GO Enrichment Analysis of Co-expressed Genes with
AT3G55850
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2001253: regulation of histone H3-K36 trimethylation | 0.00E+00 |
| 2 | GO:0019481: L-alanine catabolic process, by transamination | 0.00E+00 |
| 3 | GO:0010793: regulation of mRNA export from nucleus | 0.00E+00 |
| 4 | GO:2000541: positive regulation of protein geranylgeranylation | 0.00E+00 |
| 5 | GO:0000188: inactivation of MAPK activity | 0.00E+00 |
| 6 | GO:0043633: polyadenylation-dependent RNA catabolic process | 0.00E+00 |
| 7 | GO:0006903: vesicle targeting | 0.00E+00 |
| 8 | GO:0008219: cell death | 9.19E-06 |
| 9 | GO:0009612: response to mechanical stimulus | 4.86E-05 |
| 10 | GO:0010044: response to aluminum ion | 6.54E-05 |
| 11 | GO:0009626: plant-type hypersensitive response | 7.07E-05 |
| 12 | GO:2000031: regulation of salicylic acid mediated signaling pathway | 1.07E-04 |
| 13 | GO:0035344: hypoxanthine transport | 1.30E-04 |
| 14 | GO:0043985: histone H4-R3 methylation | 1.30E-04 |
| 15 | GO:0006643: membrane lipid metabolic process | 1.30E-04 |
| 16 | GO:0031338: regulation of vesicle fusion | 1.30E-04 |
| 17 | GO:0098721: uracil import across plasma membrane | 1.30E-04 |
| 18 | GO:0006144: purine nucleobase metabolic process | 1.30E-04 |
| 19 | GO:0098702: adenine import across plasma membrane | 1.30E-04 |
| 20 | GO:1902466: positive regulation of histone H3-K27 trimethylation | 1.30E-04 |
| 21 | GO:0098710: guanine import across plasma membrane | 1.30E-04 |
| 22 | GO:0048482: plant ovule morphogenesis | 1.30E-04 |
| 23 | GO:0019628: urate catabolic process | 1.30E-04 |
| 24 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 1.58E-04 |
| 25 | GO:0052542: defense response by callose deposition | 2.99E-04 |
| 26 | GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine | 2.99E-04 |
| 27 | GO:0080185: effector dependent induction by symbiont of host immune response | 2.99E-04 |
| 28 | GO:0050684: regulation of mRNA processing | 2.99E-04 |
| 29 | GO:0080188: RNA-directed DNA methylation | 3.67E-04 |
| 30 | GO:0006468: protein phosphorylation | 4.06E-04 |
| 31 | GO:0032784: regulation of DNA-templated transcription, elongation | 4.92E-04 |
| 32 | GO:0090630: activation of GTPase activity | 4.92E-04 |
| 33 | GO:0046621: negative regulation of organ growth | 4.92E-04 |
| 34 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 6.01E-04 |
| 35 | GO:0009611: response to wounding | 6.02E-04 |
| 36 | GO:0009399: nitrogen fixation | 7.04E-04 |
| 37 | GO:0006612: protein targeting to membrane | 7.04E-04 |
| 38 | GO:0006893: Golgi to plasma membrane transport | 7.04E-04 |
| 39 | GO:0048194: Golgi vesicle budding | 7.04E-04 |
| 40 | GO:0072334: UDP-galactose transmembrane transport | 7.04E-04 |
| 41 | GO:0046323: glucose import | 8.87E-04 |
| 42 | GO:0061088: regulation of sequestering of zinc ion | 9.34E-04 |
| 43 | GO:0006542: glutamine biosynthetic process | 9.34E-04 |
| 44 | GO:0007264: small GTPase mediated signal transduction | 1.15E-03 |
| 45 | GO:0006090: pyruvate metabolic process | 1.18E-03 |
| 46 | GO:0005513: detection of calcium ion | 1.18E-03 |
| 47 | GO:0018344: protein geranylgeranylation | 1.18E-03 |
| 48 | GO:0010225: response to UV-C | 1.18E-03 |
| 49 | GO:0010337: regulation of salicylic acid metabolic process | 1.45E-03 |
| 50 | GO:0006014: D-ribose metabolic process | 1.45E-03 |
| 51 | GO:0050665: hydrogen peroxide biosynthetic process | 1.45E-03 |
| 52 | GO:0048317: seed morphogenesis | 1.45E-03 |
| 53 | GO:0001666: response to hypoxia | 1.55E-03 |
| 54 | GO:0009816: defense response to bacterium, incompatible interaction | 1.63E-03 |
| 55 | GO:0009627: systemic acquired resistance | 1.72E-03 |
| 56 | GO:0000911: cytokinesis by cell plate formation | 1.73E-03 |
| 57 | GO:0009423: chorismate biosynthetic process | 1.73E-03 |
| 58 | GO:0006470: protein dephosphorylation | 1.93E-03 |
| 59 | GO:0009617: response to bacterium | 2.03E-03 |
| 60 | GO:0006955: immune response | 2.04E-03 |
| 61 | GO:0046470: phosphatidylcholine metabolic process | 2.04E-03 |
| 62 | GO:0006499: N-terminal protein myristoylation | 2.21E-03 |
| 63 | GO:0030162: regulation of proteolysis | 2.36E-03 |
| 64 | GO:0006875: cellular metal ion homeostasis | 2.36E-03 |
| 65 | GO:0019375: galactolipid biosynthetic process | 2.36E-03 |
| 66 | GO:0032875: regulation of DNA endoreduplication | 2.36E-03 |
| 67 | GO:0060321: acceptance of pollen | 2.69E-03 |
| 68 | GO:0006303: double-strand break repair via nonhomologous end joining | 2.69E-03 |
| 69 | GO:0010093: specification of floral organ identity | 2.69E-03 |
| 70 | GO:0010112: regulation of systemic acquired resistance | 3.04E-03 |
| 71 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.04E-03 |
| 72 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 3.41E-03 |
| 73 | GO:0000723: telomere maintenance | 3.41E-03 |
| 74 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.87E-03 |
| 75 | GO:0031347: regulation of defense response | 3.93E-03 |
| 76 | GO:0006812: cation transport | 4.08E-03 |
| 77 | GO:0009682: induced systemic resistance | 4.18E-03 |
| 78 | GO:0009073: aromatic amino acid family biosynthetic process | 4.18E-03 |
| 79 | GO:0030148: sphingolipid biosynthetic process | 4.18E-03 |
| 80 | GO:0009698: phenylpropanoid metabolic process | 4.18E-03 |
| 81 | GO:0071365: cellular response to auxin stimulus | 4.58E-03 |
| 82 | GO:0006886: intracellular protein transport | 4.84E-03 |
| 83 | GO:0006108: malate metabolic process | 5.00E-03 |
| 84 | GO:0010030: positive regulation of seed germination | 5.88E-03 |
| 85 | GO:0009969: xyloglucan biosynthetic process | 5.88E-03 |
| 86 | GO:0007031: peroxisome organization | 5.88E-03 |
| 87 | GO:0009742: brassinosteroid mediated signaling pathway | 6.59E-03 |
| 88 | GO:0009695: jasmonic acid biosynthetic process | 7.30E-03 |
| 89 | GO:0031408: oxylipin biosynthetic process | 7.79E-03 |
| 90 | GO:0051260: protein homooligomerization | 7.79E-03 |
| 91 | GO:0042742: defense response to bacterium | 8.00E-03 |
| 92 | GO:0035428: hexose transmembrane transport | 8.30E-03 |
| 93 | GO:0031348: negative regulation of defense response | 8.30E-03 |
| 94 | GO:0071456: cellular response to hypoxia | 8.30E-03 |
| 95 | GO:0071215: cellular response to abscisic acid stimulus | 8.82E-03 |
| 96 | GO:0009625: response to insect | 8.82E-03 |
| 97 | GO:0042631: cellular response to water deprivation | 1.04E-02 |
| 98 | GO:0006885: regulation of pH | 1.10E-02 |
| 99 | GO:0048544: recognition of pollen | 1.16E-02 |
| 100 | GO:0061025: membrane fusion | 1.16E-02 |
| 101 | GO:0019252: starch biosynthetic process | 1.22E-02 |
| 102 | GO:0007166: cell surface receptor signaling pathway | 1.23E-02 |
| 103 | GO:0002229: defense response to oomycetes | 1.28E-02 |
| 104 | GO:0000302: response to reactive oxygen species | 1.28E-02 |
| 105 | GO:0006310: DNA recombination | 1.46E-02 |
| 106 | GO:0006904: vesicle docking involved in exocytosis | 1.53E-02 |
| 107 | GO:0046686: response to cadmium ion | 1.56E-02 |
| 108 | GO:0051607: defense response to virus | 1.59E-02 |
| 109 | GO:0055085: transmembrane transport | 1.70E-02 |
| 110 | GO:0042128: nitrate assimilation | 1.79E-02 |
| 111 | GO:0048573: photoperiodism, flowering | 1.86E-02 |
| 112 | GO:0006950: response to stress | 1.86E-02 |
| 113 | GO:0016049: cell growth | 1.93E-02 |
| 114 | GO:0009817: defense response to fungus, incompatible interaction | 2.00E-02 |
| 115 | GO:0010311: lateral root formation | 2.07E-02 |
| 116 | GO:0009813: flavonoid biosynthetic process | 2.07E-02 |
| 117 | GO:0016192: vesicle-mediated transport | 2.18E-02 |
| 118 | GO:0046777: protein autophosphorylation | 2.22E-02 |
| 119 | GO:0010043: response to zinc ion | 2.22E-02 |
| 120 | GO:0009867: jasmonic acid mediated signaling pathway | 2.37E-02 |
| 121 | GO:0045087: innate immune response | 2.37E-02 |
| 122 | GO:0016051: carbohydrate biosynthetic process | 2.37E-02 |
| 123 | GO:0006099: tricarboxylic acid cycle | 2.45E-02 |
| 124 | GO:0006887: exocytosis | 2.68E-02 |
| 125 | GO:0006897: endocytosis | 2.68E-02 |
| 126 | GO:0051707: response to other organism | 2.84E-02 |
| 127 | GO:0016042: lipid catabolic process | 2.97E-02 |
| 128 | GO:0009408: response to heat | 3.06E-02 |
| 129 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 3.25E-02 |
| 130 | GO:0009846: pollen germination | 3.34E-02 |
| 131 | GO:0006364: rRNA processing | 3.51E-02 |
| 132 | GO:0006486: protein glycosylation | 3.51E-02 |
| 133 | GO:0006813: potassium ion transport | 3.51E-02 |
| 134 | GO:0010224: response to UV-B | 3.60E-02 |
| 135 | GO:0050832: defense response to fungus | 4.04E-02 |
| 136 | GO:0015031: protein transport | 4.11E-02 |
| 137 | GO:0009620: response to fungus | 4.23E-02 |
| 138 | GO:0016569: covalent chromatin modification | 4.32E-02 |
| 139 | GO:0009624: response to nematode | 4.51E-02 |
| 140 | GO:0018105: peptidyl-serine phosphorylation | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015575: mannitol transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0005092: GDP-dissociation inhibitor activity | 0.00E+00 |
| 3 | GO:0004846: urate oxidase activity | 0.00E+00 |
| 4 | GO:0033746: histone demethylase activity (H3-R2 specific) | 0.00E+00 |
| 5 | GO:0015591: D-ribose transmembrane transporter activity | 0.00E+00 |
| 6 | GO:0015148: D-xylose transmembrane transporter activity | 0.00E+00 |
| 7 | GO:0033749: histone demethylase activity (H4-R3 specific) | 0.00E+00 |
| 8 | GO:0005365: myo-inositol transmembrane transporter activity | 0.00E+00 |
| 9 | GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity | 0.00E+00 |
| 10 | GO:0015576: sorbitol transmembrane transporter activity | 0.00E+00 |
| 11 | GO:0005524: ATP binding | 1.82E-06 |
| 12 | GO:0017137: Rab GTPase binding | 2.30E-05 |
| 13 | GO:0015294: solute:cation symporter activity | 1.30E-04 |
| 14 | GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity | 1.30E-04 |
| 15 | GO:0015207: adenine transmembrane transporter activity | 1.30E-04 |
| 16 | GO:0015168: glycerol transmembrane transporter activity | 1.30E-04 |
| 17 | GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity | 1.30E-04 |
| 18 | GO:1901149: salicylic acid binding | 1.30E-04 |
| 19 | GO:0015208: guanine transmembrane transporter activity | 1.30E-04 |
| 20 | GO:0004713: protein tyrosine kinase activity | 1.87E-04 |
| 21 | GO:0005096: GTPase activator activity | 2.00E-04 |
| 22 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 2.89E-04 |
| 23 | GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity | 2.99E-04 |
| 24 | GO:0045140: inositol phosphoceramide synthase activity | 2.99E-04 |
| 25 | GO:0004725: protein tyrosine phosphatase activity | 4.10E-04 |
| 26 | GO:0008253: 5'-nucleotidase activity | 4.92E-04 |
| 27 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 4.92E-04 |
| 28 | GO:0004383: guanylate cyclase activity | 4.92E-04 |
| 29 | GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity | 4.92E-04 |
| 30 | GO:0005093: Rab GDP-dissociation inhibitor activity | 4.92E-04 |
| 31 | GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity | 7.04E-04 |
| 32 | GO:0005354: galactose transmembrane transporter activity | 7.04E-04 |
| 33 | GO:0001653: peptide receptor activity | 7.04E-04 |
| 34 | GO:0004470: malic enzyme activity | 9.34E-04 |
| 35 | GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor | 9.34E-04 |
| 36 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 9.34E-04 |
| 37 | GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity | 9.34E-04 |
| 38 | GO:0015210: uracil transmembrane transporter activity | 9.34E-04 |
| 39 | GO:0005355: glucose transmembrane transporter activity | 9.50E-04 |
| 40 | GO:0008948: oxaloacetate decarboxylase activity | 1.18E-03 |
| 41 | GO:0005546: phosphatidylinositol-4,5-bisphosphate binding | 1.18E-03 |
| 42 | GO:0004356: glutamate-ammonia ligase activity | 1.18E-03 |
| 43 | GO:0045431: flavonol synthase activity | 1.18E-03 |
| 44 | GO:0005459: UDP-galactose transmembrane transporter activity | 1.18E-03 |
| 45 | GO:0015145: monosaccharide transmembrane transporter activity | 1.18E-03 |
| 46 | GO:0004674: protein serine/threonine kinase activity | 1.19E-03 |
| 47 | GO:0015144: carbohydrate transmembrane transporter activity | 1.36E-03 |
| 48 | GO:0015562: efflux transmembrane transporter activity | 1.45E-03 |
| 49 | GO:0005351: sugar:proton symporter activity | 1.58E-03 |
| 50 | GO:0004012: phospholipid-translocating ATPase activity | 1.73E-03 |
| 51 | GO:0004747: ribokinase activity | 1.73E-03 |
| 52 | GO:0004620: phospholipase activity | 2.04E-03 |
| 53 | GO:0042162: telomeric DNA binding | 2.04E-03 |
| 54 | GO:0008865: fructokinase activity | 2.36E-03 |
| 55 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 2.36E-03 |
| 56 | GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity | 2.69E-03 |
| 57 | GO:0004630: phospholipase D activity | 2.69E-03 |
| 58 | GO:0004003: ATP-dependent DNA helicase activity | 3.04E-03 |
| 59 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 3.04E-03 |
| 60 | GO:0008417: fucosyltransferase activity | 3.04E-03 |
| 61 | GO:0016207: 4-coumarate-CoA ligase activity | 3.04E-03 |
| 62 | GO:0016301: kinase activity | 3.50E-03 |
| 63 | GO:0047372: acylglycerol lipase activity | 4.18E-03 |
| 64 | GO:0004022: alcohol dehydrogenase (NAD) activity | 5.00E-03 |
| 65 | GO:0005516: calmodulin binding | 5.10E-03 |
| 66 | GO:0005385: zinc ion transmembrane transporter activity | 6.81E-03 |
| 67 | GO:0043130: ubiquitin binding | 6.81E-03 |
| 68 | GO:0005509: calcium ion binding | 7.08E-03 |
| 69 | GO:0008324: cation transmembrane transporter activity | 7.30E-03 |
| 70 | GO:0033612: receptor serine/threonine kinase binding | 7.79E-03 |
| 71 | GO:0008408: 3'-5' exonuclease activity | 7.79E-03 |
| 72 | GO:0005215: transporter activity | 9.32E-03 |
| 73 | GO:0005451: monovalent cation:proton antiporter activity | 1.04E-02 |
| 74 | GO:0016887: ATPase activity | 1.06E-02 |
| 75 | GO:0015299: solute:proton antiporter activity | 1.16E-02 |
| 76 | GO:0010181: FMN binding | 1.16E-02 |
| 77 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.37E-02 |
| 78 | GO:0015385: sodium:proton antiporter activity | 1.40E-02 |
| 79 | GO:0003684: damaged DNA binding | 1.46E-02 |
| 80 | GO:0000287: magnesium ion binding | 1.64E-02 |
| 81 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.79E-02 |
| 82 | GO:0030247: polysaccharide binding | 1.86E-02 |
| 83 | GO:0004683: calmodulin-dependent protein kinase activity | 1.86E-02 |
| 84 | GO:0005515: protein binding | 2.24E-02 |
| 85 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.45E-02 |
| 86 | GO:0008422: beta-glucosidase activity | 2.52E-02 |
| 87 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.52E-02 |
| 88 | GO:0005484: SNAP receptor activity | 2.84E-02 |
| 89 | GO:0051287: NAD binding | 3.25E-02 |
| 90 | GO:0003690: double-stranded DNA binding | 3.60E-02 |
| 91 | GO:0016298: lipase activity | 3.60E-02 |
| 92 | GO:0015171: amino acid transmembrane transporter activity | 3.77E-02 |
| 93 | GO:0031625: ubiquitin protein ligase binding | 3.77E-02 |
| 94 | GO:0045735: nutrient reservoir activity | 3.95E-02 |
| 95 | GO:0016491: oxidoreductase activity | 4.30E-02 |
| 96 | GO:0016874: ligase activity | 4.32E-02 |
| 97 | GO:0022857: transmembrane transporter activity | 4.32E-02 |
| 98 | GO:0016746: transferase activity, transferring acyl groups | 4.60E-02 |
| 99 | GO:0004386: helicase activity | 4.80E-02 |
| 100 | GO:0004672: protein kinase activity | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005886: plasma membrane | 1.56E-06 |
| 2 | GO:0045252: oxoglutarate dehydrogenase complex | 1.30E-04 |
| 3 | GO:0043564: Ku70:Ku80 complex | 1.30E-04 |
| 4 | GO:0043234: protein complex | 4.10E-04 |
| 5 | GO:0016021: integral component of membrane | 4.18E-04 |
| 6 | GO:0000176: nuclear exosome (RNase complex) | 4.92E-04 |
| 7 | GO:0005968: Rab-protein geranylgeranyltransferase complex | 7.04E-04 |
| 8 | GO:0030173: integral component of Golgi membrane | 1.73E-03 |
| 9 | GO:0030131: clathrin adaptor complex | 2.36E-03 |
| 10 | GO:0000784: nuclear chromosome, telomeric region | 2.69E-03 |
| 11 | GO:0030125: clathrin vesicle coat | 3.79E-03 |
| 12 | GO:0005802: trans-Golgi network | 5.61E-03 |
| 13 | GO:0030176: integral component of endoplasmic reticulum membrane | 5.88E-03 |
| 14 | GO:0005741: mitochondrial outer membrane | 7.79E-03 |
| 15 | GO:0005905: clathrin-coated pit | 7.79E-03 |
| 16 | GO:0005794: Golgi apparatus | 1.02E-02 |
| 17 | GO:0009504: cell plate | 1.22E-02 |
| 18 | GO:0000145: exocyst | 1.34E-02 |
| 19 | GO:0032580: Golgi cisterna membrane | 1.46E-02 |
| 20 | GO:0005774: vacuolar membrane | 1.72E-02 |
| 21 | GO:0016020: membrane | 1.75E-02 |
| 22 | GO:0019005: SCF ubiquitin ligase complex | 2.00E-02 |
| 23 | GO:0000325: plant-type vacuole | 2.22E-02 |
| 24 | GO:0005622: intracellular | 2.60E-02 |
| 25 | GO:0005768: endosome | 2.68E-02 |
| 26 | GO:0005856: cytoskeleton | 3.08E-02 |
| 27 | GO:0010008: endosome membrane | 4.04E-02 |
| 28 | GO:0012505: endomembrane system | 4.41E-02 |