GO Enrichment Analysis of Co-expressed Genes with
AT3G54010
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 2 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 3 | GO:0043419: urea catabolic process | 0.00E+00 |
| 4 | GO:0010793: regulation of mRNA export from nucleus | 0.00E+00 |
| 5 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 6 | GO:0010398: xylogalacturonan metabolic process | 0.00E+00 |
| 7 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 8 | GO:2001253: regulation of histone H3-K36 trimethylation | 0.00E+00 |
| 9 | GO:0048482: plant ovule morphogenesis | 1.08E-04 |
| 10 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 1.08E-04 |
| 11 | GO:0006499: N-terminal protein myristoylation | 1.52E-04 |
| 12 | GO:0051258: protein polymerization | 2.52E-04 |
| 13 | GO:0015914: phospholipid transport | 2.52E-04 |
| 14 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 2.52E-04 |
| 15 | GO:0051262: protein tetramerization | 2.52E-04 |
| 16 | GO:0043631: RNA polyadenylation | 2.52E-04 |
| 17 | GO:0050684: regulation of mRNA processing | 2.52E-04 |
| 18 | GO:0042742: defense response to bacterium | 2.82E-04 |
| 19 | GO:0010053: root epidermal cell differentiation | 2.87E-04 |
| 20 | GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening | 4.19E-04 |
| 21 | GO:0032784: regulation of DNA-templated transcription, elongation | 4.19E-04 |
| 22 | GO:0061158: 3'-UTR-mediated mRNA destabilization | 4.19E-04 |
| 23 | GO:0080055: low-affinity nitrate transport | 4.19E-04 |
| 24 | GO:0042780: tRNA 3'-end processing | 4.19E-04 |
| 25 | GO:0046621: negative regulation of organ growth | 4.19E-04 |
| 26 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 4.19E-04 |
| 27 | GO:0045454: cell redox homeostasis | 5.79E-04 |
| 28 | GO:0072583: clathrin-dependent endocytosis | 6.01E-04 |
| 29 | GO:0001676: long-chain fatty acid metabolic process | 6.01E-04 |
| 30 | GO:0000187: activation of MAPK activity | 6.01E-04 |
| 31 | GO:0048194: Golgi vesicle budding | 6.01E-04 |
| 32 | GO:2000038: regulation of stomatal complex development | 7.98E-04 |
| 33 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 7.98E-04 |
| 34 | GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA | 7.98E-04 |
| 35 | GO:0010188: response to microbial phytotoxin | 7.98E-04 |
| 36 | GO:0060548: negative regulation of cell death | 7.98E-04 |
| 37 | GO:0009697: salicylic acid biosynthetic process | 1.01E-03 |
| 38 | GO:0098719: sodium ion import across plasma membrane | 1.01E-03 |
| 39 | GO:0006413: translational initiation | 1.10E-03 |
| 40 | GO:0001731: formation of translation preinitiation complex | 1.23E-03 |
| 41 | GO:0048317: seed morphogenesis | 1.23E-03 |
| 42 | GO:2000037: regulation of stomatal complex patterning | 1.47E-03 |
| 43 | GO:0010310: regulation of hydrogen peroxide metabolic process | 1.47E-03 |
| 44 | GO:0015977: carbon fixation | 1.47E-03 |
| 45 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 1.47E-03 |
| 46 | GO:0000122: negative regulation of transcription from RNA polymerase II promoter | 1.73E-03 |
| 47 | GO:0043090: amino acid import | 1.73E-03 |
| 48 | GO:0032875: regulation of DNA endoreduplication | 2.00E-03 |
| 49 | GO:0009819: drought recovery | 2.00E-03 |
| 50 | GO:0009642: response to light intensity | 2.00E-03 |
| 51 | GO:0006367: transcription initiation from RNA polymerase II promoter | 2.28E-03 |
| 52 | GO:0006002: fructose 6-phosphate metabolic process | 2.28E-03 |
| 53 | GO:0048366: leaf development | 2.54E-03 |
| 54 | GO:0009821: alkaloid biosynthetic process | 2.57E-03 |
| 55 | GO:0046685: response to arsenic-containing substance | 2.57E-03 |
| 56 | GO:0051453: regulation of intracellular pH | 2.88E-03 |
| 57 | GO:0006995: cellular response to nitrogen starvation | 3.20E-03 |
| 58 | GO:0000103: sulfate assimilation | 3.20E-03 |
| 59 | GO:0010629: negative regulation of gene expression | 3.20E-03 |
| 60 | GO:0006364: rRNA processing | 3.43E-03 |
| 61 | GO:0072593: reactive oxygen species metabolic process | 3.53E-03 |
| 62 | GO:0030148: sphingolipid biosynthetic process | 3.53E-03 |
| 63 | GO:0006378: mRNA polyadenylation | 3.53E-03 |
| 64 | GO:0045037: protein import into chloroplast stroma | 3.87E-03 |
| 65 | GO:0015706: nitrate transport | 3.87E-03 |
| 66 | GO:0006807: nitrogen compound metabolic process | 4.23E-03 |
| 67 | GO:0010229: inflorescence development | 4.23E-03 |
| 68 | GO:0010588: cotyledon vascular tissue pattern formation | 4.23E-03 |
| 69 | GO:0006446: regulation of translational initiation | 4.59E-03 |
| 70 | GO:0006397: mRNA processing | 4.68E-03 |
| 71 | GO:0009553: embryo sac development | 4.72E-03 |
| 72 | GO:0070588: calcium ion transmembrane transport | 4.96E-03 |
| 73 | GO:0009742: brassinosteroid mediated signaling pathway | 5.15E-03 |
| 74 | GO:0034976: response to endoplasmic reticulum stress | 5.35E-03 |
| 75 | GO:0030150: protein import into mitochondrial matrix | 5.75E-03 |
| 76 | GO:0010187: negative regulation of seed germination | 5.75E-03 |
| 77 | GO:0000027: ribosomal large subunit assembly | 5.75E-03 |
| 78 | GO:0006366: transcription from RNA polymerase II promoter | 6.56E-03 |
| 79 | GO:0009814: defense response, incompatible interaction | 6.99E-03 |
| 80 | GO:0031348: negative regulation of defense response | 6.99E-03 |
| 81 | GO:0080092: regulation of pollen tube growth | 6.99E-03 |
| 82 | GO:0010227: floral organ abscission | 7.42E-03 |
| 83 | GO:0009561: megagametogenesis | 7.87E-03 |
| 84 | GO:0042391: regulation of membrane potential | 8.79E-03 |
| 85 | GO:0000413: protein peptidyl-prolyl isomerization | 8.79E-03 |
| 86 | GO:0010305: leaf vascular tissue pattern formation | 9.26E-03 |
| 87 | GO:0006662: glycerol ether metabolic process | 9.26E-03 |
| 88 | GO:0045489: pectin biosynthetic process | 9.26E-03 |
| 89 | GO:0048544: recognition of pollen | 9.74E-03 |
| 90 | GO:0006814: sodium ion transport | 9.74E-03 |
| 91 | GO:0006623: protein targeting to vacuole | 1.02E-02 |
| 92 | GO:0010183: pollen tube guidance | 1.02E-02 |
| 93 | GO:0002229: defense response to oomycetes | 1.07E-02 |
| 94 | GO:0010193: response to ozone | 1.07E-02 |
| 95 | GO:0000302: response to reactive oxygen species | 1.07E-02 |
| 96 | GO:0007264: small GTPase mediated signal transduction | 1.12E-02 |
| 97 | GO:0030163: protein catabolic process | 1.18E-02 |
| 98 | GO:0006914: autophagy | 1.23E-02 |
| 99 | GO:0071805: potassium ion transmembrane transport | 1.28E-02 |
| 100 | GO:0051607: defense response to virus | 1.34E-02 |
| 101 | GO:0009615: response to virus | 1.39E-02 |
| 102 | GO:0016126: sterol biosynthetic process | 1.39E-02 |
| 103 | GO:0042128: nitrate assimilation | 1.51E-02 |
| 104 | GO:0006468: protein phosphorylation | 1.61E-02 |
| 105 | GO:0016049: cell growth | 1.62E-02 |
| 106 | GO:0008219: cell death | 1.68E-02 |
| 107 | GO:0006865: amino acid transport | 1.92E-02 |
| 108 | GO:0009867: jasmonic acid mediated signaling pathway | 1.99E-02 |
| 109 | GO:0045087: innate immune response | 1.99E-02 |
| 110 | GO:0034599: cellular response to oxidative stress | 2.05E-02 |
| 111 | GO:0006099: tricarboxylic acid cycle | 2.05E-02 |
| 112 | GO:0006839: mitochondrial transport | 2.18E-02 |
| 113 | GO:0006631: fatty acid metabolic process | 2.25E-02 |
| 114 | GO:0000165: MAPK cascade | 2.73E-02 |
| 115 | GO:0050832: defense response to fungus | 2.81E-02 |
| 116 | GO:0015031: protein transport | 3.03E-02 |
| 117 | GO:0006857: oligopeptide transport | 3.09E-02 |
| 118 | GO:0006417: regulation of translation | 3.17E-02 |
| 119 | GO:0006096: glycolytic process | 3.32E-02 |
| 120 | GO:0009734: auxin-activated signaling pathway | 3.36E-02 |
| 121 | GO:0048367: shoot system development | 3.39E-02 |
| 122 | GO:0009626: plant-type hypersensitive response | 3.47E-02 |
| 123 | GO:0009620: response to fungus | 3.55E-02 |
| 124 | GO:0006810: transport | 3.62E-02 |
| 125 | GO:0009624: response to nematode | 3.78E-02 |
| 126 | GO:0000398: mRNA splicing, via spliceosome | 4.19E-02 |
| 127 | GO:0009058: biosynthetic process | 4.61E-02 |
| 128 | GO:0042744: hydrogen peroxide catabolic process | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009039: urease activity | 0.00E+00 |
| 2 | GO:0004631: phosphomevalonate kinase activity | 0.00E+00 |
| 3 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 4 | GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity | 0.00E+00 |
| 5 | GO:0015370: solute:sodium symporter activity | 0.00E+00 |
| 6 | GO:0000166: nucleotide binding | 5.31E-06 |
| 7 | GO:0032050: clathrin heavy chain binding | 1.08E-04 |
| 8 | GO:0015085: calcium ion transmembrane transporter activity | 1.08E-04 |
| 9 | GO:0045140: inositol phosphoceramide synthase activity | 2.52E-04 |
| 10 | GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters | 2.52E-04 |
| 11 | GO:0001078: transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.52E-04 |
| 12 | GO:0015293: symporter activity | 3.06E-04 |
| 13 | GO:0005524: ATP binding | 3.07E-04 |
| 14 | GO:0043130: ubiquitin binding | 3.57E-04 |
| 15 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 4.19E-04 |
| 16 | GO:0008964: phosphoenolpyruvate carboxylase activity | 4.19E-04 |
| 17 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 4.19E-04 |
| 18 | GO:0016151: nickel cation binding | 4.19E-04 |
| 19 | GO:0033612: receptor serine/threonine kinase binding | 4.33E-04 |
| 20 | GO:0005515: protein binding | 4.74E-04 |
| 21 | GO:0004652: polynucleotide adenylyltransferase activity | 6.01E-04 |
| 22 | GO:0031176: endo-1,4-beta-xylanase activity | 6.01E-04 |
| 23 | GO:0047134: protein-disulfide reductase activity | 6.05E-04 |
| 24 | GO:0004791: thioredoxin-disulfide reductase activity | 7.52E-04 |
| 25 | GO:0015204: urea transmembrane transporter activity | 7.98E-04 |
| 26 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 1.01E-03 |
| 27 | GO:0035252: UDP-xylosyltransferase activity | 1.23E-03 |
| 28 | GO:0003743: translation initiation factor activity | 1.45E-03 |
| 29 | GO:0102391: decanoate--CoA ligase activity | 1.47E-03 |
| 30 | GO:0004012: phospholipid-translocating ATPase activity | 1.47E-03 |
| 31 | GO:0008143: poly(A) binding | 1.73E-03 |
| 32 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.73E-03 |
| 33 | GO:0003872: 6-phosphofructokinase activity | 1.73E-03 |
| 34 | GO:0004708: MAP kinase kinase activity | 2.00E-03 |
| 35 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 2.00E-03 |
| 36 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.17E-03 |
| 37 | GO:0003729: mRNA binding | 2.57E-03 |
| 38 | GO:0016844: strictosidine synthase activity | 2.88E-03 |
| 39 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.97E-03 |
| 40 | GO:0004713: protein tyrosine kinase activity | 3.20E-03 |
| 41 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.43E-03 |
| 42 | GO:0008794: arsenate reductase (glutaredoxin) activity | 3.53E-03 |
| 43 | GO:0001054: RNA polymerase I activity | 3.53E-03 |
| 44 | GO:0015386: potassium:proton antiporter activity | 3.53E-03 |
| 45 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.23E-03 |
| 46 | GO:0005388: calcium-transporting ATPase activity | 4.23E-03 |
| 47 | GO:0000175: 3'-5'-exoribonuclease activity | 4.23E-03 |
| 48 | GO:0004535: poly(A)-specific ribonuclease activity | 4.59E-03 |
| 49 | GO:0004190: aspartic-type endopeptidase activity | 4.96E-03 |
| 50 | GO:0030552: cAMP binding | 4.96E-03 |
| 51 | GO:0030553: cGMP binding | 4.96E-03 |
| 52 | GO:0015035: protein disulfide oxidoreductase activity | 5.01E-03 |
| 53 | GO:0005528: FK506 binding | 5.75E-03 |
| 54 | GO:0003723: RNA binding | 5.77E-03 |
| 55 | GO:0005216: ion channel activity | 6.15E-03 |
| 56 | GO:0008408: 3'-5' exonuclease activity | 6.56E-03 |
| 57 | GO:0004540: ribonuclease activity | 6.56E-03 |
| 58 | GO:0016779: nucleotidyltransferase activity | 6.99E-03 |
| 59 | GO:0016887: ATPase activity | 7.73E-03 |
| 60 | GO:0003756: protein disulfide isomerase activity | 7.87E-03 |
| 61 | GO:0003727: single-stranded RNA binding | 7.87E-03 |
| 62 | GO:0005249: voltage-gated potassium channel activity | 8.79E-03 |
| 63 | GO:0030551: cyclic nucleotide binding | 8.79E-03 |
| 64 | GO:0016853: isomerase activity | 9.74E-03 |
| 65 | GO:0004672: protein kinase activity | 9.82E-03 |
| 66 | GO:0015385: sodium:proton antiporter activity | 1.18E-02 |
| 67 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.18E-02 |
| 68 | GO:0016301: kinase activity | 1.18E-02 |
| 69 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.28E-02 |
| 70 | GO:0008375: acetylglucosaminyltransferase activity | 1.51E-02 |
| 71 | GO:0005516: calmodulin binding | 1.54E-02 |
| 72 | GO:0004721: phosphoprotein phosphatase activity | 1.56E-02 |
| 73 | GO:0003993: acid phosphatase activity | 2.05E-02 |
| 74 | GO:0004722: protein serine/threonine phosphatase activity | 2.12E-02 |
| 75 | GO:0003824: catalytic activity | 2.52E-02 |
| 76 | GO:0005198: structural molecule activity | 2.59E-02 |
| 77 | GO:0015171: amino acid transmembrane transporter activity | 3.17E-02 |
| 78 | GO:0016874: ligase activity | 3.63E-02 |
| 79 | GO:0008026: ATP-dependent helicase activity | 3.94E-02 |
| 80 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.52E-02 |
| 81 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005674: transcription factor TFIIF complex | 0.00E+00 |
| 2 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.95E-05 |
| 3 | GO:0030014: CCR4-NOT complex | 1.08E-04 |
| 4 | GO:0005886: plasma membrane | 1.90E-04 |
| 5 | GO:0005794: Golgi apparatus | 7.75E-04 |
| 6 | GO:0005802: trans-Golgi network | 8.55E-04 |
| 7 | GO:0005945: 6-phosphofructokinase complex | 1.01E-03 |
| 8 | GO:0005768: endosome | 1.07E-03 |
| 9 | GO:0016282: eukaryotic 43S preinitiation complex | 1.23E-03 |
| 10 | GO:0005887: integral component of plasma membrane | 1.25E-03 |
| 11 | GO:0033290: eukaryotic 48S preinitiation complex | 1.47E-03 |
| 12 | GO:0031902: late endosome membrane | 2.36E-03 |
| 13 | GO:0010494: cytoplasmic stress granule | 2.57E-03 |
| 14 | GO:0005736: DNA-directed RNA polymerase I complex | 2.57E-03 |
| 15 | GO:0030125: clathrin vesicle coat | 3.20E-03 |
| 16 | GO:0017119: Golgi transport complex | 3.20E-03 |
| 17 | GO:0010008: endosome membrane | 4.18E-03 |
| 18 | GO:0005834: heterotrimeric G-protein complex | 4.31E-03 |
| 19 | GO:0005829: cytosol | 5.06E-03 |
| 20 | GO:0043234: protein complex | 5.35E-03 |
| 21 | GO:0005737: cytoplasm | 5.48E-03 |
| 22 | GO:0005773: vacuole | 7.80E-03 |
| 23 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 7.87E-03 |
| 24 | GO:0000139: Golgi membrane | 8.68E-03 |
| 25 | GO:0016021: integral component of membrane | 1.16E-02 |
| 26 | GO:0032580: Golgi cisterna membrane | 1.23E-02 |
| 27 | GO:0000932: P-body | 1.39E-02 |
| 28 | GO:0005788: endoplasmic reticulum lumen | 1.45E-02 |
| 29 | GO:0019005: SCF ubiquitin ligase complex | 1.68E-02 |
| 30 | GO:0005743: mitochondrial inner membrane | 2.22E-02 |
| 31 | GO:0005681: spliceosomal complex | 3.32E-02 |
| 32 | GO:0016607: nuclear speck | 3.39E-02 |
| 33 | GO:0005774: vacuolar membrane | 3.52E-02 |
| 34 | GO:0005783: endoplasmic reticulum | 3.67E-02 |
| 35 | GO:0016020: membrane | 3.67E-02 |
| 36 | GO:0009706: chloroplast inner membrane | 3.78E-02 |
| 37 | GO:0005789: endoplasmic reticulum membrane | 3.80E-02 |
| 38 | GO:0005730: nucleolus | 4.31E-02 |
| 39 | GO:0005623: cell | 4.52E-02 |
| 40 | GO:0005777: peroxisome | 4.84E-02 |