GO Enrichment Analysis of Co-expressed Genes with
AT3G56650
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
4 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
5 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
6 | GO:0033494: ferulate metabolic process | 0.00E+00 |
7 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
8 | GO:0006223: uracil salvage | 0.00E+00 |
9 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
10 | GO:0042493: response to drug | 0.00E+00 |
11 | GO:0006399: tRNA metabolic process | 0.00E+00 |
12 | GO:0034337: RNA folding | 0.00E+00 |
13 | GO:0006412: translation | 3.11E-15 |
14 | GO:0015979: photosynthesis | 4.60E-14 |
15 | GO:0032544: plastid translation | 4.89E-14 |
16 | GO:0015995: chlorophyll biosynthetic process | 5.41E-12 |
17 | GO:0009735: response to cytokinin | 9.65E-12 |
18 | GO:0010027: thylakoid membrane organization | 4.80E-09 |
19 | GO:0042254: ribosome biogenesis | 1.27E-08 |
20 | GO:0090391: granum assembly | 4.22E-08 |
21 | GO:0010207: photosystem II assembly | 2.76E-06 |
22 | GO:0010196: nonphotochemical quenching | 7.14E-06 |
23 | GO:0010206: photosystem II repair | 2.13E-05 |
24 | GO:0009658: chloroplast organization | 2.24E-05 |
25 | GO:0009773: photosynthetic electron transport in photosystem I | 4.72E-05 |
26 | GO:0009772: photosynthetic electron transport in photosystem II | 2.89E-04 |
27 | GO:0071588: hydrogen peroxide mediated signaling pathway | 3.40E-04 |
28 | GO:0043489: RNA stabilization | 3.40E-04 |
29 | GO:1904966: positive regulation of vitamin E biosynthetic process | 3.40E-04 |
30 | GO:0000481: maturation of 5S rRNA | 3.40E-04 |
31 | GO:1904964: positive regulation of phytol biosynthetic process | 3.40E-04 |
32 | GO:0042371: vitamin K biosynthetic process | 3.40E-04 |
33 | GO:0008610: lipid biosynthetic process | 3.64E-04 |
34 | GO:0009657: plastid organization | 4.45E-04 |
35 | GO:0006779: porphyrin-containing compound biosynthetic process | 6.32E-04 |
36 | GO:0006782: protoporphyrinogen IX biosynthetic process | 7.37E-04 |
37 | GO:0010024: phytochromobilin biosynthetic process | 7.40E-04 |
38 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 7.40E-04 |
39 | GO:0006729: tetrahydrobiopterin biosynthetic process | 7.40E-04 |
40 | GO:0006568: tryptophan metabolic process | 7.40E-04 |
41 | GO:0043085: positive regulation of catalytic activity | 8.49E-04 |
42 | GO:0016024: CDP-diacylglycerol biosynthetic process | 9.69E-04 |
43 | GO:0006006: glucose metabolic process | 1.10E-03 |
44 | GO:0010581: regulation of starch biosynthetic process | 1.20E-03 |
45 | GO:0006788: heme oxidation | 1.20E-03 |
46 | GO:0006518: peptide metabolic process | 1.20E-03 |
47 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 1.20E-03 |
48 | GO:0080055: low-affinity nitrate transport | 1.20E-03 |
49 | GO:0051604: protein maturation | 1.20E-03 |
50 | GO:0010143: cutin biosynthetic process | 1.23E-03 |
51 | GO:0071484: cellular response to light intensity | 1.72E-03 |
52 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.72E-03 |
53 | GO:0051639: actin filament network formation | 1.72E-03 |
54 | GO:0006241: CTP biosynthetic process | 1.72E-03 |
55 | GO:0080170: hydrogen peroxide transmembrane transport | 1.72E-03 |
56 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.72E-03 |
57 | GO:0009650: UV protection | 1.72E-03 |
58 | GO:0006165: nucleoside diphosphate phosphorylation | 1.72E-03 |
59 | GO:0006228: UTP biosynthetic process | 1.72E-03 |
60 | GO:0006424: glutamyl-tRNA aminoacylation | 1.72E-03 |
61 | GO:1901332: negative regulation of lateral root development | 1.72E-03 |
62 | GO:0006986: response to unfolded protein | 1.72E-03 |
63 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.72E-03 |
64 | GO:2001141: regulation of RNA biosynthetic process | 1.72E-03 |
65 | GO:0051513: regulation of monopolar cell growth | 1.72E-03 |
66 | GO:0009793: embryo development ending in seed dormancy | 2.03E-03 |
67 | GO:0051764: actin crosslink formation | 2.31E-03 |
68 | GO:0006183: GTP biosynthetic process | 2.31E-03 |
69 | GO:0045727: positive regulation of translation | 2.31E-03 |
70 | GO:0030104: water homeostasis | 2.31E-03 |
71 | GO:0044206: UMP salvage | 2.31E-03 |
72 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 2.31E-03 |
73 | GO:0009411: response to UV | 2.46E-03 |
74 | GO:0000304: response to singlet oxygen | 2.96E-03 |
75 | GO:0043097: pyrimidine nucleoside salvage | 2.96E-03 |
76 | GO:0032543: mitochondrial translation | 2.96E-03 |
77 | GO:0010236: plastoquinone biosynthetic process | 2.96E-03 |
78 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.96E-03 |
79 | GO:0006461: protein complex assembly | 2.96E-03 |
80 | GO:0042335: cuticle development | 3.13E-03 |
81 | GO:0000413: protein peptidyl-prolyl isomerization | 3.13E-03 |
82 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 3.65E-03 |
83 | GO:0000470: maturation of LSU-rRNA | 3.65E-03 |
84 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.65E-03 |
85 | GO:0006206: pyrimidine nucleobase metabolic process | 3.65E-03 |
86 | GO:0042549: photosystem II stabilization | 3.65E-03 |
87 | GO:0042372: phylloquinone biosynthetic process | 4.40E-03 |
88 | GO:1901259: chloroplast rRNA processing | 4.40E-03 |
89 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.40E-03 |
90 | GO:0017148: negative regulation of translation | 4.40E-03 |
91 | GO:0009854: oxidative photosynthetic carbon pathway | 4.40E-03 |
92 | GO:0010019: chloroplast-nucleus signaling pathway | 4.40E-03 |
93 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 5.19E-03 |
94 | GO:1900057: positive regulation of leaf senescence | 5.19E-03 |
95 | GO:0006400: tRNA modification | 5.19E-03 |
96 | GO:0048564: photosystem I assembly | 6.03E-03 |
97 | GO:0030091: protein repair | 6.03E-03 |
98 | GO:0006605: protein targeting | 6.03E-03 |
99 | GO:0032508: DNA duplex unwinding | 6.03E-03 |
100 | GO:0010492: maintenance of shoot apical meristem identity | 6.03E-03 |
101 | GO:0045454: cell redox homeostasis | 6.84E-03 |
102 | GO:0071482: cellular response to light stimulus | 6.92E-03 |
103 | GO:0019430: removal of superoxide radicals | 6.92E-03 |
104 | GO:0009051: pentose-phosphate shunt, oxidative branch | 7.85E-03 |
105 | GO:0048507: meristem development | 7.85E-03 |
106 | GO:0018298: protein-chromophore linkage | 7.88E-03 |
107 | GO:0010380: regulation of chlorophyll biosynthetic process | 8.82E-03 |
108 | GO:0009631: cold acclimation | 9.11E-03 |
109 | GO:0045490: pectin catabolic process | 9.37E-03 |
110 | GO:0009451: RNA modification | 9.65E-03 |
111 | GO:0006535: cysteine biosynthetic process from serine | 9.84E-03 |
112 | GO:0048829: root cap development | 9.84E-03 |
113 | GO:0045036: protein targeting to chloroplast | 9.84E-03 |
114 | GO:0009637: response to blue light | 1.00E-02 |
115 | GO:0006457: protein folding | 1.03E-02 |
116 | GO:0034599: cellular response to oxidative stress | 1.05E-02 |
117 | GO:0009073: aromatic amino acid family biosynthetic process | 1.09E-02 |
118 | GO:0006415: translational termination | 1.09E-02 |
119 | GO:0006352: DNA-templated transcription, initiation | 1.09E-02 |
120 | GO:0008152: metabolic process | 1.09E-02 |
121 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.09E-02 |
122 | GO:0010114: response to red light | 1.29E-02 |
123 | GO:0009409: response to cold | 1.34E-02 |
124 | GO:0019253: reductive pentose-phosphate cycle | 1.43E-02 |
125 | GO:0009734: auxin-activated signaling pathway | 1.58E-02 |
126 | GO:0019344: cysteine biosynthetic process | 1.80E-02 |
127 | GO:0009116: nucleoside metabolic process | 1.80E-02 |
128 | GO:0000027: ribosomal large subunit assembly | 1.80E-02 |
129 | GO:0051017: actin filament bundle assembly | 1.80E-02 |
130 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.93E-02 |
131 | GO:0031408: oxylipin biosynthetic process | 2.07E-02 |
132 | GO:0016114: terpenoid biosynthetic process | 2.07E-02 |
133 | GO:0003333: amino acid transmembrane transport | 2.07E-02 |
134 | GO:0035428: hexose transmembrane transport | 2.21E-02 |
135 | GO:0042742: defense response to bacterium | 2.22E-02 |
136 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.35E-02 |
137 | GO:0009561: megagametogenesis | 2.49E-02 |
138 | GO:0009306: protein secretion | 2.49E-02 |
139 | GO:0080022: primary root development | 2.79E-02 |
140 | GO:0034220: ion transmembrane transport | 2.79E-02 |
141 | GO:0006662: glycerol ether metabolic process | 2.94E-02 |
142 | GO:0046323: glucose import | 2.94E-02 |
143 | GO:0015986: ATP synthesis coupled proton transport | 3.10E-02 |
144 | GO:0000302: response to reactive oxygen species | 3.42E-02 |
145 | GO:0042744: hydrogen peroxide catabolic process | 3.55E-02 |
146 | GO:0032502: developmental process | 3.58E-02 |
147 | GO:0009790: embryo development | 3.63E-02 |
148 | GO:0030163: protein catabolic process | 3.75E-02 |
149 | GO:0009567: double fertilization forming a zygote and endosperm | 3.92E-02 |
150 | GO:0009828: plant-type cell wall loosening | 3.92E-02 |
151 | GO:0016126: sterol biosynthetic process | 4.44E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0005048: signal sequence binding | 0.00E+00 |
2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
4 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
5 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
6 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
7 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
8 | GO:0008887: glycerate kinase activity | 0.00E+00 |
9 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
10 | GO:0019843: rRNA binding | 2.71E-24 |
11 | GO:0003735: structural constituent of ribosome | 4.42E-17 |
12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.46E-07 |
13 | GO:0016851: magnesium chelatase activity | 2.04E-07 |
14 | GO:0005528: FK506 binding | 5.86E-06 |
15 | GO:0043023: ribosomal large subunit binding | 4.07E-05 |
16 | GO:0008266: poly(U) RNA binding | 8.72E-05 |
17 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 3.40E-04 |
18 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 3.40E-04 |
19 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 3.40E-04 |
20 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 3.40E-04 |
21 | GO:0004163: diphosphomevalonate decarboxylase activity | 3.40E-04 |
22 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 3.40E-04 |
23 | GO:0008047: enzyme activator activity | 7.37E-04 |
24 | GO:0000774: adenyl-nucleotide exchange factor activity | 7.40E-04 |
25 | GO:0016630: protochlorophyllide reductase activity | 7.40E-04 |
26 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 7.40E-04 |
27 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 7.40E-04 |
28 | GO:0051082: unfolded protein binding | 8.42E-04 |
29 | GO:0016168: chlorophyll binding | 8.43E-04 |
30 | GO:0031072: heat shock protein binding | 1.10E-03 |
31 | GO:0050734: hydroxycinnamoyltransferase activity | 1.20E-03 |
32 | GO:0004751: ribose-5-phosphate isomerase activity | 1.20E-03 |
33 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 1.20E-03 |
34 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 1.20E-03 |
35 | GO:0016787: hydrolase activity | 1.66E-03 |
36 | GO:0016149: translation release factor activity, codon specific | 1.72E-03 |
37 | GO:0004550: nucleoside diphosphate kinase activity | 1.72E-03 |
38 | GO:0008097: 5S rRNA binding | 1.72E-03 |
39 | GO:0051087: chaperone binding | 1.88E-03 |
40 | GO:0004845: uracil phosphoribosyltransferase activity | 2.31E-03 |
41 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.31E-03 |
42 | GO:0016836: hydro-lyase activity | 2.31E-03 |
43 | GO:0004045: aminoacyl-tRNA hydrolase activity | 2.31E-03 |
44 | GO:0016987: sigma factor activity | 2.31E-03 |
45 | GO:0010328: auxin influx transmembrane transporter activity | 2.31E-03 |
46 | GO:0043495: protein anchor | 2.31E-03 |
47 | GO:0004392: heme oxygenase (decyclizing) activity | 2.31E-03 |
48 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 2.31E-03 |
49 | GO:0004659: prenyltransferase activity | 2.31E-03 |
50 | GO:0001053: plastid sigma factor activity | 2.31E-03 |
51 | GO:0030570: pectate lyase activity | 2.46E-03 |
52 | GO:0042802: identical protein binding | 2.77E-03 |
53 | GO:0003959: NADPH dehydrogenase activity | 2.96E-03 |
54 | GO:0004791: thioredoxin-disulfide reductase activity | 3.63E-03 |
55 | GO:0004130: cytochrome-c peroxidase activity | 3.65E-03 |
56 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.65E-03 |
57 | GO:0016688: L-ascorbate peroxidase activity | 3.65E-03 |
58 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 3.65E-03 |
59 | GO:0003723: RNA binding | 3.99E-03 |
60 | GO:0004124: cysteine synthase activity | 4.40E-03 |
61 | GO:0051920: peroxiredoxin activity | 4.40E-03 |
62 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 4.40E-03 |
63 | GO:0004849: uridine kinase activity | 4.40E-03 |
64 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.74E-03 |
65 | GO:0005525: GTP binding | 4.96E-03 |
66 | GO:0019899: enzyme binding | 5.19E-03 |
67 | GO:0004620: phospholipase activity | 5.19E-03 |
68 | GO:0003729: mRNA binding | 5.69E-03 |
69 | GO:0016209: antioxidant activity | 6.03E-03 |
70 | GO:0008312: 7S RNA binding | 6.03E-03 |
71 | GO:0052747: sinapyl alcohol dehydrogenase activity | 6.03E-03 |
72 | GO:0004033: aldo-keto reductase (NADP) activity | 6.03E-03 |
73 | GO:0008236: serine-type peptidase activity | 7.48E-03 |
74 | GO:0003747: translation release factor activity | 7.85E-03 |
75 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 7.88E-03 |
76 | GO:0050661: NADP binding | 1.14E-02 |
77 | GO:0008378: galactosyltransferase activity | 1.20E-02 |
78 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 1.20E-02 |
79 | GO:0009982: pseudouridine synthase activity | 1.31E-02 |
80 | GO:0004565: beta-galactosidase activity | 1.31E-02 |
81 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.31E-02 |
82 | GO:0016788: hydrolase activity, acting on ester bonds | 1.67E-02 |
83 | GO:0031409: pigment binding | 1.67E-02 |
84 | GO:0005509: calcium ion binding | 1.94E-02 |
85 | GO:0022891: substrate-specific transmembrane transporter activity | 2.35E-02 |
86 | GO:0003756: protein disulfide isomerase activity | 2.49E-02 |
87 | GO:0016746: transferase activity, transferring acyl groups | 2.56E-02 |
88 | GO:0047134: protein-disulfide reductase activity | 2.64E-02 |
89 | GO:0042803: protein homodimerization activity | 2.85E-02 |
90 | GO:0008080: N-acetyltransferase activity | 2.94E-02 |
91 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.94E-02 |
92 | GO:0016740: transferase activity | 2.99E-02 |
93 | GO:0005355: glucose transmembrane transporter activity | 3.10E-02 |
94 | GO:0050662: coenzyme binding | 3.10E-02 |
95 | GO:0016829: lyase activity | 3.37E-02 |
96 | GO:0030170: pyridoxal phosphate binding | 3.46E-02 |
97 | GO:0051015: actin filament binding | 3.75E-02 |
98 | GO:0016791: phosphatase activity | 3.92E-02 |
99 | GO:0008483: transaminase activity | 4.09E-02 |
100 | GO:0015250: water channel activity | 4.44E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
2 | GO:0044391: ribosomal subunit | 0.00E+00 |
3 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
4 | GO:0009507: chloroplast | 1.23E-84 |
5 | GO:0009570: chloroplast stroma | 1.75E-69 |
6 | GO:0009941: chloroplast envelope | 2.17E-55 |
7 | GO:0009535: chloroplast thylakoid membrane | 2.22E-38 |
8 | GO:0009579: thylakoid | 3.25E-36 |
9 | GO:0009534: chloroplast thylakoid | 1.26E-34 |
10 | GO:0009543: chloroplast thylakoid lumen | 1.34E-22 |
11 | GO:0031977: thylakoid lumen | 2.88E-19 |
12 | GO:0005840: ribosome | 4.54E-19 |
13 | GO:0030095: chloroplast photosystem II | 6.65E-10 |
14 | GO:0010007: magnesium chelatase complex | 4.22E-08 |
15 | GO:0009654: photosystem II oxygen evolving complex | 1.77E-07 |
16 | GO:0019898: extrinsic component of membrane | 1.41E-06 |
17 | GO:0016020: membrane | 1.21E-05 |
18 | GO:0031969: chloroplast membrane | 4.26E-05 |
19 | GO:0009533: chloroplast stromal thylakoid | 2.89E-04 |
20 | GO:0043674: columella | 3.40E-04 |
21 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 3.40E-04 |
22 | GO:0009547: plastid ribosome | 3.40E-04 |
23 | GO:0009523: photosystem II | 4.50E-04 |
24 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.35E-04 |
25 | GO:0080085: signal recognition particle, chloroplast targeting | 7.40E-04 |
26 | GO:0032040: small-subunit processome | 9.69E-04 |
27 | GO:0000311: plastid large ribosomal subunit | 9.69E-04 |
28 | GO:0010287: plastoglobule | 1.09E-03 |
29 | GO:0009509: chromoplast | 1.20E-03 |
30 | GO:0000312: plastid small ribosomal subunit | 1.23E-03 |
31 | GO:0032432: actin filament bundle | 1.72E-03 |
32 | GO:0042651: thylakoid membrane | 1.88E-03 |
33 | GO:0015935: small ribosomal subunit | 2.06E-03 |
34 | GO:0009526: plastid envelope | 2.31E-03 |
35 | GO:0055035: plastid thylakoid membrane | 2.96E-03 |
36 | GO:0009522: photosystem I | 3.63E-03 |
37 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 3.65E-03 |
38 | GO:0009536: plastid | 3.75E-03 |
39 | GO:0042807: central vacuole | 5.19E-03 |
40 | GO:0010319: stromule | 5.37E-03 |
41 | GO:0022625: cytosolic large ribosomal subunit | 5.62E-03 |
42 | GO:0030529: intracellular ribonucleoprotein complex | 6.03E-03 |
43 | GO:0048046: apoplast | 6.43E-03 |
44 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 6.92E-03 |
45 | GO:0008180: COP9 signalosome | 7.85E-03 |
46 | GO:0042644: chloroplast nucleoid | 7.85E-03 |
47 | GO:0015934: large ribosomal subunit | 9.11E-03 |
48 | GO:0005884: actin filament | 1.09E-02 |
49 | GO:0009508: plastid chromosome | 1.31E-02 |
50 | GO:0030076: light-harvesting complex | 1.55E-02 |
51 | GO:0043234: protein complex | 1.67E-02 |
52 | GO:0009706: chloroplast inner membrane | 2.49E-02 |
53 | GO:0005759: mitochondrial matrix | 3.91E-02 |
54 | GO:0009295: nucleoid | 4.09E-02 |