GO:0019779: Atg8 activating enzyme activity	3.47E-04
17	GO:0003988: acetyl-CoA C-acyltransferase activity	3.47E-04
18	GO:0045140: inositol phosphoceramide synthase activity	3.47E-04
19	GO:0004061: arylformamidase activity	3.47E-04
20	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.47E-04
21	GO:0016301: kinase activity	4.16E-04
22	GO:0050833: pyruvate transmembrane transporter activity	5.68E-04
23	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	5.68E-04
24	GO:0004674: protein serine/threonine kinase activity	6.80E-04
25	GO:0004108: citrate (Si)-synthase activity	8.13E-04
26	GO:0030527: structural constituent of chromatin	8.13E-04
27	GO:0004300: enoyl-CoA hydratase activity	8.13E-04
28	GO:0003727: single-stranded RNA binding	8.75E-04
29	GO:0004470: malic enzyme activity	1.08E-03
30	GO:0016004: phospholipase activator activity	1.08E-03
31	GO:0009916: alternative oxidase activity	1.08E-03
32	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.08E-03
33	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.08E-03
34	GO:0015210: uracil transmembrane transporter activity	1.08E-03
35	GO:0005496: steroid binding	1.36E-03
36	GO:0005471: ATP:ADP antiporter activity	1.36E-03
37	GO:0004356: glutamate-ammonia ligase activity	1.36E-03
38	GO:0005459: UDP-galactose transmembrane transporter activity	1.36E-03
39	GO:0008948: oxaloacetate decarboxylase activity	1.36E-03
40	GO:0036402: proteasome-activating ATPase activity	1.67E-03
41	GO:0048040: UDP-glucuronate decarboxylase activity	1.67E-03
42	GO:0004144: diacylglycerol O-acyltransferase activity	2.01E-03
43	GO:0070403: NAD+ binding	2.01E-03
44	GO:0102391: decanoate--CoA ligase activity	2.01E-03
45	GO:0004467: long-chain fatty acid-CoA ligase activity	2.36E-03
46	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.36E-03
47	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.36E-03
48	GO:0047893: flavonol 3-O-glucosyltransferase activity	2.73E-03
49	GO:0008142: oxysterol binding	3.12E-03
50	GO:0005267: potassium channel activity	3.12E-03
51	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.53E-03
52	GO:0071949: FAD binding	3.53E-03
53	GO:0016844: strictosidine synthase activity	3.96E-03
54	GO:0004713: protein tyrosine kinase activity	4.40E-03
55	GO:0008794: arsenate reductase (glutaredoxin) activity	4.86E-03
56	GO:0051287: NAD binding	4.90E-03
57	GO:0004521: endoribonuclease activity	5.34E-03
58	GO:0017025: TBP-class protein binding	6.86E-03
59	GO:0004725: protein tyrosine phosphatase activity	7.40E-03
60	GO:0051536: iron-sulfur cluster binding	7.95E-03
61	GO:0043130: ubiquitin binding	7.95E-03
62	GO:0043424: protein histidine kinase binding	8.51E-03
63	GO:0035251: UDP-glucosyltransferase activity	9.10E-03
64	GO:0003824: catalytic activity	1.29E-02
65	GO:0010181: FMN binding	1.36E-02
66	GO:0004872: receptor activity	1.42E-02
67	GO:0005515: protein binding	1.43E-02
68	GO:0016791: phosphatase activity	1.71E-02
69	GO:0008483: transaminase activity	1.79E-02
70	GO:0016597: amino acid binding	1.86E-02
71	GO:0016413: O-acetyltransferase activity	1.86E-02
72	GO:0051213: dioxygenase activity	1.94E-02
73	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.10E-02
74	GO:0004721: phosphoprotein phosphatase activity	2.18E-02
75	GO:0004683: calmodulin-dependent protein kinase activity	2.18E-02
76	GO:0008236: serine-type peptidase activity	2.26E-02
77	GO:0030145: manganese ion binding	2.60E-02
78	GO:0003746: translation elongation factor activity	2.78E-02
79	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.78E-02
80	GO:0000149: SNARE binding	2.95E-02
81	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.95E-02
82	GO:0051539: 4 iron, 4 sulfur cluster binding	3.05E-02
83	GO:0004364: glutathione transferase activity	3.23E-02
84	GO:0004871: signal transducer activity	3.24E-02
85	GO:0005484: SNAP receptor activity	3.32E-02
86	GO:0009055: electron carrier activity	4.09E-02
87	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.95E-02
88	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0046862: chromoplast membrane	0.00E+00
2	GO:0005829: cytosol	1.00E-04
3	GO:0005783: endoplasmic reticulum	1.84E-04
4	GO:0005777: peroxisome	2.30E-04
5	GO:0005886: plasma membrane	2.41E-04
6	GO:0034274: Atg12-Atg5-Atg16 complex	3.47E-04
7	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.68E-04
8	GO:0005775: vacuolar lumen	8.13E-04
9	GO:0005776: autophagosome	1.08E-03
10	GO:0030140: trans-Golgi network transport vesicle	1.67E-03
11	GO:0005778: peroxisomal membrane	1.71E-03
12	GO:0005789: endoplasmic reticulum membrane	1.72E-03
13	GO:0031597: cytosolic proteasome complex	2.01E-03
14	GO:0000815: ESCRT III complex	2.01E-03
15	GO:0030173: integral component of Golgi membrane	2.01E-03
16	GO:0031595: nuclear proteasome complex	2.36E-03
17	GO:0005773: vacuole	2.44E-03
18	GO:0031305: integral component of mitochondrial inner membrane	2.73E-03
19	GO:0012507: ER to Golgi transport vesicle membrane	2.73E-03
20	GO:0030131: clathrin adaptor complex	2.73E-03
21	GO:0000421: autophagosome membrane	2.73E-03
22	GO:0034045: pre-autophagosomal structure membrane	3.12E-03
23	GO:0009514: glyoxysome	3.12E-03
24	GO:0016604: nuclear body	3.96E-03
25	GO:0008540: proteasome regulatory particle, base subcomplex	3.96E-03
26	GO:0030125: clathrin vesicle coat	4.40E-03
27	GO:0016021: integral component of membrane	5.63E-03
28	GO:0030176: integral component of endoplasmic reticulum membrane	6.86E-03
29	GO:0005794: Golgi apparatus	7.72E-03
30	GO:0070469: respiratory chain	8.51E-03
31	GO:0005741: mitochondrial outer membrane	9.10E-03
32	GO:0005905: clathrin-coated pit	9.10E-03
33	GO:0031410: cytoplasmic vesicle	9.69E-03
34	GO:0005770: late endosome	1.29E-02
35	GO:0000785: chromatin	1.57E-02
36	GO:0016020: membrane	1.71E-02
37	GO:0000325: plant-type vacuole	2.60E-02
38	GO:0005802: trans-Golgi network	3.02E-02
39	GO:0031902: late endosome membrane	3.14E-02
40	GO:0031201: SNARE complex	3.14E-02
41	GO:0000502: proteasome complex	4.11E-02
42	GO:0043231: intracellular membrane-bounded organelle	4.20E-02
43	GO:0005635: nuclear envelope	4.31E-02
44	GO:0005681: spliceosomal complex	4.63E-02
45	GO:0005834: heterotrimeric G-protein complex	4.84E-02