GO Enrichment Analysis of Co-expressed Genes with
AT3G55630
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009249: protein lipoylation | 0.00E+00 |
| 2 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 3 | GO:0006438: valyl-tRNA aminoacylation | 3.64E-05 |
| 4 | GO:0009767: photosynthetic electron transport chain | 4.65E-05 |
| 5 | GO:0019253: reductive pentose-phosphate cycle | 5.37E-05 |
| 6 | GO:0046482: para-aminobenzoic acid metabolic process | 9.09E-05 |
| 7 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 2.33E-04 |
| 8 | GO:0033014: tetrapyrrole biosynthetic process | 2.33E-04 |
| 9 | GO:2001141: regulation of RNA biosynthetic process | 2.33E-04 |
| 10 | GO:0010239: chloroplast mRNA processing | 2.33E-04 |
| 11 | GO:0009902: chloroplast relocation | 3.14E-04 |
| 12 | GO:0019464: glycine decarboxylation via glycine cleavage system | 3.14E-04 |
| 13 | GO:0010236: plastoquinone biosynthetic process | 4.01E-04 |
| 14 | GO:0009107: lipoate biosynthetic process | 4.01E-04 |
| 15 | GO:1902183: regulation of shoot apical meristem development | 4.01E-04 |
| 16 | GO:0016123: xanthophyll biosynthetic process | 4.01E-04 |
| 17 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 4.92E-04 |
| 18 | GO:0009744: response to sucrose | 6.47E-04 |
| 19 | GO:0016559: peroxisome fission | 7.90E-04 |
| 20 | GO:0008610: lipid biosynthetic process | 7.90E-04 |
| 21 | GO:0010100: negative regulation of photomorphogenesis | 8.97E-04 |
| 22 | GO:0071482: cellular response to light stimulus | 8.97E-04 |
| 23 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 8.97E-04 |
| 24 | GO:0048193: Golgi vesicle transport | 8.97E-04 |
| 25 | GO:2000024: regulation of leaf development | 1.01E-03 |
| 26 | GO:0006783: heme biosynthetic process | 1.01E-03 |
| 27 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.12E-03 |
| 28 | GO:0019684: photosynthesis, light reaction | 1.36E-03 |
| 29 | GO:0006352: DNA-templated transcription, initiation | 1.36E-03 |
| 30 | GO:0009416: response to light stimulus | 1.49E-03 |
| 31 | GO:0045037: protein import into chloroplast stroma | 1.49E-03 |
| 32 | GO:0006006: glucose metabolic process | 1.62E-03 |
| 33 | GO:0007031: peroxisome organization | 1.89E-03 |
| 34 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.18E-03 |
| 35 | GO:0006289: nucleotide-excision repair | 2.18E-03 |
| 36 | GO:0009793: embryo development ending in seed dormancy | 2.18E-03 |
| 37 | GO:0006418: tRNA aminoacylation for protein translation | 2.33E-03 |
| 38 | GO:0080092: regulation of pollen tube growth | 2.64E-03 |
| 39 | GO:0010082: regulation of root meristem growth | 2.80E-03 |
| 40 | GO:0016117: carotenoid biosynthetic process | 3.13E-03 |
| 41 | GO:0008360: regulation of cell shape | 3.47E-03 |
| 42 | GO:0010183: pollen tube guidance | 3.82E-03 |
| 43 | GO:1901657: glycosyl compound metabolic process | 4.37E-03 |
| 44 | GO:0009407: toxin catabolic process | 6.61E-03 |
| 45 | GO:0009853: photorespiration | 7.28E-03 |
| 46 | GO:0009735: response to cytokinin | 9.23E-03 |
| 47 | GO:0009636: response to toxic substance | 9.42E-03 |
| 48 | GO:0009846: pollen germination | 1.02E-02 |
| 49 | GO:0006096: glycolytic process | 1.20E-02 |
| 50 | GO:0009790: embryo development | 1.80E-02 |
| 51 | GO:0009451: RNA modification | 2.06E-02 |
| 52 | GO:0008380: RNA splicing | 2.29E-02 |
| 53 | GO:0009658: chloroplast organization | 2.76E-02 |
| 54 | GO:0009409: response to cold | 2.78E-02 |
| 55 | GO:0009860: pollen tube growth | 2.91E-02 |
| 56 | GO:0006810: transport | 3.02E-02 |
| 57 | GO:0046686: response to cadmium ion | 3.20E-02 |
| 58 | GO:0080167: response to karrikin | 3.22E-02 |
| 59 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.30E-02 |
| 60 | GO:0045454: cell redox homeostasis | 3.66E-02 |
| 61 | GO:0009751: response to salicylic acid | 4.20E-02 |
| 62 | GO:0006629: lipid metabolic process | 4.25E-02 |
| 63 | GO:0008152: metabolic process | 4.55E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 2 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 3 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 6.19E-06 |
| 4 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 3.64E-05 |
| 5 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 3.64E-05 |
| 6 | GO:0004832: valine-tRNA ligase activity | 3.64E-05 |
| 7 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 3.64E-05 |
| 8 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 3.64E-05 |
| 9 | GO:0004325: ferrochelatase activity | 3.64E-05 |
| 10 | GO:0010291: carotene beta-ring hydroxylase activity | 9.09E-05 |
| 11 | GO:0017118: lipoyltransferase activity | 9.09E-05 |
| 12 | GO:0016415: octanoyltransferase activity | 9.09E-05 |
| 13 | GO:0047215: indole-3-acetate beta-glucosyltransferase activity | 9.09E-05 |
| 14 | GO:0080002: UDP-glucose:4-aminobenzoate acylglucosyltransferase activity | 9.09E-05 |
| 15 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 9.09E-05 |
| 16 | GO:0004751: ribose-5-phosphate isomerase activity | 1.58E-04 |
| 17 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.58E-04 |
| 18 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 2.33E-04 |
| 19 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 2.33E-04 |
| 20 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 3.14E-04 |
| 21 | GO:0001053: plastid sigma factor activity | 3.14E-04 |
| 22 | GO:0016987: sigma factor activity | 3.14E-04 |
| 23 | GO:0010294: abscisic acid glucosyltransferase activity | 4.01E-04 |
| 24 | GO:0008374: O-acyltransferase activity | 4.01E-04 |
| 25 | GO:0080030: methyl indole-3-acetate esterase activity | 4.92E-04 |
| 26 | GO:0043295: glutathione binding | 6.87E-04 |
| 27 | GO:0003843: 1,3-beta-D-glucan synthase activity | 8.97E-04 |
| 28 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.36E-03 |
| 29 | GO:0031072: heat shock protein binding | 1.62E-03 |
| 30 | GO:0005528: FK506 binding | 2.18E-03 |
| 31 | GO:0035251: UDP-glucosyltransferase activity | 2.48E-03 |
| 32 | GO:0003756: protein disulfide isomerase activity | 2.96E-03 |
| 33 | GO:0004812: aminoacyl-tRNA ligase activity | 3.13E-03 |
| 34 | GO:0004518: nuclease activity | 4.19E-03 |
| 35 | GO:0016597: amino acid binding | 4.95E-03 |
| 36 | GO:0102483: scopolin beta-glucosidase activity | 5.76E-03 |
| 37 | GO:0050897: cobalt ion binding | 6.83E-03 |
| 38 | GO:0008422: beta-glucosidase activity | 7.74E-03 |
| 39 | GO:0050661: NADP binding | 7.97E-03 |
| 40 | GO:0004364: glutathione transferase activity | 8.44E-03 |
| 41 | GO:0005198: structural molecule activity | 9.42E-03 |
| 42 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.68E-03 |
| 43 | GO:0051287: NAD binding | 9.93E-03 |
| 44 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.07E-02 |
| 45 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.29E-02 |
| 46 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.29E-02 |
| 47 | GO:0051082: unfolded protein binding | 1.37E-02 |
| 48 | GO:0016746: transferase activity, transferring acyl groups | 1.40E-02 |
| 49 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.64E-02 |
| 50 | GO:0008565: protein transporter activity | 1.83E-02 |
| 51 | GO:0005509: calcium ion binding | 1.89E-02 |
| 52 | GO:0008194: UDP-glycosyltransferase activity | 2.19E-02 |
| 53 | GO:0042802: identical protein binding | 2.40E-02 |
| 54 | GO:0046982: protein heterodimerization activity | 2.72E-02 |
| 55 | GO:0016788: hydrolase activity, acting on ester bonds | 2.80E-02 |
| 56 | GO:0050660: flavin adenine dinucleotide binding | 3.06E-02 |
| 57 | GO:0016787: hydrolase activity | 4.38E-02 |
| 58 | GO:0004519: endonuclease activity | 4.51E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.15E-11 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.48E-08 |
| 4 | GO:0031969: chloroplast membrane | 3.55E-05 |
| 5 | GO:0030095: chloroplast photosystem II | 5.37E-05 |
| 6 | GO:0009941: chloroplast envelope | 5.61E-05 |
| 7 | GO:0009654: photosystem II oxygen evolving complex | 8.79E-05 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.21E-04 |
| 9 | GO:0019898: extrinsic component of membrane | 1.97E-04 |
| 10 | GO:0005960: glycine cleavage complex | 2.33E-04 |
| 11 | GO:0010319: stromule | 2.74E-04 |
| 12 | GO:0055035: plastid thylakoid membrane | 4.01E-04 |
| 13 | GO:0009840: chloroplastic endopeptidase Clp complex | 5.88E-04 |
| 14 | GO:0009570: chloroplast stroma | 6.57E-04 |
| 15 | GO:0005779: integral component of peroxisomal membrane | 8.97E-04 |
| 16 | GO:0000148: 1,3-beta-D-glucan synthase complex | 8.97E-04 |
| 17 | GO:0048471: perinuclear region of cytoplasm | 1.36E-03 |
| 18 | GO:0005623: cell | 1.53E-03 |
| 19 | GO:0009508: plastid chromosome | 1.62E-03 |
| 20 | GO:0009534: chloroplast thylakoid | 1.89E-03 |
| 21 | GO:0005778: peroxisomal membrane | 4.75E-03 |
| 22 | GO:0009295: nucleoid | 4.75E-03 |
| 23 | GO:0009707: chloroplast outer membrane | 6.18E-03 |
| 24 | GO:0090406: pollen tube | 8.68E-03 |
| 25 | GO:0005856: cytoskeleton | 9.42E-03 |
| 26 | GO:0009579: thylakoid | 1.21E-02 |
| 27 | GO:0005747: mitochondrial respiratory chain complex I | 1.23E-02 |
| 28 | GO:0009706: chloroplast inner membrane | 1.37E-02 |
| 29 | GO:0009524: phragmoplast | 1.67E-02 |
| 30 | GO:0005759: mitochondrial matrix | 1.89E-02 |
| 31 | GO:0043231: intracellular membrane-bounded organelle | 4.55E-02 |