Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0015995: chlorophyll biosynthetic process1.36E-09
3GO:0006782: protoporphyrinogen IX biosynthetic process4.01E-09
4GO:0006783: heme biosynthetic process1.29E-06
5GO:0009735: response to cytokinin8.27E-05
6GO:0009913: epidermal cell differentiation1.20E-04
7GO:0050829: defense response to Gram-negative bacterium1.74E-04
8GO:0009245: lipid A biosynthetic process2.64E-04
9GO:0045490: pectin catabolic process2.74E-04
10GO:0006779: porphyrin-containing compound biosynthetic process2.95E-04
11GO:0006949: syncytium formation3.28E-04
12GO:0007017: microtubule-based process6.14E-04
13GO:0009831: plant-type cell wall modification involved in multidimensional cell growth7.31E-04
14GO:0042335: cuticle development8.55E-04
15GO:0009741: response to brassinosteroid8.97E-04
16GO:0048825: cotyledon development9.82E-04
17GO:0009828: plant-type cell wall loosening1.16E-03
18GO:0009627: systemic acquired resistance1.40E-03
19GO:0009664: plant-type cell wall organization2.49E-03
20GO:0042545: cell wall modification3.25E-03
21GO:0009624: response to nematode3.32E-03
22GO:0009845: seed germination4.08E-03
23GO:0006633: fatty acid biosynthetic process4.52E-03
24GO:0040008: regulation of growth4.66E-03
25GO:0007275: multicellular organism development5.04E-03
26GO:0009826: unidimensional cell growth6.33E-03
27GO:0015979: photosynthesis8.28E-03
28GO:0016042: lipid catabolic process9.72E-03
29GO:0009734: auxin-activated signaling pathway1.26E-02
30GO:0009416: response to light stimulus1.49E-02
31GO:0009733: response to auxin2.67E-02
32GO:0046686: response to cadmium ion3.37E-02
RankGO TermAdjusted P value
1GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
2GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity6.71E-06
3GO:0004712: protein serine/threonine/tyrosine kinase activity6.26E-05
4GO:0031177: phosphopantetheine binding1.20E-04
5GO:0000035: acyl binding1.46E-04
6GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process2.03E-04
7GO:0030570: pectate lyase activity7.31E-04
8GO:0005200: structural constituent of cytoskeleton1.20E-03
9GO:0045330: aspartyl esterase activity2.80E-03
10GO:0030599: pectinesterase activity3.19E-03
11GO:0016829: lyase activity4.08E-03
12GO:0046910: pectinesterase inhibitor activity4.59E-03
13GO:0016788: hydrolase activity, acting on ester bonds6.59E-03
14GO:0052689: carboxylic ester hydrolase activity8.10E-03
15GO:0003924: GTPase activity9.92E-03
16GO:0008289: lipid binding1.25E-02
17GO:0005525: GTP binding2.12E-02
18GO:0005515: protein binding2.96E-02
19GO:0004672: protein kinase activity3.23E-02
20GO:0016301: kinase activity4.32E-02
RankGO TermAdjusted P value
1GO:0009535: chloroplast thylakoid membrane3.14E-06
2GO:0009534: chloroplast thylakoid4.67E-06
3GO:0009507: chloroplast1.52E-05
4GO:0009570: chloroplast stroma4.18E-05
5GO:0009543: chloroplast thylakoid lumen1.97E-04
6GO:0009538: photosystem I reaction center2.03E-04
7GO:0045298: tubulin complex2.64E-04
8GO:0071944: cell periphery1.11E-03
9GO:0005618: cell wall1.43E-03
10GO:0009579: thylakoid1.54E-03
11GO:0009941: chloroplast envelope1.78E-03
12GO:0031977: thylakoid lumen2.03E-03
13GO:0010287: plastoglobule3.73E-03
14GO:0005874: microtubule7.37E-03
15GO:0031969: chloroplast membrane7.55E-03
16GO:0016020: membrane9.74E-03
17GO:0009505: plant-type cell wall2.89E-02
18GO:0005829: cytosol4.33E-02
19GO:0005576: extracellular region4.47E-02
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Gene type



Gene DE type