Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019481: L-alanine catabolic process, by transamination0.00E+00
2GO:1901969: positive regulation of polynucleotide 3'-phosphatase activity0.00E+00
3GO:0006266: DNA ligation0.00E+00
4GO:1901972: positive regulation of DNA-5-methylcytosine glycosylase activity0.00E+00
5GO:0080136: priming of cellular response to stress6.71E-06
6GO:0072583: clathrin-dependent endocytosis5.17E-05
7GO:2000114: regulation of establishment of cell polarity5.17E-05
8GO:0019438: aromatic compound biosynthetic process5.17E-05
9GO:2000038: regulation of stomatal complex development7.23E-05
10GO:0010222: stem vascular tissue pattern formation7.23E-05
11GO:0006661: phosphatidylinositol biosynthetic process7.23E-05
12GO:0009920: cell plate formation involved in plant-type cell wall biogenesis1.20E-04
13GO:2000037: regulation of stomatal complex patterning1.46E-04
14GO:0000911: cytokinesis by cell plate formation1.46E-04
15GO:0080111: DNA demethylation1.74E-04
16GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.74E-04
17GO:0048766: root hair initiation2.03E-04
18GO:0010120: camalexin biosynthetic process2.33E-04
19GO:0006303: double-strand break repair via nonhomologous end joining2.33E-04
20GO:0000266: mitochondrial fission3.96E-04
21GO:0010229: inflorescence development4.30E-04
22GO:0035428: hexose transmembrane transport6.92E-04
23GO:0032259: methylation7.26E-04
24GO:0010091: trichome branching7.72E-04
25GO:0010584: pollen exine formation7.72E-04
26GO:0010051: xylem and phloem pattern formation8.55E-04
27GO:0046323: glucose import8.97E-04
28GO:0008654: phospholipid biosynthetic process9.82E-04
29GO:0010183: pollen tube guidance9.82E-04
30GO:0000302: response to reactive oxygen species1.02E-03
31GO:0001666: response to hypoxia1.30E-03
32GO:0048481: plant ovule development1.55E-03
33GO:0042542: response to hydrogen peroxide2.09E-03
34GO:0009846: pollen germination2.49E-03
35GO:0006979: response to oxidative stress2.60E-03
36GO:0010224: response to UV-B2.68E-03
37GO:0009626: plant-type hypersensitive response3.06E-03
38GO:0009620: response to fungus3.12E-03
39GO:0010150: leaf senescence4.81E-03
40GO:0010468: regulation of gene expression5.44E-03
41GO:0006970: response to osmotic stress6.85E-03
42GO:0009723: response to ethylene7.20E-03
43GO:0006281: DNA repair9.92E-03
44GO:0006629: lipid metabolic process9.92E-03
45GO:0048364: root development1.02E-02
46GO:0009555: pollen development1.49E-02
47GO:0051301: cell division1.58E-02
48GO:0042742: defense response to bacterium2.46E-02
49GO:0009409: response to cold3.05E-02
50GO:0046686: response to cadmium ion3.37E-02
51GO:0007165: signal transduction4.15E-02
52GO:0009737: response to abscisic acid4.22E-02
53GO:0009793: embryo development ending in seed dormancy4.47E-02
54GO:0016310: phosphorylation4.66E-02
RankGO TermAdjusted P value
1GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity6.71E-06
2GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.04E-05
3GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity5.17E-05
4GO:0010385: double-stranded methylated DNA binding7.23E-05
5GO:0004033: aldo-keto reductase (NADP) activity2.03E-04
6GO:0008171: O-methyltransferase activity3.28E-04
7GO:0047372: acylglycerol lipase activity3.61E-04
8GO:0043424: protein histidine kinase binding6.14E-04
9GO:0004707: MAP kinase activity6.53E-04
10GO:0003713: transcription coactivator activity8.97E-04
11GO:0030276: clathrin binding8.97E-04
12GO:0005355: glucose transmembrane transporter activity9.39E-04
13GO:0015144: carbohydrate transmembrane transporter activity4.37E-03
14GO:0005351: sugar:proton symporter activity4.74E-03
15GO:0008017: microtubule binding4.97E-03
16GO:0008168: methyltransferase activity6.33E-03
17GO:0003924: GTPase activity9.92E-03
18GO:0005525: GTP binding2.12E-02
19GO:0005515: protein binding2.96E-02
20GO:0016491: oxidoreductase activity2.99E-02
21GO:0046983: protein dimerization activity3.02E-02
22GO:0004672: protein kinase activity3.23E-02
23GO:0016787: hydrolase activity4.24E-02
RankGO TermAdjusted P value
1GO:0045334: clathrin-coated endocytic vesicle6.71E-06
2GO:0009524: phragmoplast2.08E-04
3GO:0005765: lysosomal membrane3.61E-04
4GO:0009574: preprophase band4.30E-04
5GO:0009504: cell plate9.82E-04
6GO:0005774: vacuolar membrane1.21E-03
7GO:0005794: Golgi apparatus1.85E-03
8GO:0005802: trans-Golgi network2.05E-03
9GO:0016020: membrane2.26E-03
10GO:0005783: endoplasmic reticulum2.93E-03
11GO:0005874: microtubule7.37E-03
12GO:0005829: cytosol1.13E-02
13GO:0005622: intracellular2.24E-02
14GO:0005768: endosome2.28E-02
15GO:0016021: integral component of membrane3.82E-02
16GO:0009535: chloroplast thylakoid membrane4.37E-02
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Gene type



Gene DE type