co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G57040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0033231: carbohydrate export	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	5.66E-11
6	GO:0015979: photosynthesis	2.52E-06
7	GO:0016120: carotene biosynthetic process	8.02E-05
8	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.17E-04
9	GO:1901259: chloroplast rRNA processing	1.60E-04
10	GO:0010444: guard mother cell differentiation	2.10E-04
11	GO:0008610: lipid biosynthetic process	2.66E-04
12	GO:0009642: response to light intensity	2.66E-04
13	GO:0034337: RNA folding	2.75E-04
14	GO:0071588: hydrogen peroxide mediated signaling pathway	2.75E-04
15	GO:1902334: fructose export from vacuole to cytoplasm	2.75E-04
16	GO:0015755: fructose transport	2.75E-04
17	GO:0043953: protein transport by the Tat complex	2.75E-04
18	GO:0070509: calcium ion import	2.75E-04
19	GO:0007263: nitric oxide mediated signal transduction	2.75E-04
20	GO:0071277: cellular response to calcium ion	2.75E-04
21	GO:1904966: positive regulation of vitamin E biosynthetic process	2.75E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	2.75E-04
23	GO:0065002: intracellular protein transmembrane transport	2.75E-04
24	GO:0006106: fumarate metabolic process	2.75E-04
25	GO:0043686: co-translational protein modification	2.75E-04
26	GO:0055114: oxidation-reduction process	3.49E-04
27	GO:0010205: photoinhibition	4.67E-04
28	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.04E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.04E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.04E-04
31	GO:0080005: photosystem stoichiometry adjustment	6.04E-04
32	GO:0010115: regulation of abscisic acid biosynthetic process	6.04E-04
33	GO:1900871: chloroplast mRNA modification	6.04E-04
34	GO:0034755: iron ion transmembrane transport	6.04E-04
35	GO:0009750: response to fructose	6.30E-04
36	GO:0018298: protein-chromophore linkage	7.45E-04
37	GO:0010207: photosystem II assembly	9.17E-04
38	GO:0031022: nuclear migration along microfilament	9.79E-04
39	GO:0006000: fructose metabolic process	9.79E-04
40	GO:0006954: inflammatory response	9.79E-04
41	GO:0090391: granum assembly	9.79E-04
42	GO:0006518: peptide metabolic process	9.79E-04
43	GO:0006636: unsaturated fatty acid biosynthetic process	1.14E-03
44	GO:0010371: regulation of gibberellin biosynthetic process	1.40E-03
45	GO:0071484: cellular response to light intensity	1.40E-03
46	GO:0010239: chloroplast mRNA processing	1.40E-03
47	GO:0080170: hydrogen peroxide transmembrane transport	1.40E-03
48	GO:0009644: response to high light intensity	1.51E-03
49	GO:0031408: oxylipin biosynthetic process	1.52E-03
50	GO:0010109: regulation of photosynthesis	1.87E-03
51	GO:0009765: photosynthesis, light harvesting	1.87E-03
52	GO:0006109: regulation of carbohydrate metabolic process	1.87E-03
53	GO:0045727: positive regulation of translation	1.87E-03
54	GO:0015994: chlorophyll metabolic process	1.87E-03
55	GO:0010117: photoprotection	2.39E-03
56	GO:0006564: L-serine biosynthetic process	2.39E-03
57	GO:0009904: chloroplast accumulation movement	2.39E-03
58	GO:0031365: N-terminal protein amino acid modification	2.39E-03
59	GO:0010405: arabinogalactan protein metabolic process	2.95E-03
60	GO:0042549: photosystem II stabilization	2.95E-03
61	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.95E-03
62	GO:0016554: cytidine to uridine editing	2.95E-03
63	GO:0009913: epidermal cell differentiation	2.95E-03
64	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.95E-03
65	GO:0006561: proline biosynthetic process	2.95E-03
66	GO:0010019: chloroplast-nucleus signaling pathway	3.55E-03
67	GO:0009903: chloroplast avoidance movement	3.55E-03
68	GO:0009395: phospholipid catabolic process	4.19E-03
69	GO:0010196: nonphotochemical quenching	4.19E-03
70	GO:1900057: positive regulation of leaf senescence	4.19E-03
71	GO:0009645: response to low light intensity stimulus	4.19E-03
72	GO:0006400: tRNA modification	4.19E-03
73	GO:0015693: magnesium ion transport	4.19E-03
74	GO:0016126: sterol biosynthetic process	4.42E-03
75	GO:0010027: thylakoid membrane organization	4.42E-03
76	GO:0016559: peroxisome fission	4.86E-03
77	GO:0030091: protein repair	4.86E-03
78	GO:0006353: DNA-templated transcription, termination	4.86E-03
79	GO:0009704: de-etiolation	4.86E-03
80	GO:0042128: nitrate assimilation	4.93E-03
81	GO:0015995: chlorophyll biosynthetic process	5.20E-03
82	GO:0006002: fructose 6-phosphate metabolic process	5.57E-03
83	GO:0032544: plastid translation	5.57E-03
84	GO:0006633: fatty acid biosynthetic process	5.58E-03
85	GO:0055085: transmembrane transport	5.76E-03
86	GO:0007623: circadian rhythm	6.29E-03
87	GO:0090333: regulation of stomatal closure	6.31E-03
88	GO:0009631: cold acclimation	6.66E-03
89	GO:0008152: metabolic process	6.77E-03
90	GO:0009638: phototropism	7.09E-03
91	GO:1900865: chloroplast RNA modification	7.09E-03
92	GO:0009409: response to cold	7.27E-03
93	GO:0034599: cellular response to oxidative stress	7.63E-03
94	GO:0006995: cellular response to nitrogen starvation	7.90E-03
95	GO:0009688: abscisic acid biosynthetic process	7.90E-03
96	GO:0006810: transport	8.52E-03
97	GO:0000038: very long-chain fatty acid metabolic process	8.74E-03
98	GO:0008285: negative regulation of cell proliferation	8.74E-03
99	GO:0043085: positive regulation of catalytic activity	8.74E-03
100	GO:0006879: cellular iron ion homeostasis	8.74E-03
101	GO:0005975: carbohydrate metabolic process	9.09E-03
102	GO:0050826: response to freezing	1.05E-02
103	GO:0009718: anthocyanin-containing compound biosynthetic process	1.05E-02
104	GO:0006094: gluconeogenesis	1.05E-02
105	GO:0005986: sucrose biosynthetic process	1.05E-02
106	GO:0010628: positive regulation of gene expression	1.05E-02
107	GO:0006108: malate metabolic process	1.05E-02
108	GO:0010020: chloroplast fission	1.14E-02
109	GO:0019253: reductive pentose-phosphate cycle	1.14E-02
110	GO:0009735: response to cytokinin	1.22E-02
111	GO:0005985: sucrose metabolic process	1.24E-02
112	GO:0071732: cellular response to nitric oxide	1.24E-02
113	GO:0006364: rRNA processing	1.27E-02
114	GO:0009833: plant-type primary cell wall biogenesis	1.34E-02
115	GO:0006833: water transport	1.34E-02
116	GO:0010025: wax biosynthetic process	1.34E-02
117	GO:0006857: oligopeptide transport	1.36E-02
118	GO:0009416: response to light stimulus	1.39E-02
119	GO:0006096: glycolytic process	1.51E-02
120	GO:0010073: meristem maintenance	1.55E-02
121	GO:0008299: isoprenoid biosynthetic process	1.55E-02
122	GO:0009695: jasmonic acid biosynthetic process	1.55E-02
123	GO:0009768: photosynthesis, light harvesting in photosystem I	1.55E-02
124	GO:0051260: protein homooligomerization	1.65E-02
125	GO:0016226: iron-sulfur cluster assembly	1.76E-02
126	GO:0035428: hexose transmembrane transport	1.76E-02
127	GO:0010227: floral organ abscission	1.88E-02
128	GO:0071369: cellular response to ethylene stimulus	1.88E-02
129	GO:0006817: phosphate ion transport	1.99E-02
130	GO:0042127: regulation of cell proliferation	1.99E-02
131	GO:0006869: lipid transport	2.03E-02
132	GO:0016117: carotenoid biosynthetic process	2.11E-02
133	GO:0070417: cellular response to cold	2.11E-02
134	GO:0042335: cuticle development	2.23E-02
135	GO:0042391: regulation of membrane potential	2.23E-02
136	GO:0034220: ion transmembrane transport	2.23E-02
137	GO:0000413: protein peptidyl-prolyl isomerization	2.23E-02
138	GO:0046323: glucose import	2.35E-02
139	GO:0006662: glycerol ether metabolic process	2.35E-02
140	GO:0010182: sugar mediated signaling pathway	2.35E-02
141	GO:0009646: response to absence of light	2.47E-02
142	GO:0007018: microtubule-based movement	2.47E-02
143	GO:0071554: cell wall organization or biogenesis	2.73E-02
144	GO:0000302: response to reactive oxygen species	2.73E-02
145	GO:0016032: viral process	2.86E-02
146	GO:0071281: cellular response to iron ion	2.99E-02
147	GO:0009567: double fertilization forming a zygote and endosperm	3.13E-02
148	GO:0007166: cell surface receptor signaling pathway	3.59E-02
149	GO:0030244: cellulose biosynthetic process	4.29E-02
150	GO:0006811: ion transport	4.59E-02
151	GO:0009658: chloroplast organization	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0015284: fructose uniporter activity	0.00E+00
3	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
4	GO:0045436: lycopene beta cyclase activity	0.00E+00
5	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
6	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
7	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
10	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
11	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
12	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
13	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	5.05E-05
14	GO:0004506: squalene monooxygenase activity	5.05E-05
15	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.75E-04
16	GO:0004333: fumarate hydratase activity	2.75E-04
17	GO:0035671: enone reductase activity	2.75E-04
18	GO:0050139: nicotinate-N-glucosyltransferase activity	2.75E-04
19	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.75E-04
20	GO:0004856: xylulokinase activity	2.75E-04
21	GO:0042586: peptide deformylase activity	2.75E-04
22	GO:0045485: omega-6 fatty acid desaturase activity	2.75E-04
23	GO:0004321: fatty-acyl-CoA synthase activity	2.75E-04
24	GO:0004328: formamidase activity	2.75E-04
25	GO:0016168: chlorophyll binding	5.71E-04
26	GO:0047746: chlorophyllase activity	6.04E-04
27	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.04E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	6.04E-04
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.04E-04
30	GO:0008805: carbon-monoxide oxygenase activity	6.04E-04
31	GO:0005353: fructose transmembrane transporter activity	6.04E-04
32	GO:0016491: oxidoreductase activity	6.81E-04
33	GO:0004565: beta-galactosidase activity	8.15E-04
34	GO:0070402: NADPH binding	9.79E-04
35	GO:0005528: FK506 binding	1.26E-03
36	GO:0001872: (1->3)-beta-D-glucan binding	1.40E-03
37	GO:0016851: magnesium chelatase activity	1.40E-03
38	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.40E-03
39	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.40E-03
40	GO:0005215: transporter activity	1.50E-03
41	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.67E-03
42	GO:0042802: identical protein binding	1.72E-03
43	GO:0022891: substrate-specific transmembrane transporter activity	1.81E-03
44	GO:0004045: aminoacyl-tRNA hydrolase activity	1.87E-03
45	GO:0080032: methyl jasmonate esterase activity	1.87E-03
46	GO:0043495: protein anchor	1.87E-03
47	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.39E-03
48	GO:0016788: hydrolase activity, acting on ester bonds	2.39E-03
49	GO:0080030: methyl indole-3-acetate esterase activity	2.95E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.95E-03
51	GO:0004130: cytochrome-c peroxidase activity	2.95E-03
52	GO:0000293: ferric-chelate reductase activity	2.95E-03
53	GO:0035673: oligopeptide transmembrane transporter activity	2.95E-03
54	GO:0042578: phosphoric ester hydrolase activity	2.95E-03
55	GO:0016688: L-ascorbate peroxidase activity	2.95E-03
56	GO:0005242: inward rectifier potassium channel activity	3.55E-03
57	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.55E-03
58	GO:0005261: cation channel activity	3.55E-03
59	GO:0016597: amino acid binding	4.17E-03
60	GO:0019843: rRNA binding	4.17E-03
61	GO:0019899: enzyme binding	4.19E-03
62	GO:0004620: phospholipase activity	4.19E-03
63	GO:0043022: ribosome binding	4.86E-03
64	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.57E-03
65	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.31E-03
66	GO:0016207: 4-coumarate-CoA ligase activity	6.31E-03
67	GO:0016787: hydrolase activity	6.32E-03
68	GO:0005381: iron ion transmembrane transporter activity	7.09E-03
69	GO:0008047: enzyme activator activity	7.90E-03
70	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	8.53E-03
71	GO:0015198: oligopeptide transporter activity	9.61E-03
72	GO:0015095: magnesium ion transmembrane transporter activity	1.05E-02
73	GO:0005262: calcium channel activity	1.05E-02
74	GO:0009982: pseudouridine synthase activity	1.05E-02
75	GO:0008081: phosphoric diester hydrolase activity	1.05E-02
76	GO:0004022: alcohol dehydrogenase (NAD) activity	1.05E-02
77	GO:0005315: inorganic phosphate transmembrane transporter activity	1.05E-02
78	GO:0015293: symporter activity	1.06E-02
79	GO:0008266: poly(U) RNA binding	1.14E-02
80	GO:0030552: cAMP binding	1.24E-02
81	GO:0030553: cGMP binding	1.24E-02
82	GO:0051119: sugar transmembrane transporter activity	1.24E-02
83	GO:0031409: pigment binding	1.34E-02
84	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.34E-02
85	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.34E-02
86	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.34E-02
87	GO:0051536: iron-sulfur cluster binding	1.44E-02
88	GO:0004857: enzyme inhibitor activity	1.44E-02
89	GO:0043424: protein histidine kinase binding	1.55E-02
90	GO:0005216: ion channel activity	1.55E-02
91	GO:0004176: ATP-dependent peptidase activity	1.65E-02
92	GO:0016760: cellulose synthase (UDP-forming) activity	1.88E-02
93	GO:0047134: protein-disulfide reductase activity	2.11E-02
94	GO:0030246: carbohydrate binding	2.17E-02
95	GO:0030551: cyclic nucleotide binding	2.23E-02
96	GO:0004791: thioredoxin-disulfide reductase activity	2.47E-02
97	GO:0016853: isomerase activity	2.47E-02
98	GO:0005355: glucose transmembrane transporter activity	2.47E-02
99	GO:0050662: coenzyme binding	2.47E-02
100	GO:0004518: nuclease activity	2.86E-02
101	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.93E-02
102	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.99E-02
103	GO:0016759: cellulose synthase activity	3.13E-02
104	GO:0008483: transaminase activity	3.27E-02
105	GO:0008017: microtubule binding	3.29E-02
106	GO:0016413: O-acetyltransferase activity	3.41E-02
107	GO:0015250: water channel activity	3.55E-02
108	GO:0008289: lipid binding	3.56E-02
109	GO:0030247: polysaccharide binding	3.99E-02
110	GO:0015238: drug transmembrane transporter activity	4.44E-02
111	GO:0004222: metalloendopeptidase activity	4.59E-02
112	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.59E-02
113	GO:0008168: methyltransferase activity	4.66E-02
114	GO:0030145: manganese ion binding	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	7.19E-36
4	GO:0009535: chloroplast thylakoid membrane	6.99E-16
5	GO:0009534: chloroplast thylakoid	4.94E-13
6	GO:0009570: chloroplast stroma	5.70E-13
7	GO:0009941: chloroplast envelope	1.28E-12
8	GO:0009579: thylakoid	1.50E-08
9	GO:0009543: chloroplast thylakoid lumen	1.01E-05
10	GO:0031977: thylakoid lumen	1.58E-04
11	GO:0045239: tricarboxylic acid cycle enzyme complex	2.75E-04
12	GO:0031361: integral component of thylakoid membrane	2.75E-04
13	GO:0009782: photosystem I antenna complex	2.75E-04
14	GO:0009515: granal stacked thylakoid	2.75E-04
15	GO:0016021: integral component of membrane	3.43E-04
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.94E-04
17	GO:0010287: plastoglobule	6.80E-04
18	GO:0031969: chloroplast membrane	7.00E-04
19	GO:0010007: magnesium chelatase complex	9.79E-04
20	GO:0033281: TAT protein transport complex	9.79E-04
21	GO:0009523: photosystem II	2.86E-03
22	GO:0009706: chloroplast inner membrane	3.13E-03
23	GO:0010319: stromule	3.93E-03
24	GO:0009533: chloroplast stromal thylakoid	4.19E-03
25	GO:0005623: cell	4.32E-03
26	GO:0008180: COP9 signalosome	6.31E-03
27	GO:0032040: small-subunit processome	9.61E-03
28	GO:0030076: light-harvesting complex	1.24E-02
29	GO:0005886: plasma membrane	1.48E-02
30	GO:0009654: photosystem II oxygen evolving complex	1.55E-02
31	GO:0042651: thylakoid membrane	1.55E-02
32	GO:0048046: apoplast	1.94E-02
33	GO:0005871: kinesin complex	2.11E-02
34	GO:0019898: extrinsic component of membrane	2.60E-02
35	GO:0005887: integral component of plasma membrane	3.45E-02
36	GO:0030529: intracellular ribonucleoprotein complex	3.55E-02
37	GO:0046658: anchored component of plasma membrane	4.15E-02
38	GO:0016020: membrane	4.16E-02
39	GO:0019005: SCF ubiquitin ligase complex	4.29E-02
40	GO:0009707: chloroplast outer membrane	4.29E-02