GO Enrichment Analysis of Co-expressed Genes with
AT3G55005
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 3 | GO:0099131: ATP hydrolysis coupled ion transmembrane transport | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0006518: peptide metabolic process | 1.03E-06 |
| 9 | GO:0015979: photosynthesis | 1.75E-05 |
| 10 | GO:0032544: plastid translation | 4.07E-05 |
| 11 | GO:0071482: cellular response to light stimulus | 4.07E-05 |
| 12 | GO:0009657: plastid organization | 4.07E-05 |
| 13 | GO:0043489: RNA stabilization | 6.91E-05 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 6.91E-05 |
| 15 | GO:1904964: positive regulation of phytol biosynthetic process | 6.91E-05 |
| 16 | GO:0071588: hydrogen peroxide mediated signaling pathway | 6.91E-05 |
| 17 | GO:0006352: DNA-templated transcription, initiation | 8.80E-05 |
| 18 | GO:0009735: response to cytokinin | 9.33E-05 |
| 19 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.66E-04 |
| 20 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 4.06E-04 |
| 21 | GO:0055070: copper ion homeostasis | 4.06E-04 |
| 22 | GO:2001141: regulation of RNA biosynthetic process | 4.06E-04 |
| 23 | GO:0071483: cellular response to blue light | 5.42E-04 |
| 24 | GO:0044206: UMP salvage | 5.42E-04 |
| 25 | GO:0006412: translation | 6.26E-04 |
| 26 | GO:0000304: response to singlet oxygen | 6.87E-04 |
| 27 | GO:0035434: copper ion transmembrane transport | 6.87E-04 |
| 28 | GO:0006461: protein complex assembly | 6.87E-04 |
| 29 | GO:0043097: pyrimidine nucleoside salvage | 6.87E-04 |
| 30 | GO:0015995: chlorophyll biosynthetic process | 8.10E-04 |
| 31 | GO:0010190: cytochrome b6f complex assembly | 8.40E-04 |
| 32 | GO:0042549: photosystem II stabilization | 8.40E-04 |
| 33 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 8.40E-04 |
| 34 | GO:0000470: maturation of LSU-rRNA | 8.40E-04 |
| 35 | GO:0006206: pyrimidine nucleobase metabolic process | 8.40E-04 |
| 36 | GO:0018298: protein-chromophore linkage | 8.92E-04 |
| 37 | GO:0009658: chloroplast organization | 9.78E-04 |
| 38 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.99E-04 |
| 39 | GO:0030488: tRNA methylation | 9.99E-04 |
| 40 | GO:0010019: chloroplast-nucleus signaling pathway | 9.99E-04 |
| 41 | GO:0009631: cold acclimation | 1.02E-03 |
| 42 | GO:0009637: response to blue light | 1.12E-03 |
| 43 | GO:0006400: tRNA modification | 1.17E-03 |
| 44 | GO:0010196: nonphotochemical quenching | 1.17E-03 |
| 45 | GO:0030001: metal ion transport | 1.26E-03 |
| 46 | GO:0010114: response to red light | 1.42E-03 |
| 47 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.73E-03 |
| 48 | GO:0006098: pentose-phosphate shunt | 1.73E-03 |
| 49 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.93E-03 |
| 50 | GO:0006535: cysteine biosynthetic process from serine | 2.14E-03 |
| 51 | GO:0009073: aromatic amino acid family biosynthetic process | 2.36E-03 |
| 52 | GO:0009773: photosynthetic electron transport in photosystem I | 2.36E-03 |
| 53 | GO:0006415: translational termination | 2.36E-03 |
| 54 | GO:0006006: glucose metabolic process | 2.82E-03 |
| 55 | GO:0006094: gluconeogenesis | 2.82E-03 |
| 56 | GO:0009767: photosynthetic electron transport chain | 2.82E-03 |
| 57 | GO:0010143: cutin biosynthetic process | 3.06E-03 |
| 58 | GO:0090351: seedling development | 3.30E-03 |
| 59 | GO:0010025: wax biosynthetic process | 3.56E-03 |
| 60 | GO:0019344: cysteine biosynthetic process | 3.81E-03 |
| 61 | GO:0009116: nucleoside metabolic process | 3.81E-03 |
| 62 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.08E-03 |
| 63 | GO:0006418: tRNA aminoacylation for protein translation | 4.08E-03 |
| 64 | GO:0031408: oxylipin biosynthetic process | 4.35E-03 |
| 65 | GO:0042335: cuticle development | 5.80E-03 |
| 66 | GO:0008654: phospholipid biosynthetic process | 6.74E-03 |
| 67 | GO:0000302: response to reactive oxygen species | 7.07E-03 |
| 68 | GO:0032502: developmental process | 7.40E-03 |
| 69 | GO:0001666: response to hypoxia | 9.13E-03 |
| 70 | GO:0010027: thylakoid membrane organization | 9.13E-03 |
| 71 | GO:0048481: plant ovule development | 1.10E-02 |
| 72 | GO:0009817: defense response to fungus, incompatible interaction | 1.10E-02 |
| 73 | GO:0009407: toxin catabolic process | 1.18E-02 |
| 74 | GO:0010218: response to far red light | 1.18E-02 |
| 75 | GO:0045087: innate immune response | 1.30E-02 |
| 76 | GO:0034599: cellular response to oxidative stress | 1.34E-02 |
| 77 | GO:0006397: mRNA processing | 1.37E-02 |
| 78 | GO:0008152: metabolic process | 1.44E-02 |
| 79 | GO:0009636: response to toxic substance | 1.69E-02 |
| 80 | GO:0006855: drug transmembrane transport | 1.74E-02 |
| 81 | GO:0006096: glycolytic process | 2.17E-02 |
| 82 | GO:0006396: RNA processing | 2.52E-02 |
| 83 | GO:0042744: hydrogen peroxide catabolic process | 3.18E-02 |
| 84 | GO:0009790: embryo development | 3.24E-02 |
| 85 | GO:0016036: cellular response to phosphate starvation | 3.47E-02 |
| 86 | GO:0040008: regulation of growth | 3.53E-02 |
| 87 | GO:0009451: RNA modification | 3.71E-02 |
| 88 | GO:0008380: RNA splicing | 4.14E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 2 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0019843: rRNA binding | 1.06E-06 |
| 4 | GO:0001053: plastid sigma factor activity | 4.77E-06 |
| 5 | GO:0016987: sigma factor activity | 4.77E-06 |
| 6 | GO:0008266: poly(U) RNA binding | 1.36E-04 |
| 7 | GO:0016630: protochlorophyllide reductase activity | 1.66E-04 |
| 8 | GO:0050017: L-3-cyanoalanine synthase activity | 1.66E-04 |
| 9 | GO:0004751: ribose-5-phosphate isomerase activity | 2.81E-04 |
| 10 | GO:0030267: glyoxylate reductase (NADP) activity | 2.81E-04 |
| 11 | GO:0016531: copper chaperone activity | 2.81E-04 |
| 12 | GO:0019829: cation-transporting ATPase activity | 2.81E-04 |
| 13 | GO:0002161: aminoacyl-tRNA editing activity | 2.81E-04 |
| 14 | GO:0016149: translation release factor activity, codon specific | 4.06E-04 |
| 15 | GO:0043023: ribosomal large subunit binding | 4.06E-04 |
| 16 | GO:0004845: uracil phosphoribosyltransferase activity | 5.42E-04 |
| 17 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 5.42E-04 |
| 18 | GO:0004045: aminoacyl-tRNA hydrolase activity | 5.42E-04 |
| 19 | GO:0043495: protein anchor | 5.42E-04 |
| 20 | GO:0003959: NADPH dehydrogenase activity | 6.87E-04 |
| 21 | GO:0016168: chlorophyll binding | 7.30E-04 |
| 22 | GO:0016688: L-ascorbate peroxidase activity | 8.40E-04 |
| 23 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 8.40E-04 |
| 24 | GO:0004332: fructose-bisphosphate aldolase activity | 8.40E-04 |
| 25 | GO:0004130: cytochrome-c peroxidase activity | 8.40E-04 |
| 26 | GO:0004222: metalloendopeptidase activity | 9.79E-04 |
| 27 | GO:0004849: uridine kinase activity | 9.99E-04 |
| 28 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 9.99E-04 |
| 29 | GO:0004124: cysteine synthase activity | 9.99E-04 |
| 30 | GO:0019899: enzyme binding | 1.17E-03 |
| 31 | GO:0004033: aldo-keto reductase (NADP) activity | 1.34E-03 |
| 32 | GO:0003735: structural constituent of ribosome | 1.47E-03 |
| 33 | GO:0005375: copper ion transmembrane transporter activity | 1.53E-03 |
| 34 | GO:0003747: translation release factor activity | 1.73E-03 |
| 35 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.90E-03 |
| 36 | GO:0000049: tRNA binding | 2.58E-03 |
| 37 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 2.82E-03 |
| 38 | GO:0031409: pigment binding | 3.56E-03 |
| 39 | GO:0051536: iron-sulfur cluster binding | 3.81E-03 |
| 40 | GO:0005528: FK506 binding | 3.81E-03 |
| 41 | GO:0022891: substrate-specific transmembrane transporter activity | 4.91E-03 |
| 42 | GO:0004812: aminoacyl-tRNA ligase activity | 5.50E-03 |
| 43 | GO:0016740: transferase activity | 5.51E-03 |
| 44 | GO:0005525: GTP binding | 8.05E-03 |
| 45 | GO:0016791: phosphatase activity | 8.08E-03 |
| 46 | GO:0004871: signal transducer activity | 1.11E-02 |
| 47 | GO:0015238: drug transmembrane transporter activity | 1.14E-02 |
| 48 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.22E-02 |
| 49 | GO:0003746: translation elongation factor activity | 1.30E-02 |
| 50 | GO:0050661: NADP binding | 1.43E-02 |
| 51 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.43E-02 |
| 52 | GO:0004364: glutathione transferase activity | 1.51E-02 |
| 53 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.74E-02 |
| 54 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.22E-02 |
| 55 | GO:0016746: transferase activity, transferring acyl groups | 2.52E-02 |
| 56 | GO:0016787: hydrolase activity | 2.74E-02 |
| 57 | GO:0030170: pyridoxal phosphate binding | 3.12E-02 |
| 58 | GO:0015297: antiporter activity | 3.53E-02 |
| 59 | GO:0046872: metal ion binding | 4.00E-02 |
| 60 | GO:0042802: identical protein binding | 4.32E-02 |
| 61 | GO:0003723: RNA binding | 4.74E-02 |
| 62 | GO:0000287: magnesium ion binding | 4.91E-02 |
| 63 | GO:0004601: peroxidase activity | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.12E-31 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 4.37E-18 |
| 3 | GO:0009570: chloroplast stroma | 2.23E-15 |
| 4 | GO:0009941: chloroplast envelope | 1.11E-11 |
| 5 | GO:0009579: thylakoid | 1.41E-10 |
| 6 | GO:0009534: chloroplast thylakoid | 1.30E-06 |
| 7 | GO:0031977: thylakoid lumen | 3.68E-06 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.72E-05 |
| 9 | GO:0009547: plastid ribosome | 6.91E-05 |
| 10 | GO:0009536: plastid | 1.12E-04 |
| 11 | GO:0042651: thylakoid membrane | 2.16E-04 |
| 12 | GO:0009523: photosystem II | 4.53E-04 |
| 13 | GO:0030529: intracellular ribonucleoprotein complex | 6.92E-04 |
| 14 | GO:0009533: chloroplast stromal thylakoid | 1.17E-03 |
| 15 | GO:0031969: chloroplast membrane | 1.27E-03 |
| 16 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.73E-03 |
| 17 | GO:0005840: ribosome | 2.35E-03 |
| 18 | GO:0000311: plastid large ribosomal subunit | 2.58E-03 |
| 19 | GO:0016020: membrane | 2.98E-03 |
| 20 | GO:0000312: plastid small ribosomal subunit | 3.06E-03 |
| 21 | GO:0030095: chloroplast photosystem II | 3.06E-03 |
| 22 | GO:0030076: light-harvesting complex | 3.30E-03 |
| 23 | GO:0043234: protein complex | 3.56E-03 |
| 24 | GO:0009654: photosystem II oxygen evolving complex | 4.08E-03 |
| 25 | GO:0046658: anchored component of plasma membrane | 6.11E-03 |
| 26 | GO:0009522: photosystem I | 6.42E-03 |
| 27 | GO:0019898: extrinsic component of membrane | 6.74E-03 |
| 28 | GO:0022625: cytosolic large ribosomal subunit | 9.31E-03 |
| 29 | GO:0015934: large ribosomal subunit | 1.22E-02 |
| 30 | GO:0022626: cytosolic ribosome | 2.23E-02 |
| 31 | GO:0010287: plastoglobule | 2.79E-02 |
| 32 | GO:0022627: cytosolic small ribosomal subunit | 4.45E-02 |