co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009992: cellular water homeostasis	0.00E+00
2	GO:0051553: flavone biosynthetic process	0.00E+00
3	GO:0032499: detection of peptidoglycan	0.00E+00
4	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
5	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
6	GO:0042742: defense response to bacterium	5.29E-10
7	GO:0006468: protein phosphorylation	3.99E-09
8	GO:0006517: protein deglycosylation	8.95E-06
9	GO:0000187: activation of MAPK activity	2.04E-05
10	GO:0060548: negative regulation of cell death	3.72E-05
11	GO:0010227: floral organ abscission	1.09E-04
12	GO:2000037: regulation of stomatal complex patterning	1.21E-04
13	GO:0006952: defense response	2.04E-04
14	GO:0046938: phytochelatin biosynthetic process	2.29E-04
15	GO:0043687: post-translational protein modification	2.29E-04
16	GO:0055081: anion homeostasis	2.29E-04
17	GO:0006643: membrane lipid metabolic process	2.29E-04
18	GO:0002143: tRNA wobble position uridine thiolation	2.29E-04
19	GO:0006680: glucosylceramide catabolic process	2.29E-04
20	GO:0032491: detection of molecule of fungal origin	2.29E-04
21	GO:0009968: negative regulation of signal transduction	2.29E-04
22	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	2.29E-04
23	GO:0048482: plant ovule morphogenesis	2.29E-04
24	GO:0010365: positive regulation of ethylene biosynthetic process	2.29E-04
25	GO:0043547: positive regulation of GTPase activity	2.29E-04
26	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.51E-04
27	GO:0009620: response to fungus	3.01E-04
28	GO:0043069: negative regulation of programmed cell death	4.23E-04
29	GO:0010200: response to chitin	4.66E-04
30	GO:0052544: defense response by callose deposition in cell wall	4.90E-04
31	GO:0006212: uracil catabolic process	5.10E-04
32	GO:0043066: negative regulation of apoptotic process	5.10E-04
33	GO:0019483: beta-alanine biosynthetic process	5.10E-04
34	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.10E-04
35	GO:0002221: pattern recognition receptor signaling pathway	5.10E-04
36	GO:0080185: effector dependent induction by symbiont of host immune response	5.10E-04
37	GO:0009817: defense response to fungus, incompatible interaction	5.38E-04
38	GO:0008219: cell death	5.38E-04
39	GO:0010229: inflorescence development	6.36E-04
40	GO:0070588: calcium ion transmembrane transport	8.00E-04
41	GO:0010498: proteasomal protein catabolic process	8.29E-04
42	GO:0042344: indole glucosinolate catabolic process	8.29E-04
43	GO:1900140: regulation of seedling development	8.29E-04
44	GO:0046621: negative regulation of organ growth	8.29E-04
45	GO:0015783: GDP-fucose transport	8.29E-04
46	GO:0009751: response to salicylic acid	8.55E-04
47	GO:0006470: protein dephosphorylation	9.90E-04
48	GO:0007166: cell surface receptor signaling pathway	9.90E-04
49	GO:0009617: response to bacterium	1.06E-03
50	GO:0072583: clathrin-dependent endocytosis	1.18E-03
51	GO:0006516: glycoprotein catabolic process	1.18E-03
52	GO:0015700: arsenite transport	1.18E-03
53	GO:0002679: respiratory burst involved in defense response	1.18E-03
54	GO:0071323: cellular response to chitin	1.18E-03
55	GO:0006882: cellular zinc ion homeostasis	1.18E-03
56	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.18E-03
57	GO:0048194: Golgi vesicle budding	1.18E-03
58	GO:0009311: oligosaccharide metabolic process	1.18E-03
59	GO:0002239: response to oomycetes	1.18E-03
60	GO:0009814: defense response, incompatible interaction	1.29E-03
61	GO:0031348: negative regulation of defense response	1.29E-03
62	GO:0071219: cellular response to molecule of bacterial origin	1.57E-03
63	GO:2000038: regulation of stomatal complex development	1.57E-03
64	GO:0010188: response to microbial phytotoxin	1.57E-03
65	GO:0080142: regulation of salicylic acid biosynthetic process	1.57E-03
66	GO:0048830: adventitious root development	1.57E-03
67	GO:0009626: plant-type hypersensitive response	1.93E-03
68	GO:0030041: actin filament polymerization	2.01E-03
69	GO:0018279: protein N-linked glycosylation via asparagine	2.01E-03
70	GO:0031365: N-terminal protein amino acid modification	2.01E-03
71	GO:0002229: defense response to oomycetes	2.36E-03
72	GO:0046777: protein autophosphorylation	2.40E-03
73	GO:0048317: seed morphogenesis	2.48E-03
74	GO:0047484: regulation of response to osmotic stress	2.48E-03
75	GO:0009759: indole glucosinolate biosynthetic process	2.48E-03
76	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.48E-03
77	GO:0030163: protein catabolic process	2.69E-03
78	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.97E-03
79	GO:0000911: cytokinesis by cell plate formation	2.97E-03
80	GO:0009612: response to mechanical stimulus	2.97E-03
81	GO:0006694: steroid biosynthetic process	2.97E-03
82	GO:0007165: signal transduction	3.36E-03
83	GO:1900056: negative regulation of leaf senescence	3.50E-03
84	GO:0010044: response to aluminum ion	3.50E-03
85	GO:0010161: red light signaling pathway	3.50E-03
86	GO:0046470: phosphatidylcholine metabolic process	3.50E-03
87	GO:0043090: amino acid import	3.50E-03
88	GO:0071446: cellular response to salicylic acid stimulus	3.50E-03
89	GO:0009816: defense response to bacterium, incompatible interaction	3.60E-03
90	GO:0009627: systemic acquired resistance	3.80E-03
91	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.06E-03
92	GO:0030162: regulation of proteolysis	4.06E-03
93	GO:0006491: N-glycan processing	4.06E-03
94	GO:0006875: cellular metal ion homeostasis	4.06E-03
95	GO:0032875: regulation of DNA endoreduplication	4.06E-03
96	GO:0006102: isocitrate metabolic process	4.06E-03
97	GO:0006367: transcription initiation from RNA polymerase II promoter	4.65E-03
98	GO:0043562: cellular response to nitrogen levels	4.65E-03
99	GO:0006303: double-strand break repair via nonhomologous end joining	4.65E-03
100	GO:0006002: fructose 6-phosphate metabolic process	4.65E-03
101	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	4.65E-03
102	GO:0009813: flavonoid biosynthetic process	4.66E-03
103	GO:0006499: N-terminal protein myristoylation	4.89E-03
104	GO:0051865: protein autoubiquitination	5.27E-03
105	GO:0010112: regulation of systemic acquired resistance	5.27E-03
106	GO:0015780: nucleotide-sugar transport	5.27E-03
107	GO:0046685: response to arsenic-containing substance	5.27E-03
108	GO:0006099: tricarboxylic acid cycle	5.88E-03
109	GO:0000723: telomere maintenance	5.91E-03
110	GO:0009086: methionine biosynthetic process	5.91E-03
111	GO:0048268: clathrin coat assembly	5.91E-03
112	GO:0071577: zinc II ion transmembrane transport	5.91E-03
113	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.58E-03
114	GO:0009641: shade avoidance	6.58E-03
115	GO:0050832: defense response to fungus	7.22E-03
116	GO:0009698: phenylpropanoid metabolic process	7.28E-03
117	GO:0009682: induced systemic resistance	7.28E-03
118	GO:0019684: photosynthesis, light reaction	7.28E-03
119	GO:0030148: sphingolipid biosynthetic process	7.28E-03
120	GO:0009684: indoleacetic acid biosynthetic process	7.28E-03
121	GO:0008643: carbohydrate transport	7.84E-03
122	GO:0000266: mitochondrial fission	8.00E-03
123	GO:0010102: lateral root morphogenesis	8.75E-03
124	GO:0006807: nitrogen compound metabolic process	8.75E-03
125	GO:2000028: regulation of photoperiodism, flowering	8.75E-03
126	GO:0055046: microgametogenesis	8.75E-03
127	GO:0031347: regulation of defense response	8.78E-03
128	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	8.78E-03
129	GO:0000165: MAPK cascade	8.78E-03
130	GO:0080188: RNA-directed DNA methylation	1.03E-02
131	GO:0010053: root epidermal cell differentiation	1.03E-02
132	GO:0000162: tryptophan biosynthetic process	1.11E-02
133	GO:0009695: jasmonic acid biosynthetic process	1.28E-02
134	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.46E-02
135	GO:0030433: ubiquitin-dependent ERAD pathway	1.46E-02
136	GO:0009742: brassinosteroid mediated signaling pathway	1.48E-02
137	GO:0009561: megagametogenesis	1.65E-02
138	GO:0042127: regulation of cell proliferation	1.65E-02
139	GO:0009306: protein secretion	1.65E-02
140	GO:0000413: protein peptidyl-prolyl isomerization	1.85E-02
141	GO:0008360: regulation of cell shape	1.95E-02
142	GO:0006885: regulation of pH	1.95E-02
143	GO:0010197: polar nucleus fusion	1.95E-02
144	GO:0010182: sugar mediated signaling pathway	1.95E-02
145	GO:0048544: recognition of pollen	2.05E-02
146	GO:0061025: membrane fusion	2.05E-02
147	GO:0006623: protein targeting to vacuole	2.16E-02
148	GO:0010183: pollen tube guidance	2.16E-02
149	GO:0009749: response to glucose	2.16E-02
150	GO:0010193: response to ozone	2.27E-02
151	GO:0000302: response to reactive oxygen species	2.27E-02
152	GO:0007264: small GTPase mediated signal transduction	2.37E-02
153	GO:0010150: leaf senescence	2.42E-02
154	GO:0045490: pectin catabolic process	2.42E-02
155	GO:0006310: DNA recombination	2.60E-02
156	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.71E-02
157	GO:0006904: vesicle docking involved in exocytosis	2.71E-02
158	GO:0016126: sterol biosynthetic process	2.94E-02
159	GO:0009607: response to biotic stimulus	3.06E-02
160	GO:0016049: cell growth	3.43E-02
161	GO:0010119: regulation of stomatal movement	3.94E-02
162	GO:0006865: amino acid transport	4.08E-02
163	GO:0045087: innate immune response	4.21E-02
164	GO:0030001: metal ion transport	4.62E-02
165	GO:0006887: exocytosis	4.76E-02
166	GO:0006897: endocytosis	4.76E-02
167	GO:0016192: vesicle-mediated transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0004164: diphthine synthase activity	0.00E+00
2	GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity	0.00E+00
3	GO:0061605: molybdopterin-synthase adenylyltransferase activity	0.00E+00
4	GO:0000247: C-8 sterol isomerase activity	0.00E+00
5	GO:0047750: cholestenol delta-isomerase activity	0.00E+00
6	GO:2001080: chitosan binding	0.00E+00
7	GO:0033759: flavone synthase activity	0.00E+00
8	GO:0061604: molybdopterin-synthase sulfurtransferase activity	0.00E+00
9	GO:0003837: beta-ureidopropionase activity	0.00E+00
10	GO:0005524: ATP binding	2.28E-07
11	GO:0016301: kinase activity	3.77E-07
12	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.05E-06
13	GO:0004674: protein serine/threonine kinase activity	7.55E-06
14	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.98E-05
15	GO:0004576: oligosaccharyl transferase activity	3.72E-05
16	GO:0033612: receptor serine/threonine kinase binding	8.30E-05
17	GO:0004672: protein kinase activity	1.18E-04
18	GO:0004012: phospholipid-translocating ATPase activity	1.21E-04
19	GO:0004708: MAP kinase kinase activity	2.03E-04
20	GO:0015085: calcium ion transmembrane transporter activity	2.29E-04
21	GO:0046870: cadmium ion binding	2.29E-04
22	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	2.29E-04
23	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.29E-04
24	GO:0004348: glucosylceramidase activity	2.29E-04
25	GO:0071992: phytochelatin transmembrane transporter activity	2.29E-04
26	GO:0047150: betaine-homocysteine S-methyltransferase activity	2.29E-04
27	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.29E-04
28	GO:0032050: clathrin heavy chain binding	2.29E-04
29	GO:1901149: salicylic acid binding	2.29E-04
30	GO:0005516: calmodulin binding	3.44E-04
31	GO:0045140: inositol phosphoceramide synthase activity	5.10E-04
32	GO:0005388: calcium-transporting ATPase activity	6.36E-04
33	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.29E-04
34	GO:0004190: aspartic-type endopeptidase activity	8.00E-04
35	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	8.29E-04
36	GO:0005457: GDP-fucose transmembrane transporter activity	8.29E-04
37	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	8.29E-04
38	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.18E-03
39	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.18E-03
40	GO:0004792: thiosulfate sulfurtransferase activity	1.18E-03
41	GO:0005515: protein binding	1.35E-03
42	GO:0019199: transmembrane receptor protein kinase activity	1.57E-03
43	GO:0004930: G-protein coupled receptor activity	1.57E-03
44	GO:0008641: small protein activating enzyme activity	2.01E-03
45	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	2.01E-03
46	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.01E-03
47	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.01E-03
48	GO:0045431: flavonol synthase activity	2.01E-03
49	GO:0004656: procollagen-proline 4-dioxygenase activity	2.97E-03
50	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.04E-03
51	GO:0042162: telomeric DNA binding	3.50E-03
52	GO:0003872: 6-phosphofructokinase activity	3.50E-03
53	GO:0008235: metalloexopeptidase activity	3.50E-03
54	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.65E-03
55	GO:0003843: 1,3-beta-D-glucan synthase activity	4.65E-03
56	GO:0004630: phospholipase D activity	4.65E-03
57	GO:0016207: 4-coumarate-CoA ligase activity	5.27E-03
58	GO:0004003: ATP-dependent DNA helicase activity	5.27E-03
59	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.27E-03
60	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.62E-03
61	GO:0004713: protein tyrosine kinase activity	6.58E-03
62	GO:0005545: 1-phosphatidylinositol binding	6.58E-03
63	GO:0005509: calcium ion binding	7.14E-03
64	GO:0004177: aminopeptidase activity	7.28E-03
65	GO:0000287: magnesium ion binding	7.67E-03
66	GO:0046872: metal ion binding	9.06E-03
67	GO:0008061: chitin binding	1.03E-02
68	GO:0031625: ubiquitin protein ligase binding	1.08E-02
69	GO:0004725: protein tyrosine phosphatase activity	1.11E-02
70	GO:0031418: L-ascorbic acid binding	1.20E-02
71	GO:0005385: zinc ion transmembrane transporter activity	1.20E-02
72	GO:0003954: NADH dehydrogenase activity	1.20E-02
73	GO:0043130: ubiquitin binding	1.20E-02
74	GO:0004722: protein serine/threonine phosphatase activity	1.46E-02
75	GO:0008514: organic anion transmembrane transporter activity	1.65E-02
76	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.80E-02
77	GO:0005451: monovalent cation:proton antiporter activity	1.85E-02
78	GO:0001085: RNA polymerase II transcription factor binding	1.95E-02
79	GO:0046873: metal ion transmembrane transporter activity	1.95E-02
80	GO:0030276: clathrin binding	1.95E-02
81	GO:0015299: solute:proton antiporter activity	2.05E-02
82	GO:0015385: sodium:proton antiporter activity	2.48E-02
83	GO:0003684: damaged DNA binding	2.60E-02
84	GO:0005506: iron ion binding	2.63E-02
85	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.19E-02
86	GO:0004806: triglyceride lipase activity	3.31E-02
87	GO:0004721: phosphoprotein phosphatase activity	3.31E-02
88	GO:0030247: polysaccharide binding	3.31E-02
89	GO:0004683: calmodulin-dependent protein kinase activity	3.31E-02
90	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.31E-02
91	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.56E-02
92	GO:0008168: methyltransferase activity	3.60E-02
93	GO:0005096: GTPase activator activity	3.68E-02
94	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.94E-02
95	GO:0043531: ADP binding	4.10E-02
96	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.48E-02
97	GO:0030246: carbohydrate binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0005886: plasma membrane	5.31E-12
3	GO:0016021: integral component of membrane	6.51E-09
4	GO:0005911: cell-cell junction	2.29E-04
5	GO:0045252: oxoglutarate dehydrogenase complex	2.29E-04
6	GO:0043564: Ku70:Ku80 complex	2.29E-04
7	GO:0031304: intrinsic component of mitochondrial inner membrane	5.10E-04
8	GO:0070062: extracellular exosome	1.18E-03
9	GO:0005737: cytoplasm	1.79E-03
10	GO:0005945: 6-phosphofructokinase complex	2.01E-03
11	GO:0008250: oligosaccharyltransferase complex	2.01E-03
12	GO:0009504: cell plate	2.21E-03
13	GO:0005783: endoplasmic reticulum	3.06E-03
14	GO:0000148: 1,3-beta-D-glucan synthase complex	4.65E-03
15	GO:0000784: nuclear chromosome, telomeric region	4.65E-03
16	GO:0030665: clathrin-coated vesicle membrane	5.91E-03
17	GO:0017119: Golgi transport complex	6.58E-03
18	GO:0030125: clathrin vesicle coat	6.58E-03
19	GO:0009506: plasmodesma	7.57E-03
20	GO:0005794: Golgi apparatus	8.27E-03
21	GO:0043234: protein complex	1.11E-02
22	GO:0010008: endosome membrane	1.20E-02
23	GO:0005905: clathrin-coated pit	1.37E-02
24	GO:0016020: membrane	1.71E-02
25	GO:0030136: clathrin-coated vesicle	1.75E-02
26	GO:0005802: trans-Golgi network	1.91E-02
27	GO:0019898: extrinsic component of membrane	2.16E-02
28	GO:0000145: exocyst	2.37E-02
29	GO:0071944: cell periphery	2.48E-02
30	GO:0005887: integral component of plasma membrane	2.49E-02
31	GO:0005774: vacuolar membrane	2.65E-02
32	GO:0005667: transcription factor complex	3.19E-02
33	GO:0019005: SCF ubiquitin ligase complex	3.56E-02
34	GO:0031902: late endosome membrane	4.76E-02
35	GO:0005789: endoplasmic reticulum membrane	4.97E-02