Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0006223: uracil salvage0.00E+00
3GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
4GO:0010394: homogalacturonan metabolic process0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0042493: response to drug0.00E+00
7GO:0042371: vitamin K biosynthetic process0.00E+00
8GO:1905499: trichome papilla formation0.00E+00
9GO:0050732: negative regulation of peptidyl-tyrosine phosphorylation0.00E+00
10GO:0006633: fatty acid biosynthetic process1.56E-08
11GO:0071555: cell wall organization1.98E-08
12GO:0010025: wax biosynthetic process4.52E-06
13GO:0010115: regulation of abscisic acid biosynthetic process5.13E-06
14GO:0042335: cuticle development2.17E-05
15GO:0042761: very long-chain fatty acid biosynthetic process2.79E-05
16GO:0009825: multidimensional cell growth1.02E-04
17GO:0030244: cellulose biosynthetic process1.29E-04
18GO:0042254: ribosome biogenesis1.65E-04
19GO:0030245: cellulose catabolic process2.12E-04
20GO:0042372: phylloquinone biosynthetic process2.20E-04
21GO:0048640: negative regulation of developmental growth3.37E-04
22GO:1904966: positive regulation of vitamin E biosynthetic process3.37E-04
23GO:0010442: guard cell morphogenesis3.37E-04
24GO:0046520: sphingoid biosynthetic process3.37E-04
25GO:1904964: positive regulation of phytol biosynthetic process3.37E-04
26GO:0042759: long-chain fatty acid biosynthetic process3.37E-04
27GO:0045488: pectin metabolic process3.37E-04
28GO:1902458: positive regulation of stomatal opening3.37E-04
29GO:0006835: dicarboxylic acid transport3.37E-04
30GO:0071588: hydrogen peroxide mediated signaling pathway3.37E-04
31GO:0060627: regulation of vesicle-mediated transport3.37E-04
32GO:0042538: hyperosmotic salinity response4.31E-04
33GO:0006869: lipid transport4.58E-04
34GO:0043255: regulation of carbohydrate biosynthetic process7.34E-04
35GO:1902326: positive regulation of chlorophyll biosynthetic process7.34E-04
36GO:1903426: regulation of reactive oxygen species biosynthetic process7.34E-04
37GO:0010289: homogalacturonan biosynthetic process7.34E-04
38GO:0052541: plant-type cell wall cellulose metabolic process7.34E-04
39GO:0010027: thylakoid membrane organization7.75E-04
40GO:0010411: xyloglucan metabolic process9.50E-04
41GO:0090391: granum assembly1.19E-03
42GO:0009062: fatty acid catabolic process1.19E-03
43GO:0006696: ergosterol biosynthetic process1.19E-03
44GO:0015840: urea transport1.19E-03
45GO:2001295: malonyl-CoA biosynthetic process1.19E-03
46GO:0010143: cutin biosynthetic process1.22E-03
47GO:0006833: water transport1.52E-03
48GO:0009650: UV protection1.71E-03
49GO:0046739: transport of virus in multicellular host1.71E-03
50GO:1901332: negative regulation of lateral root development1.71E-03
51GO:0051016: barbed-end actin filament capping1.71E-03
52GO:0006168: adenine salvage1.71E-03
53GO:0010088: phloem development1.71E-03
54GO:0006166: purine ribonucleoside salvage1.71E-03
55GO:0007231: osmosensory signaling pathway1.71E-03
56GO:0051639: actin filament network formation1.71E-03
57GO:0007017: microtubule-based process1.86E-03
58GO:0016998: cell wall macromolecule catabolic process2.04E-03
59GO:0042546: cell wall biogenesis2.11E-03
60GO:0016042: lipid catabolic process2.24E-03
61GO:0006085: acetyl-CoA biosynthetic process2.30E-03
62GO:0033500: carbohydrate homeostasis2.30E-03
63GO:0044206: UMP salvage2.30E-03
64GO:0009956: radial pattern formation2.30E-03
65GO:0015689: molybdate ion transport2.30E-03
66GO:0051764: actin crosslink formation2.30E-03
67GO:0019722: calcium-mediated signaling2.65E-03
68GO:0006412: translation2.72E-03
69GO:0048359: mucilage metabolic process involved in seed coat development2.93E-03
70GO:0010236: plastoquinone biosynthetic process2.93E-03
71GO:0045038: protein import into chloroplast thylakoid membrane2.93E-03
72GO:0043097: pyrimidine nucleoside salvage2.93E-03
73GO:0044209: AMP salvage2.93E-03
74GO:0006665: sphingolipid metabolic process2.93E-03
75GO:0045489: pectin biosynthetic process3.34E-03
76GO:0010182: sugar mediated signaling pathway3.34E-03
77GO:0009826: unidimensional cell growth3.48E-03
78GO:0010337: regulation of salicylic acid metabolic process3.63E-03
79GO:0006206: pyrimidine nucleobase metabolic process3.63E-03
80GO:0035435: phosphate ion transmembrane transport3.63E-03
81GO:0006561: proline biosynthetic process3.63E-03
82GO:0006751: glutathione catabolic process3.63E-03
83GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.63E-03
84GO:0006694: steroid biosynthetic process4.37E-03
85GO:1901259: chloroplast rRNA processing4.37E-03
86GO:0010019: chloroplast-nucleus signaling pathway4.37E-03
87GO:0009955: adaxial/abaxial pattern specification4.37E-03
88GO:0010583: response to cyclopentenone4.40E-03
89GO:0051693: actin filament capping5.15E-03
90GO:0030497: fatty acid elongation5.15E-03
91GO:0010196: nonphotochemical quenching5.15E-03
92GO:0009610: response to symbiotic fungus5.15E-03
93GO:0009772: photosynthetic electron transport in photosystem II5.15E-03
94GO:0007267: cell-cell signaling5.31E-03
95GO:0009735: response to cytokinin5.51E-03
96GO:0005975: carbohydrate metabolic process5.80E-03
97GO:0008610: lipid biosynthetic process5.99E-03
98GO:2000070: regulation of response to water deprivation5.99E-03
99GO:0009627: systemic acquired resistance6.66E-03
100GO:0009827: plant-type cell wall modification6.87E-03
101GO:0007186: G-protein coupled receptor signaling pathway6.87E-03
102GO:0010497: plasmodesmata-mediated intercellular transport6.87E-03
103GO:0006526: arginine biosynthetic process6.87E-03
104GO:0032544: plastid translation6.87E-03
105GO:0009808: lignin metabolic process6.87E-03
106GO:0015996: chlorophyll catabolic process6.87E-03
107GO:0015995: chlorophyll biosynthetic process7.03E-03
108GO:0000902: cell morphogenesis7.79E-03
109GO:0015780: nucleotide-sugar transport7.79E-03
110GO:0009834: plant-type secondary cell wall biogenesis8.59E-03
111GO:0007568: aging9.01E-03
112GO:0006629: lipid metabolic process9.25E-03
113GO:0006032: chitin catabolic process9.76E-03
114GO:0009688: abscisic acid biosynthetic process9.76E-03
115GO:0043069: negative regulation of programmed cell death9.76E-03
116GO:0006949: syncytium formation9.76E-03
117GO:0010215: cellulose microfibril organization9.76E-03
118GO:0006816: calcium ion transport1.08E-02
119GO:0009750: response to fructose1.08E-02
120GO:0010015: root morphogenesis1.08E-02
121GO:0000038: very long-chain fatty acid metabolic process1.08E-02
122GO:0006631: fatty acid metabolic process1.18E-02
123GO:0016024: CDP-diacylglycerol biosynthetic process1.19E-02
124GO:0045037: protein import into chloroplast stroma1.19E-02
125GO:0010102: lateral root morphogenesis1.30E-02
126GO:0006006: glucose metabolic process1.30E-02
127GO:0030036: actin cytoskeleton organization1.30E-02
128GO:0009718: anthocyanin-containing compound biosynthetic process1.30E-02
129GO:0009725: response to hormone1.30E-02
130GO:0009409: response to cold1.31E-02
131GO:0008643: carbohydrate transport1.38E-02
132GO:0010207: photosystem II assembly1.42E-02
133GO:0007015: actin filament organization1.42E-02
134GO:0009933: meristem structural organization1.42E-02
135GO:0019253: reductive pentose-phosphate cycle1.42E-02
136GO:0010167: response to nitrate1.54E-02
137GO:0070588: calcium ion transmembrane transport1.54E-02
138GO:0010053: root epidermal cell differentiation1.54E-02
139GO:0009833: plant-type primary cell wall biogenesis1.66E-02
140GO:0006071: glycerol metabolic process1.66E-02
141GO:0009809: lignin biosynthetic process1.73E-02
142GO:0000027: ribosomal large subunit assembly1.79E-02
143GO:0051017: actin filament bundle assembly1.79E-02
144GO:0009116: nucleoside metabolic process1.79E-02
145GO:0055114: oxidation-reduction process1.88E-02
146GO:0009695: jasmonic acid biosynthetic process1.92E-02
147GO:0010026: trichome differentiation1.92E-02
148GO:0043622: cortical microtubule organization1.92E-02
149GO:0051302: regulation of cell division1.92E-02
150GO:0031408: oxylipin biosynthetic process2.05E-02
151GO:0009414: response to water deprivation2.09E-02
152GO:0009416: response to light stimulus2.19E-02
153GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.33E-02
154GO:0009294: DNA mediated transformation2.33E-02
155GO:0009411: response to UV2.33E-02
156GO:0040007: growth2.33E-02
157GO:0010091: trichome branching2.47E-02
158GO:0009306: protein secretion2.47E-02
159GO:0034220: ion transmembrane transport2.77E-02
160GO:0000413: protein peptidyl-prolyl isomerization2.77E-02
161GO:0006520: cellular amino acid metabolic process2.92E-02
162GO:0010305: leaf vascular tissue pattern formation2.92E-02
163GO:0009741: response to brassinosteroid2.92E-02
164GO:0007018: microtubule-based movement3.07E-02
165GO:0055085: transmembrane transport3.11E-02
166GO:0000302: response to reactive oxygen species3.39E-02
167GO:0071554: cell wall organization or biogenesis3.39E-02
168GO:0006635: fatty acid beta-oxidation3.39E-02
169GO:0016132: brassinosteroid biosynthetic process3.39E-02
170GO:0009408: response to heat3.44E-02
171GO:0042744: hydrogen peroxide catabolic process3.51E-02
172GO:0032502: developmental process3.55E-02
173GO:1901657: glycosyl compound metabolic process3.72E-02
174GO:0009828: plant-type cell wall loosening3.88E-02
175GO:0045490: pectin catabolic process4.24E-02
176GO:0016126: sterol biosynthetic process4.40E-02
177GO:0042128: nitrate assimilation4.76E-02
RankGO TermAdjusted P value
1GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
4GO:0102344: 3-hydroxy-behenoyl-CoA dehydratase activity0.00E+00
5GO:0010301: xanthoxin dehydrogenase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0102345: 3-hydroxy-lignoceroyl-CoA dehydratase activity0.00E+00
10GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
11GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
12GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
13GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
14GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
15GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
16GO:0050614: delta24-sterol reductase activity0.00E+00
17GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
18GO:0019843: rRNA binding1.09E-07
19GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.18E-06
20GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.13E-06
21GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.82E-05
22GO:0052689: carboxylic ester hydrolase activity5.49E-05
23GO:0009922: fatty acid elongase activity1.12E-04
24GO:0003989: acetyl-CoA carboxylase activity1.12E-04
25GO:0016788: hydrolase activity, acting on ester bonds1.65E-04
26GO:0051920: peroxiredoxin activity2.20E-04
27GO:0008810: cellulase activity2.39E-04
28GO:0008289: lipid binding2.81E-04
29GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.37E-04
30GO:0080132: fatty acid alpha-hydroxylase activity3.37E-04
31GO:0009374: biotin binding3.37E-04
32GO:0004321: fatty-acyl-CoA synthase activity3.37E-04
33GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity3.37E-04
34GO:0015200: methylammonium transmembrane transporter activity3.37E-04
35GO:0004163: diphosphomevalonate decarboxylase activity3.37E-04
36GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.37E-04
37GO:0000170: sphingosine hydroxylase activity3.37E-04
38GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.37E-04
39GO:0008809: carnitine racemase activity3.37E-04
40GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.37E-04
41GO:0016209: antioxidant activity3.60E-04
42GO:0003735: structural constituent of ribosome4.59E-04
43GO:0016762: xyloglucan:xyloglucosyl transferase activity4.85E-04
44GO:0008805: carbon-monoxide oxygenase activity7.34E-04
45GO:0042284: sphingolipid delta-4 desaturase activity7.34E-04
46GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.34E-04
47GO:0003839: gamma-glutamylcyclotransferase activity7.34E-04
48GO:0016798: hydrolase activity, acting on glycosyl bonds9.50E-04
49GO:0004565: beta-galactosidase activity1.08E-03
50GO:0005504: fatty acid binding1.19E-03
51GO:0005310: dicarboxylic acid transmembrane transporter activity1.19E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.19E-03
53GO:0004075: biotin carboxylase activity1.19E-03
54GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.19E-03
55GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.19E-03
56GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.19E-03
57GO:0003999: adenine phosphoribosyltransferase activity1.71E-03
58GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.71E-03
59GO:0004165: dodecenoyl-CoA delta-isomerase activity1.71E-03
60GO:0017077: oxidative phosphorylation uncoupler activity1.71E-03
61GO:0001872: (1->3)-beta-D-glucan binding1.71E-03
62GO:0003878: ATP citrate synthase activity1.71E-03
63GO:0045430: chalcone isomerase activity2.30E-03
64GO:0052793: pectin acetylesterase activity2.30E-03
65GO:0004506: squalene monooxygenase activity2.30E-03
66GO:0015098: molybdate ion transmembrane transporter activity2.30E-03
67GO:0043495: protein anchor2.30E-03
68GO:0015204: urea transmembrane transporter activity2.30E-03
69GO:0004659: prenyltransferase activity2.30E-03
70GO:0004845: uracil phosphoribosyltransferase activity2.30E-03
71GO:0016836: hydro-lyase activity2.30E-03
72GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.30E-03
73GO:0030570: pectate lyase activity2.43E-03
74GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.44E-03
75GO:0008514: organic anion transmembrane transporter activity2.65E-03
76GO:0004040: amidase activity2.93E-03
77GO:0016208: AMP binding3.63E-03
78GO:0004130: cytochrome-c peroxidase activity3.63E-03
79GO:0016688: L-ascorbate peroxidase activity3.63E-03
80GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.63E-03
81GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.63E-03
82GO:0008519: ammonium transmembrane transporter activity3.63E-03
83GO:0051753: mannan synthase activity4.37E-03
84GO:0004849: uridine kinase activity4.37E-03
85GO:0051015: actin filament binding4.69E-03
86GO:0016759: cellulose synthase activity4.99E-03
87GO:0019899: enzyme binding5.15E-03
88GO:0004620: phospholipase activity5.15E-03
89GO:0005200: structural constituent of cytoskeleton5.31E-03
90GO:0016413: O-acetyltransferase activity5.63E-03
91GO:0015250: water channel activity5.96E-03
92GO:0052747: sinapyl alcohol dehydrogenase activity5.99E-03
93GO:0030674: protein binding, bridging5.99E-03
94GO:0030247: polysaccharide binding7.03E-03
95GO:0004871: signal transducer activity7.22E-03
96GO:0008889: glycerophosphodiester phosphodiesterase activity7.79E-03
97GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.79E-03
98GO:0016207: 4-coumarate-CoA ligase activity7.79E-03
99GO:0047617: acyl-CoA hydrolase activity8.75E-03
100GO:0004568: chitinase activity9.76E-03
101GO:0045551: cinnamyl-alcohol dehydrogenase activity1.19E-02
102GO:0015114: phosphate ion transmembrane transporter activity1.30E-02
103GO:0008081: phosphoric diester hydrolase activity1.30E-02
104GO:0004022: alcohol dehydrogenase (NAD) activity1.30E-02
105GO:0005262: calcium channel activity1.30E-02
106GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.42E-02
107GO:0008146: sulfotransferase activity1.54E-02
108GO:0051287: NAD binding1.55E-02
109GO:0004601: peroxidase activity1.61E-02
110GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.66E-02
111GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.66E-02
112GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.66E-02
113GO:0004725: protein tyrosine phosphatase activity1.66E-02
114GO:0005528: FK506 binding1.79E-02
115GO:0003777: microtubule motor activity1.91E-02
116GO:0004707: MAP kinase activity2.05E-02
117GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.11E-02
118GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.19E-02
119GO:0004650: polygalacturonase activity2.25E-02
120GO:0016760: cellulose synthase (UDP-forming) activity2.33E-02
121GO:0022891: substrate-specific transmembrane transporter activity2.33E-02
122GO:0016746: transferase activity, transferring acyl groups2.53E-02
123GO:0004872: receptor activity3.23E-02
124GO:0004252: serine-type endopeptidase activity3.42E-02
125GO:0003924: GTPase activity3.44E-02
126GO:0016491: oxidoreductase activity3.45E-02
127GO:0000156: phosphorelay response regulator activity3.72E-02
128GO:0016791: phosphatase activity3.88E-02
129GO:0016722: oxidoreductase activity, oxidizing metal ions4.05E-02
130GO:0008017: microtubule binding4.44E-02
131GO:0005525: GTP binding4.53E-02
132GO:0016168: chlorophyll binding4.58E-02
133GO:0102483: scopolin beta-glucosidase activity4.94E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009923: fatty acid elongase complex0.00E+00
3GO:0009930: longitudinal side of cell surface0.00E+00
4GO:0046658: anchored component of plasma membrane6.28E-13
5GO:0048046: apoplast2.28E-12
6GO:0009505: plant-type cell wall1.11E-11
7GO:0005618: cell wall2.97E-10
8GO:0031225: anchored component of membrane3.66E-10
9GO:0009570: chloroplast stroma6.53E-10
10GO:0005576: extracellular region1.12E-09
11GO:0009941: chloroplast envelope1.31E-09
12GO:0005886: plasma membrane1.00E-07
13GO:0009507: chloroplast3.14E-07
14GO:0009534: chloroplast thylakoid7.67E-07
15GO:0009506: plasmodesma5.40E-06
16GO:0016020: membrane7.17E-05
17GO:0005802: trans-Golgi network1.01E-04
18GO:0005768: endosome1.52E-04
19GO:0009579: thylakoid1.89E-04
20GO:0005840: ribosome2.39E-04
21GO:0005794: Golgi apparatus2.82E-04
22GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.37E-04
23GO:0009515: granal stacked thylakoid3.37E-04
24GO:0016021: integral component of membrane4.26E-04
25GO:0009535: chloroplast thylakoid membrane6.44E-04
26GO:0008290: F-actin capping protein complex7.34E-04
27GO:0005884: actin filament8.40E-04
28GO:0009543: chloroplast thylakoid lumen1.16E-03
29GO:0009528: plastid inner membrane1.19E-03
30GO:0009897: external side of plasma membrane1.19E-03
31GO:0009317: acetyl-CoA carboxylase complex1.19E-03
32GO:0016328: lateral plasma membrane1.19E-03
33GO:0032432: actin filament bundle1.71E-03
34GO:0009346: citrate lyase complex1.71E-03
35GO:0015630: microtubule cytoskeleton1.71E-03
36GO:0009527: plastid outer membrane2.30E-03
37GO:0005874: microtubule4.85E-03
38GO:0042807: central vacuole5.15E-03
39GO:0009533: chloroplast stromal thylakoid5.15E-03
40GO:0010319: stromule5.31E-03
41GO:0005783: endoplasmic reticulum6.32E-03
42GO:0000326: protein storage vacuole6.87E-03
43GO:0045298: tubulin complex7.79E-03
44GO:0005763: mitochondrial small ribosomal subunit7.79E-03
45GO:0015934: large ribosomal subunit9.01E-03
46GO:0031977: thylakoid lumen1.18E-02
47GO:0000311: plastid large ribosomal subunit1.19E-02
48GO:0000139: Golgi membrane1.31E-02
49GO:0005789: endoplasmic reticulum membrane1.65E-02
50GO:0005769: early endosome1.66E-02
51GO:0042651: thylakoid membrane1.92E-02
52GO:0009532: plastid stroma2.05E-02
53GO:0022626: cytosolic ribosome2.05E-02
54GO:0031969: chloroplast membrane2.11E-02
55GO:0005871: kinesin complex2.62E-02
56GO:0009504: cell plate3.23E-02
57GO:0009523: photosystem II3.23E-02
58GO:0005778: peroxisomal membrane4.05E-02
59GO:0005887: integral component of plasma membrane5.00E-02
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Gene type



Gene DE type