GO Enrichment Analysis of Co-expressed Genes with
AT3G55250
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 5 | GO:0018026: peptidyl-lysine monomethylation | 3.44E-07 |
| 6 | GO:0010027: thylakoid membrane organization | 1.22E-06 |
| 7 | GO:0010207: photosystem II assembly | 3.14E-06 |
| 8 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.54E-05 |
| 9 | GO:0034337: RNA folding | 7.90E-05 |
| 10 | GO:1904966: positive regulation of vitamin E biosynthetic process | 7.90E-05 |
| 11 | GO:1904964: positive regulation of phytol biosynthetic process | 7.90E-05 |
| 12 | GO:0043686: co-translational protein modification | 7.90E-05 |
| 13 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.89E-04 |
| 14 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.89E-04 |
| 15 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.89E-04 |
| 16 | GO:0071457: cellular response to ozone | 1.89E-04 |
| 17 | GO:0035304: regulation of protein dephosphorylation | 1.89E-04 |
| 18 | GO:1900871: chloroplast mRNA modification | 1.89E-04 |
| 19 | GO:0015979: photosynthesis | 2.78E-04 |
| 20 | GO:0090391: granum assembly | 3.17E-04 |
| 21 | GO:0071484: cellular response to light intensity | 4.58E-04 |
| 22 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 4.58E-04 |
| 23 | GO:0071486: cellular response to high light intensity | 6.09E-04 |
| 24 | GO:0006661: phosphatidylinositol biosynthetic process | 6.09E-04 |
| 25 | GO:0009765: photosynthesis, light harvesting | 6.09E-04 |
| 26 | GO:0006109: regulation of carbohydrate metabolic process | 6.09E-04 |
| 27 | GO:0071493: cellular response to UV-B | 7.72E-04 |
| 28 | GO:0031365: N-terminal protein amino acid modification | 7.72E-04 |
| 29 | GO:0042549: photosystem II stabilization | 9.42E-04 |
| 30 | GO:0000470: maturation of LSU-rRNA | 9.42E-04 |
| 31 | GO:0042793: transcription from plastid promoter | 9.42E-04 |
| 32 | GO:1901259: chloroplast rRNA processing | 1.12E-03 |
| 33 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.12E-03 |
| 34 | GO:0017148: negative regulation of translation | 1.12E-03 |
| 35 | GO:0010196: nonphotochemical quenching | 1.31E-03 |
| 36 | GO:1900057: positive regulation of leaf senescence | 1.31E-03 |
| 37 | GO:0006400: tRNA modification | 1.31E-03 |
| 38 | GO:0015693: magnesium ion transport | 1.31E-03 |
| 39 | GO:0048564: photosystem I assembly | 1.51E-03 |
| 40 | GO:0009642: response to light intensity | 1.51E-03 |
| 41 | GO:0019430: removal of superoxide radicals | 1.72E-03 |
| 42 | GO:0032544: plastid translation | 1.72E-03 |
| 43 | GO:0010206: photosystem II repair | 1.95E-03 |
| 44 | GO:0010205: photoinhibition | 2.18E-03 |
| 45 | GO:0055062: phosphate ion homeostasis | 2.41E-03 |
| 46 | GO:0009773: photosynthetic electron transport in photosystem I | 2.66E-03 |
| 47 | GO:0019684: photosynthesis, light reaction | 2.66E-03 |
| 48 | GO:0043085: positive regulation of catalytic activity | 2.66E-03 |
| 49 | GO:1903507: negative regulation of nucleic acid-templated transcription | 2.66E-03 |
| 50 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.92E-03 |
| 51 | GO:0008152: metabolic process | 2.95E-03 |
| 52 | GO:0010628: positive regulation of gene expression | 3.18E-03 |
| 53 | GO:0006412: translation | 3.26E-03 |
| 54 | GO:0009695: jasmonic acid biosynthetic process | 4.61E-03 |
| 55 | GO:0031408: oxylipin biosynthetic process | 4.92E-03 |
| 56 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 5.24E-03 |
| 57 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.56E-03 |
| 58 | GO:0009561: megagametogenesis | 5.89E-03 |
| 59 | GO:0080022: primary root development | 6.57E-03 |
| 60 | GO:0000413: protein peptidyl-prolyl isomerization | 6.57E-03 |
| 61 | GO:0071472: cellular response to salt stress | 6.92E-03 |
| 62 | GO:0006662: glycerol ether metabolic process | 6.92E-03 |
| 63 | GO:0008654: phospholipid biosynthetic process | 7.64E-03 |
| 64 | GO:0009658: chloroplast organization | 8.55E-03 |
| 65 | GO:0009828: plant-type cell wall loosening | 9.16E-03 |
| 66 | GO:0015995: chlorophyll biosynthetic process | 1.16E-02 |
| 67 | GO:0009817: defense response to fungus, incompatible interaction | 1.25E-02 |
| 68 | GO:0018298: protein-chromophore linkage | 1.25E-02 |
| 69 | GO:0006979: response to oxidative stress | 1.33E-02 |
| 70 | GO:0034599: cellular response to oxidative stress | 1.52E-02 |
| 71 | GO:0031347: regulation of defense response | 2.02E-02 |
| 72 | GO:0009664: plant-type cell wall organization | 2.08E-02 |
| 73 | GO:0006364: rRNA processing | 2.19E-02 |
| 74 | GO:0043086: negative regulation of catalytic activity | 2.46E-02 |
| 75 | GO:0009735: response to cytokinin | 2.55E-02 |
| 76 | GO:0055085: transmembrane transport | 3.54E-02 |
| 77 | GO:0006457: protein folding | 3.61E-02 |
| 78 | GO:0042744: hydrogen peroxide catabolic process | 3.62E-02 |
| 79 | GO:0009790: embryo development | 3.68E-02 |
| 80 | GO:0008380: RNA splicing | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 2 | GO:0043023: ribosomal large subunit binding | 3.15E-06 |
| 3 | GO:0016279: protein-lysine N-methyltransferase activity | 6.01E-06 |
| 4 | GO:0050139: nicotinate-N-glucosyltransferase activity | 7.90E-05 |
| 5 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 7.90E-05 |
| 6 | GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity | 7.90E-05 |
| 7 | GO:0017169: CDP-alcohol phosphatidyltransferase activity | 7.90E-05 |
| 8 | GO:0010242: oxygen evolving activity | 7.90E-05 |
| 9 | GO:0042586: peptide deformylase activity | 7.90E-05 |
| 10 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 7.90E-05 |
| 11 | GO:0004321: fatty-acyl-CoA synthase activity | 7.90E-05 |
| 12 | GO:0005080: protein kinase C binding | 7.90E-05 |
| 13 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 7.90E-05 |
| 14 | GO:0031072: heat shock protein binding | 1.45E-04 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.83E-04 |
| 16 | GO:0000774: adenyl-nucleotide exchange factor activity | 1.89E-04 |
| 17 | GO:0005528: FK506 binding | 2.34E-04 |
| 18 | GO:0004751: ribose-5-phosphate isomerase activity | 3.17E-04 |
| 19 | GO:0051082: unfolded protein binding | 3.57E-04 |
| 20 | GO:0016851: magnesium chelatase activity | 4.58E-04 |
| 21 | GO:0019843: rRNA binding | 4.76E-04 |
| 22 | GO:0004045: aminoacyl-tRNA hydrolase activity | 6.09E-04 |
| 23 | GO:0043495: protein anchor | 6.09E-04 |
| 24 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 6.09E-04 |
| 25 | GO:0004784: superoxide dismutase activity | 9.42E-04 |
| 26 | GO:0042578: phosphoric ester hydrolase activity | 9.42E-04 |
| 27 | GO:0019899: enzyme binding | 1.31E-03 |
| 28 | GO:0043022: ribosome binding | 1.51E-03 |
| 29 | GO:0016207: 4-coumarate-CoA ligase activity | 1.95E-03 |
| 30 | GO:0008047: enzyme activator activity | 2.41E-03 |
| 31 | GO:0015095: magnesium ion transmembrane transporter activity | 3.18E-03 |
| 32 | GO:0008266: poly(U) RNA binding | 3.45E-03 |
| 33 | GO:0004857: enzyme inhibitor activity | 4.31E-03 |
| 34 | GO:0003714: transcription corepressor activity | 4.31E-03 |
| 35 | GO:0051087: chaperone binding | 4.61E-03 |
| 36 | GO:0043424: protein histidine kinase binding | 4.61E-03 |
| 37 | GO:0022891: substrate-specific transmembrane transporter activity | 5.56E-03 |
| 38 | GO:0003756: protein disulfide isomerase activity | 5.89E-03 |
| 39 | GO:0047134: protein-disulfide reductase activity | 6.22E-03 |
| 40 | GO:0042802: identical protein binding | 7.02E-03 |
| 41 | GO:0004791: thioredoxin-disulfide reductase activity | 7.28E-03 |
| 42 | GO:0005507: copper ion binding | 8.44E-03 |
| 43 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.77E-03 |
| 44 | GO:0016787: hydrolase activity | 9.17E-03 |
| 45 | GO:0005525: GTP binding | 1.01E-02 |
| 46 | GO:0016168: chlorophyll binding | 1.08E-02 |
| 47 | GO:0005509: calcium ion binding | 1.19E-02 |
| 48 | GO:0030145: manganese ion binding | 1.38E-02 |
| 49 | GO:0003746: translation elongation factor activity | 1.48E-02 |
| 50 | GO:0003993: acid phosphatase activity | 1.52E-02 |
| 51 | GO:0005198: structural molecule activity | 1.92E-02 |
| 52 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.63E-02 |
| 53 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.63E-02 |
| 54 | GO:0016874: ligase activity | 2.69E-02 |
| 55 | GO:0015035: protein disulfide oxidoreductase activity | 2.87E-02 |
| 56 | GO:0016746: transferase activity, transferring acyl groups | 2.87E-02 |
| 57 | GO:0003735: structural constituent of ribosome | 3.14E-02 |
| 58 | GO:0008194: UDP-glycosyltransferase activity | 4.49E-02 |
| 59 | GO:0003743: translation initiation factor activity | 4.63E-02 |
| 60 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.12E-34 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 2.42E-17 |
| 3 | GO:0009534: chloroplast thylakoid | 6.08E-16 |
| 4 | GO:0009570: chloroplast stroma | 8.19E-16 |
| 5 | GO:0009941: chloroplast envelope | 5.52E-10 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.27E-09 |
| 7 | GO:0009579: thylakoid | 7.69E-09 |
| 8 | GO:0031977: thylakoid lumen | 1.29E-07 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 6.72E-06 |
| 10 | GO:0019898: extrinsic component of membrane | 2.35E-05 |
| 11 | GO:0009515: granal stacked thylakoid | 7.90E-05 |
| 12 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.89E-04 |
| 13 | GO:0031969: chloroplast membrane | 2.24E-04 |
| 14 | GO:0010007: magnesium chelatase complex | 3.17E-04 |
| 15 | GO:0010287: plastoglobule | 4.45E-04 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 1.31E-03 |
| 17 | GO:0008180: COP9 signalosome | 1.95E-03 |
| 18 | GO:0032040: small-subunit processome | 2.92E-03 |
| 19 | GO:0005840: ribosome | 3.10E-03 |
| 20 | GO:0009508: plastid chromosome | 3.18E-03 |
| 21 | GO:0030095: chloroplast photosystem II | 3.45E-03 |
| 22 | GO:0000312: plastid small ribosomal subunit | 3.45E-03 |
| 23 | GO:0042651: thylakoid membrane | 4.61E-03 |
| 24 | GO:0009523: photosystem II | 7.64E-03 |
| 25 | GO:0009295: nucleoid | 9.56E-03 |
| 26 | GO:0030529: intracellular ribonucleoprotein complex | 1.04E-02 |
| 27 | GO:0019005: SCF ubiquitin ligase complex | 1.25E-02 |
| 28 | GO:0000502: proteasome complex | 2.19E-02 |
| 29 | GO:0005777: peroxisome | 3.20E-02 |
| 30 | GO:0005623: cell | 3.36E-02 |
| 31 | GO:0005759: mitochondrial matrix | 3.88E-02 |