Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56370

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
2GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0080094: response to trehalose-6-phosphate0.00E+00
6GO:0010394: homogalacturonan metabolic process0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0042026: protein refolding2.65E-06
9GO:0007155: cell adhesion6.48E-06
10GO:0006633: fatty acid biosynthetic process1.99E-05
11GO:0006546: glycine catabolic process5.13E-05
12GO:0071555: cell wall organization8.40E-05
13GO:0007005: mitochondrion organization1.42E-04
14GO:0006458: 'de novo' protein folding1.62E-04
15GO:0016117: carotenoid biosynthetic process2.04E-04
16GO:0045489: pectin biosynthetic process2.51E-04
17GO:0010480: microsporocyte differentiation2.77E-04
18GO:0042547: cell wall modification involved in multidimensional cell growth2.77E-04
19GO:0045488: pectin metabolic process2.77E-04
20GO:0019510: S-adenosylhomocysteine catabolic process2.77E-04
21GO:0006169: adenosine salvage2.77E-04
22GO:0010442: guard cell morphogenesis2.77E-04
23GO:0010583: response to cyclopentenone3.65E-04
24GO:0010192: mucilage biosynthetic process5.52E-04
25GO:0080183: response to photooxidative stress6.09E-04
26GO:0030388: fructose 1,6-bisphosphate metabolic process6.09E-04
27GO:0043039: tRNA aminoacylation6.09E-04
28GO:0052541: plant-type cell wall cellulose metabolic process6.09E-04
29GO:1903338: regulation of cell wall organization or biogenesis6.09E-04
30GO:0006695: cholesterol biosynthetic process6.09E-04
31GO:0033353: S-adenosylmethionine cycle6.09E-04
32GO:0010086: embryonic root morphogenesis6.09E-04
33GO:0019253: reductive pentose-phosphate cycle9.28E-04
34GO:0010253: UDP-rhamnose biosynthetic process9.88E-04
35GO:0006696: ergosterol biosynthetic process9.88E-04
36GO:2001295: malonyl-CoA biosynthetic process9.88E-04
37GO:0006065: UDP-glucuronate biosynthetic process9.88E-04
38GO:0090506: axillary shoot meristem initiation9.88E-04
39GO:0006000: fructose metabolic process9.88E-04
40GO:0006518: peptide metabolic process9.88E-04
41GO:0016051: carbohydrate biosynthetic process1.02E-03
42GO:0010167: response to nitrate1.04E-03
43GO:0046686: response to cadmium ion1.05E-03
44GO:0045490: pectin catabolic process1.22E-03
45GO:0009116: nucleoside metabolic process1.27E-03
46GO:0006418: tRNA aminoacylation for protein translation1.40E-03
47GO:0010088: phloem development1.41E-03
48GO:0016556: mRNA modification1.41E-03
49GO:0007231: osmosensory signaling pathway1.41E-03
50GO:0051085: chaperone mediated protein folding requiring cofactor1.41E-03
51GO:0009052: pentose-phosphate shunt, non-oxidative branch1.41E-03
52GO:0071329: cellular response to sucrose stimulus1.41E-03
53GO:0061077: chaperone-mediated protein folding1.54E-03
54GO:0008152: metabolic process1.68E-03
55GO:0006730: one-carbon metabolic process1.68E-03
56GO:0044206: UMP salvage1.89E-03
57GO:0009956: radial pattern formation1.89E-03
58GO:0006542: glutamine biosynthetic process1.89E-03
59GO:0019676: ammonia assimilation cycle1.89E-03
60GO:0019464: glycine decarboxylation via glycine cleavage system1.89E-03
61GO:0009765: photosynthesis, light harvesting1.89E-03
62GO:0033500: carbohydrate homeostasis1.89E-03
63GO:0031122: cytoplasmic microtubule organization1.89E-03
64GO:0000271: polysaccharide biosynthetic process2.33E-03
65GO:0042335: cuticle development2.33E-03
66GO:0016120: carotene biosynthetic process2.41E-03
67GO:0043097: pyrimidine nucleoside salvage2.41E-03
68GO:0016123: xanthophyll biosynthetic process2.41E-03
69GO:0044209: AMP salvage2.41E-03
70GO:0010305: leaf vascular tissue pattern formation2.51E-03
71GO:0006096: glycolytic process2.52E-03
72GO:0006206: pyrimidine nucleobase metabolic process2.98E-03
73GO:0009635: response to herbicide2.98E-03
74GO:0006555: methionine metabolic process2.98E-03
75GO:0070814: hydrogen sulfide biosynthetic process2.98E-03
76GO:0048831: regulation of shoot system development2.98E-03
77GO:0016554: cytidine to uridine editing2.98E-03
78GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.98E-03
79GO:0009735: response to cytokinin3.31E-03
80GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.47E-03
81GO:0048509: regulation of meristem development3.58E-03
82GO:1901259: chloroplast rRNA processing3.58E-03
83GO:0010555: response to mannitol3.58E-03
84GO:0009955: adaxial/abaxial pattern specification3.58E-03
85GO:0010067: procambium histogenesis3.58E-03
86GO:0006694: steroid biosynthetic process3.58E-03
87GO:0008272: sulfate transport4.23E-03
88GO:0006955: immune response4.23E-03
89GO:0048437: floral organ development4.23E-03
90GO:0006875: cellular metal ion homeostasis4.90E-03
91GO:0052543: callose deposition in cell wall4.90E-03
92GO:0048564: photosystem I assembly4.90E-03
93GO:0009642: response to light intensity4.90E-03
94GO:0042128: nitrate assimilation4.99E-03
95GO:0010233: phloem transport5.62E-03
96GO:0006526: arginine biosynthetic process5.62E-03
97GO:0032544: plastid translation5.62E-03
98GO:0009808: lignin metabolic process5.62E-03
99GO:0006002: fructose 6-phosphate metabolic process5.62E-03
100GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.62E-03
101GO:0006754: ATP biosynthetic process6.37E-03
102GO:0048589: developmental growth6.37E-03
103GO:0000902: cell morphogenesis6.37E-03
104GO:0045337: farnesyl diphosphate biosynthetic process6.37E-03
105GO:0033384: geranyl diphosphate biosynthetic process6.37E-03
106GO:0009407: toxin catabolic process6.43E-03
107GO:0055114: oxidation-reduction process6.65E-03
108GO:0007568: aging6.75E-03
109GO:0035999: tetrahydrofolate interconversion7.15E-03
110GO:1900865: chloroplast RNA modification7.15E-03
111GO:0019538: protein metabolic process7.97E-03
112GO:0009970: cellular response to sulfate starvation7.97E-03
113GO:0000103: sulfate assimilation7.97E-03
114GO:0006631: fatty acid metabolic process8.79E-03
115GO:0018119: peptidyl-cysteine S-nitrosylation8.82E-03
116GO:0048229: gametophyte development8.82E-03
117GO:0010015: root morphogenesis8.82E-03
118GO:0000038: very long-chain fatty acid metabolic process8.82E-03
119GO:0009773: photosynthetic electron transport in photosystem I8.82E-03
120GO:0009744: response to sucrose9.55E-03
121GO:0045037: protein import into chloroplast stroma9.70E-03
122GO:0015706: nitrate transport9.70E-03
123GO:0050826: response to freezing1.06E-02
124GO:0010075: regulation of meristem growth1.06E-02
125GO:0009725: response to hormone1.06E-02
126GO:0006094: gluconeogenesis1.06E-02
127GO:0005986: sucrose biosynthetic process1.06E-02
128GO:0009636: response to toxic substance1.07E-02
129GO:0009933: meristem structural organization1.16E-02
130GO:0010223: secondary shoot formation1.16E-02
131GO:0009934: regulation of meristem structural organization1.16E-02
132GO:0010207: photosystem II assembly1.16E-02
133GO:0009969: xyloglucan biosynthetic process1.25E-02
134GO:0042742: defense response to bacterium1.33E-02
135GO:0009833: plant-type primary cell wall biogenesis1.35E-02
136GO:0006071: glycerol metabolic process1.35E-02
137GO:0009416: response to light stimulus1.42E-02
138GO:0007010: cytoskeleton organization1.46E-02
139GO:0019344: cysteine biosynthetic process1.46E-02
140GO:0007017: microtubule-based process1.56E-02
141GO:0008299: isoprenoid biosynthetic process1.56E-02
142GO:0010026: trichome differentiation1.56E-02
143GO:0016998: cell wall macromolecule catabolic process1.67E-02
144GO:0080092: regulation of pollen tube growth1.78E-02
145GO:0030245: cellulose catabolic process1.78E-02
146GO:0009814: defense response, incompatible interaction1.78E-02
147GO:0040007: growth1.89E-02
148GO:0001944: vasculature development1.89E-02
149GO:0009294: DNA mediated transformation1.89E-02
150GO:0009742: brassinosteroid mediated signaling pathway1.95E-02
151GO:0019722: calcium-mediated signaling2.01E-02
152GO:0010089: xylem development2.01E-02
153GO:0010214: seed coat development2.01E-02
154GO:0006457: protein folding2.09E-02
155GO:0000413: protein peptidyl-prolyl isomerization2.25E-02
156GO:0010051: xylem and phloem pattern formation2.25E-02
157GO:0010087: phloem or xylem histogenesis2.25E-02
158GO:0048653: anther development2.25E-02
159GO:0048868: pollen tube development2.37E-02
160GO:0008360: regulation of cell shape2.37E-02
161GO:0019252: starch biosynthetic process2.63E-02
162GO:0005975: carbohydrate metabolic process2.69E-02
163GO:0016132: brassinosteroid biosynthetic process2.76E-02
164GO:0071554: cell wall organization or biogenesis2.76E-02
165GO:0032502: developmental process2.89E-02
166GO:0007264: small GTPase mediated signal transduction2.89E-02
167GO:0016032: viral process2.89E-02
168GO:0016036: cellular response to phosphate starvation2.97E-02
169GO:0010090: trichome morphogenesis3.02E-02
170GO:1901657: glycosyl compound metabolic process3.02E-02
171GO:0007267: cell-cell signaling3.30E-02
172GO:0010286: heat acclimation3.30E-02
173GO:0071805: potassium ion transmembrane transport3.30E-02
174GO:0016126: sterol biosynthetic process3.58E-02
175GO:0010029: regulation of seed germination3.73E-02
176GO:0009607: response to biotic stimulus3.73E-02
177GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.73E-02
178GO:0009627: systemic acquired resistance3.87E-02
179GO:0010411: xyloglucan metabolic process4.02E-02
180GO:0015995: chlorophyll biosynthetic process4.02E-02
181GO:0016049: cell growth4.17E-02
182GO:0018298: protein-chromophore linkage4.33E-02
183GO:0008219: cell death4.33E-02
184GO:0048481: plant ovule development4.33E-02
185GO:0009817: defense response to fungus, incompatible interaction4.33E-02
186GO:0030244: cellulose biosynthetic process4.33E-02
187GO:0048767: root hair elongation4.48E-02
188GO:0000160: phosphorelay signal transduction system4.48E-02
189GO:0009832: plant-type cell wall biogenesis4.48E-02
190GO:0009834: plant-type secondary cell wall biogenesis4.64E-02
191GO:0009658: chloroplast organization4.90E-02
RankGO TermAdjusted P value
1GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0009885: transmembrane histidine kinase cytokinin receptor activity0.00E+00
6GO:0004358: glutamate N-acetyltransferase activity0.00E+00
7GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
8GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
9GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
10GO:0050614: delta24-sterol reductase activity0.00E+00
11GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
12GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
13GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
14GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
15GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
16GO:0019955: cytokine binding0.00E+00
17GO:0050613: delta14-sterol reductase activity0.00E+00
18GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
19GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
20GO:0004148: dihydrolipoyl dehydrogenase activity1.27E-05
21GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.85E-05
22GO:0044183: protein binding involved in protein folding2.95E-05
23GO:0030570: pectate lyase activity1.61E-04
24GO:0015088: copper uptake transmembrane transporter activity2.77E-04
25GO:0051996: squalene synthase activity2.77E-04
26GO:0004001: adenosine kinase activity2.77E-04
27GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.77E-04
28GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity2.77E-04
29GO:0004013: adenosylhomocysteinase activity2.77E-04
30GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity2.77E-04
31GO:0042834: peptidoglycan binding2.77E-04
32GO:0008568: microtubule-severing ATPase activity2.77E-04
33GO:0004831: tyrosine-tRNA ligase activity2.77E-04
34GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.77E-04
35GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.09E-04
36GO:0050377: UDP-glucose 4,6-dehydratase activity6.09E-04
37GO:0009884: cytokinin receptor activity6.09E-04
38GO:0008460: dTDP-glucose 4,6-dehydratase activity6.09E-04
39GO:0004047: aminomethyltransferase activity6.09E-04
40GO:0010280: UDP-L-rhamnose synthase activity6.09E-04
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.09E-04
42GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity6.09E-04
43GO:0004802: transketolase activity6.09E-04
44GO:0016757: transferase activity, transferring glycosyl groups9.11E-04
45GO:0004075: biotin carboxylase activity9.88E-04
46GO:0004751: ribose-5-phosphate isomerase activity9.88E-04
47GO:0004781: sulfate adenylyltransferase (ATP) activity9.88E-04
48GO:0005034: osmosensor activity9.88E-04
49GO:0003979: UDP-glucose 6-dehydrogenase activity9.88E-04
50GO:0070330: aromatase activity9.88E-04
51GO:0003913: DNA photolyase activity9.88E-04
52GO:0002161: aminoacyl-tRNA editing activity9.88E-04
53GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.15E-03
54GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.15E-03
55GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.15E-03
56GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.41E-03
57GO:0001872: (1->3)-beta-D-glucan binding1.41E-03
58GO:0004375: glycine dehydrogenase (decarboxylating) activity1.41E-03
59GO:0033612: receptor serine/threonine kinase binding1.54E-03
60GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.68E-03
61GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.77E-03
62GO:0004845: uracil phosphoribosyltransferase activity1.89E-03
63GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.89E-03
64GO:0004812: aminoacyl-tRNA ligase activity2.16E-03
65GO:0004356: glutamate-ammonia ligase activity2.41E-03
66GO:0003989: acetyl-CoA carboxylase activity2.41E-03
67GO:0009922: fatty acid elongase activity2.41E-03
68GO:0018685: alkane 1-monooxygenase activity2.41E-03
69GO:0042578: phosphoric ester hydrolase activity2.98E-03
70GO:0008200: ion channel inhibitor activity2.98E-03
71GO:0080030: methyl indole-3-acetate esterase activity2.98E-03
72GO:0051082: unfolded protein binding3.19E-03
73GO:0102391: decanoate--CoA ligase activity3.58E-03
74GO:0051920: peroxiredoxin activity3.58E-03
75GO:0051753: mannan synthase activity3.58E-03
76GO:0004849: uridine kinase activity3.58E-03
77GO:0016759: cellulose synthase activity3.75E-03
78GO:0005200: structural constituent of cytoskeleton3.98E-03
79GO:0016758: transferase activity, transferring hexosyl groups4.10E-03
80GO:0043295: glutathione binding4.23E-03
81GO:0004467: long-chain fatty acid-CoA ligase activity4.23E-03
82GO:0102425: myricetin 3-O-glucosyltransferase activity4.23E-03
83GO:0102360: daphnetin 3-O-glucosyltransferase activity4.23E-03
84GO:0009881: photoreceptor activity4.23E-03
85GO:0019899: enzyme binding4.23E-03
86GO:0016209: antioxidant activity4.90E-03
87GO:0047893: flavonol 3-O-glucosyltransferase activity4.90E-03
88GO:0003843: 1,3-beta-D-glucan synthase activity5.62E-03
89GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.37E-03
90GO:0004337: geranyltranstransferase activity6.37E-03
91GO:0008889: glycerophosphodiester phosphodiesterase activity6.37E-03
92GO:0015112: nitrate transmembrane transporter activity7.15E-03
93GO:0005381: iron ion transmembrane transporter activity7.15E-03
94GO:0008194: UDP-glycosyltransferase activity7.37E-03
95GO:0004673: protein histidine kinase activity7.97E-03
96GO:0047372: acylglycerol lipase activity8.82E-03
97GO:0004161: dimethylallyltranstransferase activity8.82E-03
98GO:0005089: Rho guanyl-nucleotide exchange factor activity8.82E-03
99GO:0004364: glutathione transferase activity9.17E-03
100GO:0000049: tRNA binding9.70E-03
101GO:0008378: galactosyltransferase activity9.70E-03
102GO:0043621: protein self-association1.03E-02
103GO:0000155: phosphorelay sensor kinase activity1.06E-02
104GO:0004565: beta-galactosidase activity1.06E-02
105GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.12E-02
106GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.16E-02
107GO:0051287: NAD binding1.16E-02
108GO:0045735: nutrient reservoir activity1.53E-02
109GO:0003824: catalytic activity1.56E-02
110GO:0043424: protein histidine kinase binding1.56E-02
111GO:0015079: potassium ion transmembrane transporter activity1.56E-02
112GO:0019706: protein-cysteine S-palmitoyltransferase activity1.67E-02
113GO:0080043: quercetin 3-O-glucosyltransferase activity1.68E-02
114GO:0080044: quercetin 7-O-glucosyltransferase activity1.68E-02
115GO:0030599: pectinesterase activity1.73E-02
116GO:0016760: cellulose synthase (UDP-forming) activity1.89E-02
117GO:0008810: cellulase activity1.89E-02
118GO:0005102: receptor binding2.13E-02
119GO:0019843: rRNA binding2.31E-02
120GO:0005507: copper ion binding2.41E-02
121GO:0016829: lyase activity2.50E-02
122GO:0005516: calmodulin binding2.61E-02
123GO:0009055: electron carrier activity2.62E-02
124GO:0004872: receptor activity2.63E-02
125GO:0019901: protein kinase binding2.63E-02
126GO:0016762: xyloglucan:xyloglucosyl transferase activity2.76E-02
127GO:0008483: transaminase activity3.30E-02
128GO:0016722: oxidoreductase activity, oxidizing metal ions3.30E-02
129GO:0016597: amino acid binding3.44E-02
130GO:0016413: O-acetyltransferase activity3.44E-02
131GO:0030247: polysaccharide binding4.02E-02
132GO:0016798: hydrolase activity, acting on glycosyl bonds4.02E-02
133GO:0102483: scopolin beta-glucosidase activity4.02E-02
134GO:0004721: phosphoprotein phosphatase activity4.02E-02
135GO:0004222: metalloendopeptidase activity4.64E-02
136GO:0030145: manganese ion binding4.79E-02
137GO:0050897: cobalt ion binding4.79E-02
138GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.79E-02
139GO:0004601: peroxidase activity4.90E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009570: chloroplast stroma9.61E-15
3GO:0009941: chloroplast envelope1.70E-13
4GO:0009507: chloroplast2.12E-13
5GO:0046658: anchored component of plasma membrane2.54E-12
6GO:0031225: anchored component of membrane4.88E-11
7GO:0048046: apoplast6.23E-10
8GO:0009579: thylakoid1.36E-09
9GO:0009535: chloroplast thylakoid membrane1.57E-05
10GO:0009505: plant-type cell wall1.71E-04
11GO:0022626: cytosolic ribosome2.25E-04
12GO:0005886: plasma membrane4.82E-04
13GO:0045254: pyruvate dehydrogenase complex6.09E-04
14GO:0005576: extracellular region7.98E-04
15GO:0016020: membrane1.11E-03
16GO:0031977: thylakoid lumen1.26E-03
17GO:0005618: cell wall1.39E-03
18GO:0005960: glycine cleavage complex1.41E-03
19GO:0009534: chloroplast thylakoid1.48E-03
20GO:0031897: Tic complex1.89E-03
21GO:0005794: Golgi apparatus2.03E-03
22GO:0000139: Golgi membrane2.40E-03
23GO:0010319: stromule3.98E-03
24GO:0009543: chloroplast thylakoid lumen4.24E-03
25GO:0000148: 1,3-beta-D-glucan synthase complex5.62E-03
26GO:0009539: photosystem II reaction center5.62E-03
27GO:0005759: mitochondrial matrix5.67E-03
28GO:0045298: tubulin complex6.37E-03
29GO:0005763: mitochondrial small ribosomal subunit6.37E-03
30GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.37E-03
31GO:0016324: apical plasma membrane7.97E-03
32GO:0005856: cytoskeleton1.07E-02
33GO:0030659: cytoplasmic vesicle membrane1.16E-02
34GO:0030176: integral component of endoplasmic reticulum membrane1.25E-02
35GO:0005875: microtubule associated complex1.35E-02
36GO:0009654: photosystem II oxygen evolving complex1.56E-02
37GO:0009506: plasmodesma1.66E-02
38GO:0043231: intracellular membrane-bounded organelle2.71E-02
39GO:0005802: trans-Golgi network2.86E-02
40GO:0005768: endosome3.45E-02
41GO:0005829: cytosol3.49E-02
42GO:0005615: extracellular space3.56E-02
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Gene type



Gene DE type