GO Enrichment Analysis of Co-expressed Genes with
AT3G54660
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009661: chromoplast organization | 0.00E+00 |
| 2 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 3 | GO:0033231: carbohydrate export | 0.00E+00 |
| 4 | GO:1905255: regulation of RNA binding transcription factor activity | 0.00E+00 |
| 5 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 6 | GO:0071482: cellular response to light stimulus | 4.85E-05 |
| 7 | GO:0046467: membrane lipid biosynthetic process | 7.75E-05 |
| 8 | GO:0065002: intracellular protein transmembrane transport | 7.75E-05 |
| 9 | GO:1902334: fructose export from vacuole to cytoplasm | 7.75E-05 |
| 10 | GO:0015755: fructose transport | 7.75E-05 |
| 11 | GO:0019646: aerobic electron transport chain | 7.75E-05 |
| 12 | GO:0043953: protein transport by the Tat complex | 7.75E-05 |
| 13 | GO:0010207: photosystem II assembly | 1.60E-04 |
| 14 | GO:0035304: regulation of protein dephosphorylation | 1.85E-04 |
| 15 | GO:0018026: peptidyl-lysine monomethylation | 1.85E-04 |
| 16 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.85E-04 |
| 17 | GO:0016122: xanthophyll metabolic process | 1.85E-04 |
| 18 | GO:0009915: phloem sucrose loading | 1.85E-04 |
| 19 | GO:0016050: vesicle organization | 3.11E-04 |
| 20 | GO:0005977: glycogen metabolic process | 3.11E-04 |
| 21 | GO:0051639: actin filament network formation | 4.49E-04 |
| 22 | GO:0019252: starch biosynthetic process | 5.25E-04 |
| 23 | GO:0042938: dipeptide transport | 5.98E-04 |
| 24 | GO:0010021: amylopectin biosynthetic process | 5.98E-04 |
| 25 | GO:0009755: hormone-mediated signaling pathway | 5.98E-04 |
| 26 | GO:0051764: actin crosslink formation | 5.98E-04 |
| 27 | GO:0015994: chlorophyll metabolic process | 5.98E-04 |
| 28 | GO:0010363: regulation of plant-type hypersensitive response | 5.98E-04 |
| 29 | GO:0010438: cellular response to sulfur starvation | 7.57E-04 |
| 30 | GO:0016120: carotene biosynthetic process | 7.57E-04 |
| 31 | GO:0010027: thylakoid membrane organization | 8.00E-04 |
| 32 | GO:0042549: photosystem II stabilization | 9.24E-04 |
| 33 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 9.24E-04 |
| 34 | GO:0042372: phylloquinone biosynthetic process | 1.10E-03 |
| 35 | GO:0010189: vitamin E biosynthetic process | 1.10E-03 |
| 36 | GO:0031930: mitochondria-nucleus signaling pathway | 1.10E-03 |
| 37 | GO:0010439: regulation of glucosinolate biosynthetic process | 1.48E-03 |
| 38 | GO:0030091: protein repair | 1.48E-03 |
| 39 | GO:2000070: regulation of response to water deprivation | 1.48E-03 |
| 40 | GO:0050821: protein stabilization | 1.48E-03 |
| 41 | GO:0005978: glycogen biosynthetic process | 1.48E-03 |
| 42 | GO:0009819: drought recovery | 1.48E-03 |
| 43 | GO:0009932: cell tip growth | 1.69E-03 |
| 44 | GO:0015996: chlorophyll catabolic process | 1.69E-03 |
| 45 | GO:0009644: response to high light intensity | 1.78E-03 |
| 46 | GO:0010206: photosystem II repair | 1.91E-03 |
| 47 | GO:0098656: anion transmembrane transport | 1.91E-03 |
| 48 | GO:0010205: photoinhibition | 2.14E-03 |
| 49 | GO:0043067: regulation of programmed cell death | 2.14E-03 |
| 50 | GO:0006857: oligopeptide transport | 2.36E-03 |
| 51 | GO:0006995: cellular response to nitrogen starvation | 2.37E-03 |
| 52 | GO:0055114: oxidation-reduction process | 2.50E-03 |
| 53 | GO:0019684: photosynthesis, light reaction | 2.61E-03 |
| 54 | GO:0009750: response to fructose | 2.61E-03 |
| 55 | GO:0009682: induced systemic resistance | 2.61E-03 |
| 56 | GO:0006979: response to oxidative stress | 2.80E-03 |
| 57 | GO:0015706: nitrate transport | 2.86E-03 |
| 58 | GO:0010105: negative regulation of ethylene-activated signaling pathway | 2.86E-03 |
| 59 | GO:0005983: starch catabolic process | 2.86E-03 |
| 60 | GO:0006094: gluconeogenesis | 3.12E-03 |
| 61 | GO:0009266: response to temperature stimulus | 3.38E-03 |
| 62 | GO:0010053: root epidermal cell differentiation | 3.66E-03 |
| 63 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.94E-03 |
| 64 | GO:0051017: actin filament bundle assembly | 4.23E-03 |
| 65 | GO:0008299: isoprenoid biosynthetic process | 4.52E-03 |
| 66 | GO:0051260: protein homooligomerization | 4.82E-03 |
| 67 | GO:0009814: defense response, incompatible interaction | 5.13E-03 |
| 68 | GO:0007623: circadian rhythm | 5.37E-03 |
| 69 | GO:0009625: response to insect | 5.45E-03 |
| 70 | GO:0070417: cellular response to cold | 6.10E-03 |
| 71 | GO:0007166: cell surface receptor signaling pathway | 6.13E-03 |
| 72 | GO:0009646: response to absence of light | 7.13E-03 |
| 73 | GO:0009567: double fertilization forming a zygote and endosperm | 8.97E-03 |
| 74 | GO:0071805: potassium ion transmembrane transport | 9.36E-03 |
| 75 | GO:0016126: sterol biosynthetic process | 1.02E-02 |
| 76 | GO:0016311: dephosphorylation | 1.18E-02 |
| 77 | GO:0007568: aging | 1.36E-02 |
| 78 | GO:0009631: cold acclimation | 1.36E-02 |
| 79 | GO:0009867: jasmonic acid mediated signaling pathway | 1.45E-02 |
| 80 | GO:0034599: cellular response to oxidative stress | 1.49E-02 |
| 81 | GO:0009753: response to jasmonic acid | 1.64E-02 |
| 82 | GO:0006631: fatty acid metabolic process | 1.64E-02 |
| 83 | GO:0008152: metabolic process | 1.68E-02 |
| 84 | GO:0031347: regulation of defense response | 1.98E-02 |
| 85 | GO:0006364: rRNA processing | 2.14E-02 |
| 86 | GO:0009585: red, far-red light phototransduction | 2.14E-02 |
| 87 | GO:0006813: potassium ion transport | 2.14E-02 |
| 88 | GO:0005975: carbohydrate metabolic process | 2.16E-02 |
| 89 | GO:0006096: glycolytic process | 2.41E-02 |
| 90 | GO:0009611: response to wounding | 2.77E-02 |
| 91 | GO:0006633: fatty acid biosynthetic process | 3.80E-02 |
| 92 | GO:0009739: response to gibberellin | 4.40E-02 |
| 93 | GO:0009617: response to bacterium | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015284: fructose uniporter activity | 0.00E+00 |
| 2 | GO:0051743: red chlorophyll catabolite reductase activity | 0.00E+00 |
| 3 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 4 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 5 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 7.75E-05 |
| 6 | GO:0050139: nicotinate-N-glucosyltransferase activity | 7.75E-05 |
| 7 | GO:0010242: oxygen evolving activity | 7.75E-05 |
| 8 | GO:0019172: glyoxalase III activity | 1.85E-04 |
| 9 | GO:0019156: isoamylase activity | 1.85E-04 |
| 10 | GO:0005353: fructose transmembrane transporter activity | 1.85E-04 |
| 11 | GO:0016868: intramolecular transferase activity, phosphotransferases | 1.85E-04 |
| 12 | GO:0005094: Rho GDP-dissociation inhibitor activity | 1.85E-04 |
| 13 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.85E-04 |
| 14 | GO:0004312: fatty acid synthase activity | 1.85E-04 |
| 15 | GO:0003954: NADH dehydrogenase activity | 2.27E-04 |
| 16 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 3.11E-04 |
| 17 | GO:0070402: NADPH binding | 3.11E-04 |
| 18 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 3.11E-04 |
| 19 | GO:0016853: isomerase activity | 4.90E-04 |
| 20 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 5.98E-04 |
| 21 | GO:0016279: protein-lysine N-methyltransferase activity | 5.98E-04 |
| 22 | GO:0042936: dipeptide transporter activity | 5.98E-04 |
| 23 | GO:0004506: squalene monooxygenase activity | 5.98E-04 |
| 24 | GO:0004556: alpha-amylase activity | 9.24E-04 |
| 25 | GO:0004462: lactoylglutathione lyase activity | 9.24E-04 |
| 26 | GO:0004332: fructose-bisphosphate aldolase activity | 9.24E-04 |
| 27 | GO:0035673: oligopeptide transmembrane transporter activity | 9.24E-04 |
| 28 | GO:0042578: phosphoric ester hydrolase activity | 9.24E-04 |
| 29 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.10E-03 |
| 30 | GO:0102425: myricetin 3-O-glucosyltransferase activity | 1.29E-03 |
| 31 | GO:0102360: daphnetin 3-O-glucosyltransferase activity | 1.29E-03 |
| 32 | GO:0047893: flavonol 3-O-glucosyltransferase activity | 1.48E-03 |
| 33 | GO:0047372: acylglycerol lipase activity | 2.61E-03 |
| 34 | GO:0015198: oligopeptide transporter activity | 2.86E-03 |
| 35 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.86E-03 |
| 36 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.86E-03 |
| 37 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.12E-03 |
| 38 | GO:0008266: poly(U) RNA binding | 3.38E-03 |
| 39 | GO:0051119: sugar transmembrane transporter activity | 3.66E-03 |
| 40 | GO:0016491: oxidoreductase activity | 4.20E-03 |
| 41 | GO:0015079: potassium ion transmembrane transporter activity | 4.52E-03 |
| 42 | GO:0035251: UDP-glucosyltransferase activity | 4.82E-03 |
| 43 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 5.01E-03 |
| 44 | GO:0019901: protein kinase binding | 7.49E-03 |
| 45 | GO:0051015: actin filament binding | 8.59E-03 |
| 46 | GO:0005096: GTPase activator activity | 1.27E-02 |
| 47 | GO:0030145: manganese ion binding | 1.36E-02 |
| 48 | GO:0005215: transporter activity | 1.45E-02 |
| 49 | GO:0003993: acid phosphatase activity | 1.49E-02 |
| 50 | GO:0004672: protein kinase activity | 2.07E-02 |
| 51 | GO:0003779: actin binding | 2.69E-02 |
| 52 | GO:0016787: hydrolase activity | 3.31E-02 |
| 53 | GO:0016829: lyase activity | 3.42E-02 |
| 54 | GO:0008194: UDP-glycosyltransferase activity | 4.40E-02 |
| 55 | GO:0003743: translation initiation factor activity | 4.53E-02 |
| 56 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 5.92E-18 |
| 4 | GO:0009570: chloroplast stroma | 2.75E-11 |
| 5 | GO:0009534: chloroplast thylakoid | 3.23E-10 |
| 6 | GO:0010287: plastoglobule | 3.96E-08 |
| 7 | GO:0031304: intrinsic component of mitochondrial inner membrane | 3.31E-07 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 1.99E-06 |
| 9 | GO:0009941: chloroplast envelope | 3.35E-05 |
| 10 | GO:0031361: integral component of thylakoid membrane | 7.75E-05 |
| 11 | GO:0031977: thylakoid lumen | 1.25E-04 |
| 12 | GO:0043036: starch grain | 1.85E-04 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 2.52E-04 |
| 14 | GO:0033281: TAT protein transport complex | 3.11E-04 |
| 15 | GO:0032432: actin filament bundle | 4.49E-04 |
| 16 | GO:0009543: chloroplast thylakoid lumen | 4.59E-04 |
| 17 | GO:0019898: extrinsic component of membrane | 5.25E-04 |
| 18 | GO:0009579: thylakoid | 1.24E-03 |
| 19 | GO:0031969: chloroplast membrane | 1.54E-03 |
| 20 | GO:0005884: actin filament | 2.61E-03 |
| 21 | GO:0009508: plastid chromosome | 3.12E-03 |
| 22 | GO:0009706: chloroplast inner membrane | 3.12E-03 |
| 23 | GO:0016602: CCAAT-binding factor complex | 3.12E-03 |
| 24 | GO:0030095: chloroplast photosystem II | 3.38E-03 |
| 25 | GO:0009295: nucleoid | 9.36E-03 |
| 26 | GO:0009536: plastid | 1.65E-02 |
| 27 | GO:0043231: intracellular membrane-bounded organelle | 1.68E-02 |
| 28 | GO:0005623: cell | 3.29E-02 |
| 29 | GO:0009705: plant-type vacuole membrane | 4.06E-02 |
| 30 | GO:0016021: integral component of membrane | 4.49E-02 |