GO Enrichment Analysis of Co-expressed Genes with
AT3G56310
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006987: activation of signaling protein activity involved in unfolded protein response | 0.00E+00 |
| 2 | GO:0036258: multivesicular body assembly | 0.00E+00 |
| 3 | GO:0007141: male meiosis I | 0.00E+00 |
| 4 | GO:0000731: DNA synthesis involved in DNA repair | 0.00E+00 |
| 5 | GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response | 0.00E+00 |
| 6 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 7 | GO:0010499: proteasomal ubiquitin-independent protein catabolic process | 0.00E+00 |
| 8 | GO:0010398: xylogalacturonan metabolic process | 0.00E+00 |
| 9 | GO:1900425: negative regulation of defense response to bacterium | 5.10E-05 |
| 10 | GO:0009819: drought recovery | 1.23E-04 |
| 11 | GO:0030968: endoplasmic reticulum unfolded protein response | 1.53E-04 |
| 12 | GO:0006422: aspartyl-tRNA aminoacylation | 1.64E-04 |
| 13 | GO:0010265: SCF complex assembly | 1.64E-04 |
| 14 | GO:0048508: embryonic meristem development | 1.64E-04 |
| 15 | GO:0019374: galactolipid metabolic process | 3.73E-04 |
| 16 | GO:0009945: radial axis specification | 3.73E-04 |
| 17 | GO:0015914: phospholipid transport | 3.73E-04 |
| 18 | GO:0010150: leaf senescence | 3.94E-04 |
| 19 | GO:0051707: response to other organism | 5.53E-04 |
| 20 | GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening | 6.11E-04 |
| 21 | GO:0061158: 3'-UTR-mediated mRNA destabilization | 6.11E-04 |
| 22 | GO:0080055: low-affinity nitrate transport | 6.11E-04 |
| 23 | GO:0051176: positive regulation of sulfur metabolic process | 6.11E-04 |
| 24 | GO:0070301: cellular response to hydrogen peroxide | 8.73E-04 |
| 25 | GO:0072583: clathrin-dependent endocytosis | 8.73E-04 |
| 26 | GO:0070676: intralumenal vesicle formation | 8.73E-04 |
| 27 | GO:0006986: response to unfolded protein | 8.73E-04 |
| 28 | GO:0001676: long-chain fatty acid metabolic process | 8.73E-04 |
| 29 | GO:0000187: activation of MAPK activity | 8.73E-04 |
| 30 | GO:0010116: positive regulation of abscisic acid biosynthetic process | 8.73E-04 |
| 31 | GO:2000038: regulation of stomatal complex development | 1.16E-03 |
| 32 | GO:0034613: cellular protein localization | 1.16E-03 |
| 33 | GO:0033320: UDP-D-xylose biosynthetic process | 1.16E-03 |
| 34 | GO:0030308: negative regulation of cell growth | 1.47E-03 |
| 35 | GO:0009247: glycolipid biosynthetic process | 1.47E-03 |
| 36 | GO:0046283: anthocyanin-containing compound metabolic process | 1.47E-03 |
| 37 | GO:0005513: detection of calcium ion | 1.47E-03 |
| 38 | GO:0009229: thiamine diphosphate biosynthetic process | 1.47E-03 |
| 39 | GO:0007029: endoplasmic reticulum organization | 1.47E-03 |
| 40 | GO:0048232: male gamete generation | 1.80E-03 |
| 41 | GO:0042732: D-xylose metabolic process | 1.80E-03 |
| 42 | GO:0009228: thiamine biosynthetic process | 1.80E-03 |
| 43 | GO:0035435: phosphate ion transmembrane transport | 1.80E-03 |
| 44 | GO:0001731: formation of translation preinitiation complex | 1.80E-03 |
| 45 | GO:0009612: response to mechanical stimulus | 2.17E-03 |
| 46 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.17E-03 |
| 47 | GO:0009942: longitudinal axis specification | 2.17E-03 |
| 48 | GO:2000037: regulation of stomatal complex patterning | 2.17E-03 |
| 49 | GO:1902074: response to salt | 2.55E-03 |
| 50 | GO:0050790: regulation of catalytic activity | 2.55E-03 |
| 51 | GO:1900150: regulation of defense response to fungus | 2.95E-03 |
| 52 | GO:0019375: galactolipid biosynthetic process | 2.95E-03 |
| 53 | GO:0000028: ribosomal small subunit assembly | 2.95E-03 |
| 54 | GO:0016559: peroxisome fission | 2.95E-03 |
| 55 | GO:0006644: phospholipid metabolic process | 2.95E-03 |
| 56 | GO:0006261: DNA-dependent DNA replication | 3.37E-03 |
| 57 | GO:0046685: response to arsenic-containing substance | 3.81E-03 |
| 58 | GO:0009821: alkaloid biosynthetic process | 3.81E-03 |
| 59 | GO:0090333: regulation of stomatal closure | 3.81E-03 |
| 60 | GO:0010629: negative regulation of gene expression | 4.75E-03 |
| 61 | GO:0006995: cellular response to nitrogen starvation | 4.75E-03 |
| 62 | GO:0051026: chiasma assembly | 4.75E-03 |
| 63 | GO:0016485: protein processing | 5.25E-03 |
| 64 | GO:0006260: DNA replication | 5.48E-03 |
| 65 | GO:0015706: nitrate transport | 5.77E-03 |
| 66 | GO:0000266: mitochondrial fission | 5.77E-03 |
| 67 | GO:0006364: rRNA processing | 6.10E-03 |
| 68 | GO:0010229: inflorescence development | 6.30E-03 |
| 69 | GO:0006446: regulation of translational initiation | 6.85E-03 |
| 70 | GO:0045454: cell redox homeostasis | 7.12E-03 |
| 71 | GO:0009225: nucleotide-sugar metabolic process | 7.41E-03 |
| 72 | GO:0009620: response to fungus | 7.93E-03 |
| 73 | GO:0034976: response to endoplasmic reticulum stress | 8.00E-03 |
| 74 | GO:0009553: embryo sac development | 8.42E-03 |
| 75 | GO:0000027: ribosomal large subunit assembly | 8.59E-03 |
| 76 | GO:2000377: regulation of reactive oxygen species metabolic process | 8.59E-03 |
| 77 | GO:0006874: cellular calcium ion homeostasis | 9.21E-03 |
| 78 | GO:0031408: oxylipin biosynthetic process | 9.84E-03 |
| 79 | GO:0009814: defense response, incompatible interaction | 1.05E-02 |
| 80 | GO:0016226: iron-sulfur cluster assembly | 1.05E-02 |
| 81 | GO:0007131: reciprocal meiotic recombination | 1.05E-02 |
| 82 | GO:0080092: regulation of pollen tube growth | 1.05E-02 |
| 83 | GO:0010227: floral organ abscission | 1.11E-02 |
| 84 | GO:0006012: galactose metabolic process | 1.11E-02 |
| 85 | GO:0010087: phloem or xylem histogenesis | 1.32E-02 |
| 86 | GO:0042742: defense response to bacterium | 1.33E-02 |
| 87 | GO:0045489: pectin biosynthetic process | 1.39E-02 |
| 88 | GO:0048544: recognition of pollen | 1.47E-02 |
| 89 | GO:0042752: regulation of circadian rhythm | 1.47E-02 |
| 90 | GO:0006623: protein targeting to vacuole | 1.54E-02 |
| 91 | GO:0010183: pollen tube guidance | 1.54E-02 |
| 92 | GO:0009749: response to glucose | 1.54E-02 |
| 93 | GO:0055072: iron ion homeostasis | 1.54E-02 |
| 94 | GO:0071554: cell wall organization or biogenesis | 1.62E-02 |
| 95 | GO:0002229: defense response to oomycetes | 1.62E-02 |
| 96 | GO:0000302: response to reactive oxygen species | 1.62E-02 |
| 97 | GO:1901657: glycosyl compound metabolic process | 1.77E-02 |
| 98 | GO:0010252: auxin homeostasis | 1.86E-02 |
| 99 | GO:0006310: DNA recombination | 1.86E-02 |
| 100 | GO:0051607: defense response to virus | 2.02E-02 |
| 101 | GO:0009615: response to virus | 2.10E-02 |
| 102 | GO:0009816: defense response to bacterium, incompatible interaction | 2.19E-02 |
| 103 | GO:0042128: nitrate assimilation | 2.27E-02 |
| 104 | GO:0006970: response to osmotic stress | 2.51E-02 |
| 105 | GO:0006499: N-terminal protein myristoylation | 2.72E-02 |
| 106 | GO:0009867: jasmonic acid mediated signaling pathway | 3.01E-02 |
| 107 | GO:0046777: protein autophosphorylation | 3.09E-02 |
| 108 | GO:0006631: fatty acid metabolic process | 3.40E-02 |
| 109 | GO:0009744: response to sucrose | 3.60E-02 |
| 110 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 4.12E-02 |
| 111 | GO:0000165: MAPK cascade | 4.12E-02 |
| 112 | GO:0009751: response to salicylic acid | 4.20E-02 |
| 113 | GO:0009408: response to heat | 4.26E-02 |
| 114 | GO:0006397: mRNA processing | 4.44E-02 |
| 115 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.56E-02 |
| 116 | GO:0009753: response to jasmonic acid | 4.56E-02 |
| 117 | GO:0006857: oligopeptide transport | 4.67E-02 |
| 118 | GO:0008152: metabolic process | 4.69E-02 |
| 119 | GO:0006417: regulation of translation | 4.78E-02 |
| 120 | GO:0006468: protein phosphorylation | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070577: lysine-acetylated histone binding | 0.00E+00 |
| 2 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 3 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 4 | GO:0050334: thiaminase activity | 0.00E+00 |
| 5 | GO:0016504: peptidase activator activity | 0.00E+00 |
| 6 | GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity | 0.00E+00 |
| 7 | GO:0015370: solute:sodium symporter activity | 0.00E+00 |
| 8 | GO:0004815: aspartate-tRNA ligase activity | 1.64E-04 |
| 9 | GO:0046481: digalactosyldiacylglycerol synthase activity | 1.64E-04 |
| 10 | GO:0032050: clathrin heavy chain binding | 1.64E-04 |
| 11 | GO:0008430: selenium binding | 6.11E-04 |
| 12 | GO:0016805: dipeptidase activity | 6.11E-04 |
| 13 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 6.11E-04 |
| 14 | GO:0035250: UDP-galactosyltransferase activity | 8.73E-04 |
| 15 | GO:0031176: endo-1,4-beta-xylanase activity | 8.73E-04 |
| 16 | GO:0070628: proteasome binding | 1.16E-03 |
| 17 | GO:0004301: epoxide hydrolase activity | 1.16E-03 |
| 18 | GO:0015204: urea transmembrane transporter activity | 1.16E-03 |
| 19 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 1.47E-03 |
| 20 | GO:0005496: steroid binding | 1.47E-03 |
| 21 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 1.47E-03 |
| 22 | GO:0016301: kinase activity | 1.54E-03 |
| 23 | GO:0035252: UDP-xylosyltransferase activity | 1.80E-03 |
| 24 | GO:0048040: UDP-glucuronate decarboxylase activity | 1.80E-03 |
| 25 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.91E-03 |
| 26 | GO:0005524: ATP binding | 1.96E-03 |
| 27 | GO:0051213: dioxygenase activity | 2.14E-03 |
| 28 | GO:0070403: NAD+ binding | 2.17E-03 |
| 29 | GO:0003978: UDP-glucose 4-epimerase activity | 2.17E-03 |
| 30 | GO:0008235: metalloexopeptidase activity | 2.55E-03 |
| 31 | GO:0102425: myricetin 3-O-glucosyltransferase activity | 2.55E-03 |
| 32 | GO:0102360: daphnetin 3-O-glucosyltransferase activity | 2.55E-03 |
| 33 | GO:0030515: snoRNA binding | 2.55E-03 |
| 34 | GO:0004620: phospholipase activity | 2.55E-03 |
| 35 | GO:0004674: protein serine/threonine kinase activity | 2.68E-03 |
| 36 | GO:0008194: UDP-glycosyltransferase activity | 2.86E-03 |
| 37 | GO:0047893: flavonol 3-O-glucosyltransferase activity | 2.95E-03 |
| 38 | GO:0004708: MAP kinase kinase activity | 2.95E-03 |
| 39 | GO:0030145: manganese ion binding | 3.21E-03 |
| 40 | GO:0016887: ATPase activity | 3.72E-03 |
| 41 | GO:0071949: FAD binding | 3.81E-03 |
| 42 | GO:0047617: acyl-CoA hydrolase activity | 4.27E-03 |
| 43 | GO:0016844: strictosidine synthase activity | 4.27E-03 |
| 44 | GO:0008047: enzyme activator activity | 4.75E-03 |
| 45 | GO:0015293: symporter activity | 5.09E-03 |
| 46 | GO:0001054: RNA polymerase I activity | 5.25E-03 |
| 47 | GO:0004177: aminopeptidase activity | 5.25E-03 |
| 48 | GO:0004521: endoribonuclease activity | 5.77E-03 |
| 49 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 6.10E-03 |
| 50 | GO:0000175: 3'-5'-exoribonuclease activity | 6.30E-03 |
| 51 | GO:0005315: inorganic phosphate transmembrane transporter activity | 6.30E-03 |
| 52 | GO:0004535: poly(A)-specific ribonuclease activity | 6.85E-03 |
| 53 | GO:0005217: intracellular ligand-gated ion channel activity | 7.41E-03 |
| 54 | GO:0004970: ionotropic glutamate receptor activity | 7.41E-03 |
| 55 | GO:0003887: DNA-directed DNA polymerase activity | 8.00E-03 |
| 56 | GO:0003954: NADH dehydrogenase activity | 8.59E-03 |
| 57 | GO:0043130: ubiquitin binding | 8.59E-03 |
| 58 | GO:0015035: protein disulfide oxidoreductase activity | 8.94E-03 |
| 59 | GO:0035251: UDP-glucosyltransferase activity | 9.84E-03 |
| 60 | GO:0004540: ribonuclease activity | 9.84E-03 |
| 61 | GO:0008408: 3'-5' exonuclease activity | 9.84E-03 |
| 62 | GO:0003727: single-stranded RNA binding | 1.18E-02 |
| 63 | GO:0047134: protein-disulfide reductase activity | 1.25E-02 |
| 64 | GO:0004791: thioredoxin-disulfide reductase activity | 1.47E-02 |
| 65 | GO:0004197: cysteine-type endopeptidase activity | 1.70E-02 |
| 66 | GO:0016791: phosphatase activity | 1.86E-02 |
| 67 | GO:0000166: nucleotide binding | 1.92E-02 |
| 68 | GO:0008483: transaminase activity | 1.94E-02 |
| 69 | GO:0016413: O-acetyltransferase activity | 2.02E-02 |
| 70 | GO:0102483: scopolin beta-glucosidase activity | 2.36E-02 |
| 71 | GO:0004721: phosphoprotein phosphatase activity | 2.36E-02 |
| 72 | GO:0043531: ADP binding | 2.56E-02 |
| 73 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.73E-02 |
| 74 | GO:0030246: carbohydrate binding | 2.79E-02 |
| 75 | GO:0004497: monooxygenase activity | 2.89E-02 |
| 76 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.01E-02 |
| 77 | GO:0003746: translation elongation factor activity | 3.01E-02 |
| 78 | GO:0003697: single-stranded DNA binding | 3.01E-02 |
| 79 | GO:0008422: beta-glucosidase activity | 3.20E-02 |
| 80 | GO:0004364: glutathione transferase activity | 3.50E-02 |
| 81 | GO:0035091: phosphatidylinositol binding | 3.81E-02 |
| 82 | GO:0005198: structural molecule activity | 3.91E-02 |
| 83 | GO:0009055: electron carrier activity | 4.56E-02 |
| 84 | GO:0031625: ubiquitin protein ligase binding | 4.78E-02 |
| 85 | GO:0008234: cysteine-type peptidase activity | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030014: CCR4-NOT complex | 1.64E-04 |
| 2 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 1.64E-04 |
| 3 | GO:0043625: delta DNA polymerase complex | 1.64E-04 |
| 4 | GO:0031304: intrinsic component of mitochondrial inner membrane | 3.73E-04 |
| 5 | GO:0042406: extrinsic component of endoplasmic reticulum membrane | 6.11E-04 |
| 6 | GO:0031461: cullin-RING ubiquitin ligase complex | 8.73E-04 |
| 7 | GO:0000813: ESCRT I complex | 1.47E-03 |
| 8 | GO:0016282: eukaryotic 43S preinitiation complex | 1.80E-03 |
| 9 | GO:0005778: peroxisomal membrane | 1.91E-03 |
| 10 | GO:0033290: eukaryotic 48S preinitiation complex | 2.17E-03 |
| 11 | GO:0005783: endoplasmic reticulum | 2.25E-03 |
| 12 | GO:0000794: condensed nuclear chromosome | 2.55E-03 |
| 13 | GO:0005736: DNA-directed RNA polymerase I complex | 3.81E-03 |
| 14 | GO:0031902: late endosome membrane | 4.18E-03 |
| 15 | GO:0005829: cytosol | 4.24E-03 |
| 16 | GO:0017119: Golgi transport complex | 4.75E-03 |
| 17 | GO:0030125: clathrin vesicle coat | 4.75E-03 |
| 18 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.84E-03 |
| 19 | GO:0048471: perinuclear region of cytoplasm | 5.25E-03 |
| 20 | GO:0032040: small-subunit processome | 5.77E-03 |
| 21 | GO:0016021: integral component of membrane | 6.48E-03 |
| 22 | GO:0005764: lysosome | 6.85E-03 |
| 23 | GO:0005789: endoplasmic reticulum membrane | 7.51E-03 |
| 24 | GO:0005773: vacuole | 8.98E-03 |
| 25 | GO:0005839: proteasome core complex | 9.84E-03 |
| 26 | GO:0005741: mitochondrial outer membrane | 9.84E-03 |
| 27 | GO:0000790: nuclear chromatin | 1.25E-02 |
| 28 | GO:0019898: extrinsic component of membrane | 1.54E-02 |
| 29 | GO:0005777: peroxisome | 2.29E-02 |
| 30 | GO:0009707: chloroplast outer membrane | 2.54E-02 |
| 31 | GO:0000151: ubiquitin ligase complex | 2.54E-02 |
| 32 | GO:0005886: plasma membrane | 2.77E-02 |
| 33 | GO:0005730: nucleolus | 2.91E-02 |
| 34 | GO:0005819: spindle | 3.20E-02 |
| 35 | GO:0005635: nuclear envelope | 4.67E-02 |