GO Enrichment Analysis of Co-expressed Genes with
AT3G54900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 2 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 3 | GO:1902171: regulation of tocopherol cyclase activity | 0.00E+00 |
| 4 | GO:0046677: response to antibiotic | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 4.16E-08 |
| 6 | GO:0015995: chlorophyll biosynthetic process | 9.55E-06 |
| 7 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.49E-05 |
| 8 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 8.18E-05 |
| 9 | GO:0016122: xanthophyll metabolic process | 8.18E-05 |
| 10 | GO:0090153: regulation of sphingolipid biosynthetic process | 1.42E-04 |
| 11 | GO:0009765: photosynthesis, light harvesting | 2.85E-04 |
| 12 | GO:0010117: photoprotection | 3.65E-04 |
| 13 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 4.48E-04 |
| 14 | GO:0034599: cellular response to oxidative stress | 4.61E-04 |
| 15 | GO:0010189: vitamin E biosynthetic process | 5.36E-04 |
| 16 | GO:0071470: cellular response to osmotic stress | 5.36E-04 |
| 17 | GO:0009645: response to low light intensity stimulus | 6.27E-04 |
| 18 | GO:0009769: photosynthesis, light harvesting in photosystem II | 6.27E-04 |
| 19 | GO:0050821: protein stabilization | 7.22E-04 |
| 20 | GO:0009642: response to light intensity | 7.22E-04 |
| 21 | GO:0006353: DNA-templated transcription, termination | 7.22E-04 |
| 22 | GO:0071482: cellular response to light stimulus | 8.20E-04 |
| 23 | GO:0010206: photosystem II repair | 9.20E-04 |
| 24 | GO:0009688: abscisic acid biosynthetic process | 1.13E-03 |
| 25 | GO:0019538: protein metabolic process | 1.13E-03 |
| 26 | GO:0043085: positive regulation of catalytic activity | 1.24E-03 |
| 27 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.24E-03 |
| 28 | GO:0030148: sphingolipid biosynthetic process | 1.24E-03 |
| 29 | GO:0018107: peptidyl-threonine phosphorylation | 1.47E-03 |
| 30 | GO:0009767: photosynthetic electron transport chain | 1.47E-03 |
| 31 | GO:0009269: response to desiccation | 2.26E-03 |
| 32 | GO:0070417: cellular response to cold | 2.84E-03 |
| 33 | GO:0009723: response to ethylene | 3.14E-03 |
| 34 | GO:0006662: glycerol ether metabolic process | 3.15E-03 |
| 35 | GO:0055114: oxidation-reduction process | 3.25E-03 |
| 36 | GO:0007018: microtubule-based movement | 3.31E-03 |
| 37 | GO:0010193: response to ozone | 3.63E-03 |
| 38 | GO:0016311: dephosphorylation | 5.41E-03 |
| 39 | GO:0018298: protein-chromophore linkage | 5.60E-03 |
| 40 | GO:0009813: flavonoid biosynthetic process | 5.80E-03 |
| 41 | GO:0010218: response to far red light | 5.99E-03 |
| 42 | GO:0007568: aging | 6.19E-03 |
| 43 | GO:0006865: amino acid transport | 6.39E-03 |
| 44 | GO:0009637: response to blue light | 6.60E-03 |
| 45 | GO:0010114: response to red light | 7.87E-03 |
| 46 | GO:0009644: response to high light intensity | 8.31E-03 |
| 47 | GO:0042538: hyperosmotic salinity response | 9.22E-03 |
| 48 | GO:0010224: response to UV-B | 9.93E-03 |
| 49 | GO:0043086: negative regulation of catalytic activity | 1.09E-02 |
| 50 | GO:0018105: peptidyl-serine phosphorylation | 1.27E-02 |
| 51 | GO:0007623: circadian rhythm | 1.83E-02 |
| 52 | GO:0009409: response to cold | 2.41E-02 |
| 53 | GO:0009658: chloroplast organization | 2.50E-02 |
| 54 | GO:0007049: cell cycle | 2.70E-02 |
| 55 | GO:0044550: secondary metabolite biosynthetic process | 3.09E-02 |
| 56 | GO:0045454: cell redox homeostasis | 3.31E-02 |
| 57 | GO:0032259: methylation | 3.72E-02 |
| 58 | GO:0006629: lipid metabolic process | 3.84E-02 |
| 59 | GO:0009873: ethylene-activated signaling pathway | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 2 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 3 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 4 | GO:0004462: lactoylglutathione lyase activity | 3.53E-06 |
| 5 | GO:0052631: sphingolipid delta-8 desaturase activity | 3.25E-05 |
| 6 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 3.25E-05 |
| 7 | GO:0008158: hedgehog receptor activity | 3.25E-05 |
| 8 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 3.25E-05 |
| 9 | GO:0019172: glyoxalase III activity | 8.18E-05 |
| 10 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 2.11E-04 |
| 11 | GO:0016851: magnesium chelatase activity | 2.11E-04 |
| 12 | GO:0051538: 3 iron, 4 sulfur cluster binding | 3.65E-04 |
| 13 | GO:0004602: glutathione peroxidase activity | 5.36E-04 |
| 14 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 1.13E-03 |
| 15 | GO:0008047: enzyme activator activity | 1.13E-03 |
| 16 | GO:0004190: aspartic-type endopeptidase activity | 1.72E-03 |
| 17 | GO:0031409: pigment binding | 1.85E-03 |
| 18 | GO:0003954: NADH dehydrogenase activity | 1.99E-03 |
| 19 | GO:0047134: protein-disulfide reductase activity | 2.84E-03 |
| 20 | GO:0004791: thioredoxin-disulfide reductase activity | 3.31E-03 |
| 21 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.97E-03 |
| 22 | GO:0016168: chlorophyll binding | 4.85E-03 |
| 23 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 6.60E-03 |
| 24 | GO:0003993: acid phosphatase activity | 6.80E-03 |
| 25 | GO:0003777: microtubule motor activity | 1.04E-02 |
| 26 | GO:0015171: amino acid transmembrane transporter activity | 1.04E-02 |
| 27 | GO:0015035: protein disulfide oxidoreductase activity | 1.27E-02 |
| 28 | GO:0016829: lyase activity | 1.54E-02 |
| 29 | GO:0046910: pectinesterase inhibitor activity | 1.74E-02 |
| 30 | GO:0008017: microtubule binding | 1.89E-02 |
| 31 | GO:0008168: methyltransferase activity | 2.43E-02 |
| 32 | GO:0008233: peptidase activity | 2.87E-02 |
| 33 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 3.49E-02 |
| 34 | GO:0008289: lipid binding | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 5.92E-10 |
| 3 | GO:0009534: chloroplast thylakoid | 1.24E-09 |
| 4 | GO:0009941: chloroplast envelope | 3.08E-07 |
| 5 | GO:0009517: PSII associated light-harvesting complex II | 1.32E-06 |
| 6 | GO:0009507: chloroplast | 2.31E-06 |
| 7 | GO:0009579: thylakoid | 1.82E-05 |
| 8 | GO:0030095: chloroplast photosystem II | 4.55E-05 |
| 9 | GO:0031304: intrinsic component of mitochondrial inner membrane | 8.18E-05 |
| 10 | GO:0010287: plastoglobule | 9.09E-05 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 9.86E-05 |
| 12 | GO:0010007: magnesium chelatase complex | 1.42E-04 |
| 13 | GO:0009522: photosystem I | 1.57E-04 |
| 14 | GO:0030660: Golgi-associated vesicle membrane | 2.85E-04 |
| 15 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 2.85E-04 |
| 16 | GO:0009570: chloroplast stroma | 4.88E-04 |
| 17 | GO:0031977: thylakoid lumen | 5.22E-04 |
| 18 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 7.22E-04 |
| 19 | GO:0009538: photosystem I reaction center | 7.22E-04 |
| 20 | GO:0009706: chloroplast inner membrane | 1.05E-03 |
| 21 | GO:0005765: lysosomal membrane | 1.24E-03 |
| 22 | GO:0030076: light-harvesting complex | 1.72E-03 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 2.12E-03 |
| 24 | GO:0005871: kinesin complex | 2.84E-03 |
| 25 | GO:0031969: chloroplast membrane | 3.36E-03 |
| 26 | GO:0009523: photosystem II | 3.47E-03 |
| 27 | GO:0019898: extrinsic component of membrane | 3.47E-03 |
| 28 | GO:0005777: peroxisome | 1.01E-02 |
| 29 | GO:0010008: endosome membrane | 1.11E-02 |
| 30 | GO:0005623: cell | 1.48E-02 |
| 31 | GO:0005874: microtubule | 2.84E-02 |