Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54950

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902001: fatty acid transmembrane transport0.00E+00
2GO:0080056: petal vascular tissue pattern formation0.00E+00
3GO:0006858: extracellular transport0.00E+00
4GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
5GO:0080180: 2-methylguanosine metabolic process0.00E+00
6GO:0080057: sepal vascular tissue pattern formation0.00E+00
7GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
8GO:0036258: multivesicular body assembly0.00E+00
9GO:0046109: uridine biosynthetic process0.00E+00
10GO:0007141: male meiosis I0.00E+00
11GO:0048227: plasma membrane to endosome transport0.00E+00
12GO:0006983: ER overload response0.00E+00
13GO:0010793: regulation of mRNA export from nucleus0.00E+00
14GO:0000478: endonucleolytic cleavage involved in rRNA processing0.00E+00
15GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
16GO:0046686: response to cadmium ion7.48E-05
17GO:0006014: D-ribose metabolic process1.15E-04
18GO:1990641: response to iron ion starvation2.72E-04
19GO:0019567: arabinose biosynthetic process2.72E-04
20GO:0006422: aspartyl-tRNA aminoacylation2.72E-04
21GO:0009821: alkaloid biosynthetic process3.90E-04
22GO:0006896: Golgi to vacuole transport5.39E-04
23GO:0043069: negative regulation of programmed cell death5.39E-04
24GO:0055088: lipid homeostasis5.99E-04
25GO:0050684: regulation of mRNA processing5.99E-04
26GO:0015908: fatty acid transport5.99E-04
27GO:0006101: citrate metabolic process5.99E-04
28GO:0043066: negative regulation of apoptotic process5.99E-04
29GO:0042325: regulation of phosphorylation5.99E-04
30GO:0071668: plant-type cell wall assembly5.99E-04
31GO:0019441: tryptophan catabolic process to kynurenine5.99E-04
32GO:0000266: mitochondrial fission7.11E-04
33GO:2000034: regulation of seed maturation9.72E-04
34GO:1900055: regulation of leaf senescence9.72E-04
35GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening9.72E-04
36GO:0032784: regulation of DNA-templated transcription, elongation9.72E-04
37GO:0009225: nucleotide-sugar metabolic process1.01E-03
38GO:0006099: tricarboxylic acid cycle1.04E-03
39GO:2001289: lipid X metabolic process1.39E-03
40GO:0006107: oxaloacetate metabolic process1.39E-03
41GO:0072334: UDP-galactose transmembrane transport1.39E-03
42GO:0009052: pentose-phosphate shunt, non-oxidative branch1.39E-03
43GO:0070676: intralumenal vesicle formation1.39E-03
44GO:0006986: response to unfolded protein1.39E-03
45GO:0000187: activation of MAPK activity1.39E-03
46GO:0010116: positive regulation of abscisic acid biosynthetic process1.39E-03
47GO:0016998: cell wall macromolecule catabolic process1.50E-03
48GO:0030433: ubiquitin-dependent ERAD pathway1.64E-03
49GO:0006012: galactose metabolic process1.79E-03
50GO:0045227: capsule polysaccharide biosynthetic process1.86E-03
51GO:0033320: UDP-D-xylose biosynthetic process1.86E-03
52GO:0033358: UDP-L-arabinose biosynthetic process1.86E-03
53GO:2000038: regulation of stomatal complex development1.86E-03
54GO:0006734: NADH metabolic process1.86E-03
55GO:0006097: glyoxylate cycle2.37E-03
56GO:0006461: protein complex assembly2.37E-03
57GO:0006096: glycolytic process2.44E-03
58GO:0009620: response to fungus2.75E-03
59GO:0019252: starch biosynthetic process2.82E-03
60GO:0048232: male gamete generation2.93E-03
61GO:0042732: D-xylose metabolic process2.93E-03
62GO:0018258: protein O-linked glycosylation via hydroxyproline2.93E-03
63GO:1900425: negative regulation of defense response to bacterium2.93E-03
64GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.93E-03
65GO:0010405: arabinogalactan protein metabolic process2.93E-03
66GO:0006468: protein phosphorylation3.37E-03
67GO:2000037: regulation of stomatal complex patterning3.52E-03
68GO:0048280: vesicle fusion with Golgi apparatus3.52E-03
69GO:0006744: ubiquinone biosynthetic process4.15E-03
70GO:1900056: negative regulation of leaf senescence4.15E-03
71GO:0000338: protein deneddylation4.15E-03
72GO:0042773: ATP synthesis coupled electron transport4.15E-03
73GO:0006400: tRNA modification4.15E-03
74GO:1902074: response to salt4.15E-03
75GO:0045454: cell redox homeostasis4.17E-03
76GO:0009615: response to virus4.36E-03
77GO:0009058: biosynthetic process4.39E-03
78GO:0006102: isocitrate metabolic process4.82E-03
79GO:0016559: peroxisome fission4.82E-03
80GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.82E-03
81GO:1900150: regulation of defense response to fungus4.82E-03
82GO:0006605: protein targeting4.82E-03
83GO:0006972: hyperosmotic response5.52E-03
84GO:0010208: pollen wall assembly5.52E-03
85GO:0015996: chlorophyll catabolic process5.52E-03
86GO:0030968: endoplasmic reticulum unfolded protein response5.52E-03
87GO:0017004: cytochrome complex assembly5.52E-03
88GO:0010150: leaf senescence6.18E-03
89GO:0046685: response to arsenic-containing substance6.25E-03
90GO:0051865: protein autoubiquitination6.25E-03
91GO:0048354: mucilage biosynthetic process involved in seed coat development7.03E-03
92GO:0010629: negative regulation of gene expression7.82E-03
93GO:0051026: chiasma assembly7.82E-03
94GO:0006032: chitin catabolic process7.82E-03
95GO:0016310: phosphorylation8.22E-03
96GO:0000038: very long-chain fatty acid metabolic process8.66E-03
97GO:0006913: nucleocytoplasmic transport8.66E-03
98GO:0030148: sphingolipid biosynthetic process8.66E-03
99GO:0015706: nitrate transport9.52E-03
100GO:0010588: cotyledon vascular tissue pattern formation1.04E-02
101GO:0006807: nitrogen compound metabolic process1.04E-02
102GO:0006626: protein targeting to mitochondrion1.04E-02
103GO:0006108: malate metabolic process1.04E-02
104GO:0010229: inflorescence development1.04E-02
105GO:0009636: response to toxic substance1.05E-02
106GO:0010167: response to nitrate1.23E-02
107GO:0010030: positive regulation of seed germination1.23E-02
108GO:0034976: response to endoplasmic reticulum stress1.33E-02
109GO:0000027: ribosomal large subunit assembly1.43E-02
110GO:2000377: regulation of reactive oxygen species metabolic process1.43E-02
111GO:0006874: cellular calcium ion homeostasis1.53E-02
112GO:0009814: defense response, incompatible interaction1.75E-02
113GO:0007131: reciprocal meiotic recombination1.75E-02
114GO:0080092: regulation of pollen tube growth1.75E-02
115GO:0010227: floral organ abscission1.86E-02
116GO:0042147: retrograde transport, endosome to Golgi2.09E-02
117GO:0010305: leaf vascular tissue pattern formation2.33E-02
118GO:0009646: response to absence of light2.45E-02
119GO:0006623: protein targeting to vacuole2.58E-02
120GO:0010183: pollen tube guidance2.58E-02
121GO:0009749: response to glucose2.58E-02
122GO:0055072: iron ion homeostasis2.58E-02
123GO:0071554: cell wall organization or biogenesis2.71E-02
124GO:0006891: intra-Golgi vesicle-mediated transport2.71E-02
125GO:0006633: fatty acid biosynthetic process2.82E-02
126GO:0009630: gravitropism2.84E-02
127GO:0007264: small GTPase mediated signal transduction2.84E-02
128GO:0040008: regulation of growth2.96E-02
129GO:0010252: auxin homeostasis3.10E-02
130GO:0006310: DNA recombination3.10E-02
131GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.47E-02
132GO:0007166: cell surface receptor signaling pathway3.55E-02
133GO:0042128: nitrate assimilation3.80E-02
134GO:0006888: ER to Golgi vesicle-mediated transport3.95E-02
135GO:0006950: response to stress3.95E-02
136GO:0016311: dephosphorylation4.10E-02
137GO:0030244: cellulose biosynthetic process4.25E-02
138GO:0009832: plant-type cell wall biogenesis4.40E-02
139GO:0009738: abscisic acid-activated signaling pathway4.53E-02
140GO:0009407: toxin catabolic process4.55E-02
141GO:0010043: response to zinc ion4.71E-02
RankGO TermAdjusted P value
1GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
2GO:0070577: lysine-acetylated histone binding0.00E+00
3GO:0050220: prostaglandin-E synthase activity0.00E+00
4GO:0016504: peptidase activator activity0.00E+00
5GO:0016301: kinase activity3.53E-05
6GO:0009055: electron carrier activity6.23E-05
7GO:0005524: ATP binding6.85E-05
8GO:0005496: steroid binding7.90E-05
9GO:0004747: ribokinase activity1.58E-04
10GO:0003978: UDP-glucose 4-epimerase activity1.58E-04
11GO:0008865: fructokinase activity2.62E-04
12GO:0004815: aspartate-tRNA ligase activity2.72E-04
13GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.72E-04
14GO:0019707: protein-cysteine S-acyltransferase activity2.72E-04
15GO:0015245: fatty acid transporter activity2.72E-04
16GO:0004674: protein serine/threonine kinase activity3.29E-04
17GO:0004743: pyruvate kinase activity4.62E-04
18GO:0030955: potassium ion binding4.62E-04
19GO:0016844: strictosidine synthase activity4.62E-04
20GO:0003994: aconitate hydratase activity5.99E-04
21GO:0050736: O-malonyltransferase activity5.99E-04
22GO:0045140: inositol phosphoceramide synthase activity5.99E-04
23GO:0004061: arylformamidase activity5.99E-04
24GO:0043141: ATP-dependent 5'-3' DNA helicase activity5.99E-04
25GO:0015036: disulfide oxidoreductase activity5.99E-04
26GO:0004634: phosphopyruvate hydratase activity5.99E-04
27GO:0052692: raffinose alpha-galactosidase activity9.72E-04
28GO:0005093: Rab GDP-dissociation inhibitor activity9.72E-04
29GO:0004557: alpha-galactosidase activity9.72E-04
30GO:0004751: ribose-5-phosphate isomerase activity9.72E-04
31GO:0016805: dipeptidase activity9.72E-04
32GO:0003954: NADH dehydrogenase activity1.24E-03
33GO:0070628: proteasome binding1.86E-03
34GO:0050373: UDP-arabinose 4-epimerase activity1.86E-03
35GO:0000287: magnesium ion binding2.21E-03
36GO:0005459: UDP-galactose transmembrane transporter activity2.37E-03
37GO:0004040: amidase activity2.37E-03
38GO:0048040: UDP-glucuronate decarboxylase activity2.93E-03
39GO:1990714: hydroxyproline O-galactosyltransferase activity2.93E-03
40GO:0047714: galactolipase activity2.93E-03
41GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.93E-03
42GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.93E-03
43GO:0036402: proteasome-activating ATPase activity2.93E-03
44GO:0016615: malate dehydrogenase activity2.93E-03
45GO:0015035: protein disulfide oxidoreductase activity3.20E-03
46GO:0070403: NAD+ binding3.52E-03
47GO:0102391: decanoate--CoA ligase activity3.52E-03
48GO:0030060: L-malate dehydrogenase activity3.52E-03
49GO:0004656: procollagen-proline 4-dioxygenase activity3.52E-03
50GO:0008235: metalloexopeptidase activity4.15E-03
51GO:0008121: ubiquinol-cytochrome-c reductase activity4.15E-03
52GO:0004467: long-chain fatty acid-CoA ligase activity4.15E-03
53GO:0052747: sinapyl alcohol dehydrogenase activity4.82E-03
54GO:0004708: MAP kinase kinase activity4.82E-03
55GO:0004714: transmembrane receptor protein tyrosine kinase activity4.82E-03
56GO:0008970: phosphatidylcholine 1-acylhydrolase activity5.52E-03
57GO:0005096: GTPase activator activity5.97E-03
58GO:0071949: FAD binding6.25E-03
59GO:0003678: DNA helicase activity6.25E-03
60GO:0015112: nitrate transmembrane transporter activity7.03E-03
61GO:0045309: protein phosphorylated amino acid binding7.03E-03
62GO:0004568: chitinase activity7.82E-03
63GO:0051539: 4 iron, 4 sulfur cluster binding8.22E-03
64GO:0008794: arsenate reductase (glutaredoxin) activity8.66E-03
65GO:0019904: protein domain specific binding8.66E-03
66GO:0004177: aminopeptidase activity8.66E-03
67GO:0008378: galactosyltransferase activity9.52E-03
68GO:0045551: cinnamyl-alcohol dehydrogenase activity9.52E-03
69GO:0051537: 2 iron, 2 sulfur cluster binding1.01E-02
70GO:0019888: protein phosphatase regulator activity1.04E-02
71GO:0000175: 3'-5'-exoribonuclease activity1.04E-02
72GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.04E-02
73GO:0004022: alcohol dehydrogenase (NAD) activity1.04E-02
74GO:0016887: ATPase activity1.11E-02
75GO:0004535: poly(A)-specific ribonuclease activity1.13E-02
76GO:0017025: TBP-class protein binding1.23E-02
77GO:0005217: intracellular ligand-gated ion channel activity1.23E-02
78GO:0004970: ionotropic glutamate receptor activity1.23E-02
79GO:0051536: iron-sulfur cluster binding1.43E-02
80GO:0031418: L-ascorbic acid binding1.43E-02
81GO:0043130: ubiquitin binding1.43E-02
82GO:0008408: 3'-5' exonuclease activity1.64E-02
83GO:0004540: ribonuclease activity1.64E-02
84GO:0019706: protein-cysteine S-palmitoyltransferase activity1.64E-02
85GO:0016740: transferase activity1.84E-02
86GO:0047134: protein-disulfide reductase activity2.09E-02
87GO:0005507: copper ion binding2.32E-02
88GO:0001085: RNA polymerase II transcription factor binding2.33E-02
89GO:0004791: thioredoxin-disulfide reductase activity2.45E-02
90GO:0050662: coenzyme binding2.45E-02
91GO:0004872: receptor activity2.58E-02
92GO:0008137: NADH dehydrogenase (ubiquinone) activity2.71E-02
93GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.24E-02
94GO:0016413: O-acetyltransferase activity3.38E-02
95GO:0008194: UDP-glycosyltransferase activity3.47E-02
96GO:0009931: calcium-dependent protein serine/threonine kinase activity3.80E-02
97GO:0004806: triglyceride lipase activity3.95E-02
98GO:0004004: ATP-dependent RNA helicase activity3.95E-02
99GO:0004683: calmodulin-dependent protein kinase activity3.95E-02
100GO:0005215: transporter activity4.48E-02
101GO:0030145: manganese ion binding4.71E-02
102GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.71E-02
103GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.71E-02
RankGO TermAdjusted P value
1GO:0005829: cytosol3.83E-06
2GO:0005886: plasma membrane1.09E-05
3GO:0005794: Golgi apparatus1.61E-05
4GO:0005635: nuclear envelope3.40E-05
5GO:0005783: endoplasmic reticulum4.04E-05
6GO:0031902: late endosome membrane1.54E-04
7GO:0030014: CCR4-NOT complex2.72E-04
8GO:0000138: Golgi trans cisterna2.72E-04
9GO:0031304: intrinsic component of mitochondrial inner membrane5.99E-04
10GO:0000015: phosphopyruvate hydratase complex5.99E-04
11GO:0031314: extrinsic component of mitochondrial inner membrane5.99E-04
12GO:0030658: transport vesicle membrane1.39E-03
13GO:0005741: mitochondrial outer membrane1.50E-03
14GO:0016021: integral component of membrane2.26E-03
15GO:0005746: mitochondrial respiratory chain2.37E-03
16GO:0000813: ESCRT I complex2.37E-03
17GO:0030140: trans-Golgi network transport vesicle2.93E-03
18GO:0030173: integral component of Golgi membrane3.52E-03
19GO:0031597: cytosolic proteasome complex3.52E-03
20GO:0005737: cytoplasm3.58E-03
21GO:0031595: nuclear proteasome complex4.15E-03
22GO:0012507: ER to Golgi transport vesicle membrane4.82E-03
23GO:0045273: respiratory chain complex II4.82E-03
24GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)4.82E-03
25GO:0008180: COP9 signalosome6.25E-03
26GO:0008540: proteasome regulatory particle, base subcomplex7.03E-03
27GO:0009506: plasmodesma7.16E-03
28GO:0005740: mitochondrial envelope7.82E-03
29GO:0048471: perinuclear region of cytoplasm8.66E-03
30GO:0005789: endoplasmic reticulum membrane8.97E-03
31GO:0005750: mitochondrial respiratory chain complex III1.13E-02
32GO:0031966: mitochondrial membrane1.17E-02
33GO:0030176: integral component of endoplasmic reticulum membrane1.23E-02
34GO:0016020: membrane1.27E-02
35GO:0005769: early endosome1.33E-02
36GO:0045271: respiratory chain complex I1.53E-02
37GO:0005839: proteasome core complex1.64E-02
38GO:0005774: vacuolar membrane1.70E-02
39GO:0005773: vacuole1.76E-02
40GO:0000790: nuclear chromatin2.09E-02
41GO:0030136: clathrin-coated vesicle2.09E-02
42GO:0005743: mitochondrial inner membrane2.12E-02
43GO:0005654: nucleoplasm2.19E-02
44GO:0005770: late endosome2.33E-02
45GO:0009524: phragmoplast2.37E-02
46GO:0019898: extrinsic component of membrane2.58E-02
47GO:0031965: nuclear membrane2.58E-02
48GO:0005802: trans-Golgi network2.76E-02
49GO:0005730: nucleolus3.09E-02
50GO:0032580: Golgi cisterna membrane3.10E-02
51GO:0005778: peroxisomal membrane3.24E-02
52GO:0005667: transcription factor complex3.80E-02
53GO:0000325: plant-type vacuole4.71E-02
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Gene type



Gene DE type