co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0030149: sphingolipid catabolic process	0.00E+00
3	GO:0006793: phosphorus metabolic process	0.00E+00
4	GO:0072722: response to amitrole	0.00E+00
5	GO:0070212: protein poly-ADP-ribosylation	0.00E+00
6	GO:0045792: negative regulation of cell size	0.00E+00
7	GO:0009617: response to bacterium	1.82E-06
8	GO:0009816: defense response to bacterium, incompatible interaction	5.60E-06
9	GO:0034976: response to endoplasmic reticulum stress	1.40E-05
10	GO:0009814: defense response, incompatible interaction	2.69E-05
11	GO:0030026: cellular manganese ion homeostasis	6.38E-05
12	GO:0009626: plant-type hypersensitive response	6.79E-05
13	GO:0006979: response to oxidative stress	8.96E-05
14	GO:0044376: RNA polymerase II complex import to nucleus	1.27E-04
15	GO:0006805: xenobiotic metabolic process	1.27E-04
16	GO:1990022: RNA polymerase III complex localization to nucleus	1.27E-04
17	GO:0006457: protein folding	1.74E-04
18	GO:0019752: carboxylic acid metabolic process	2.94E-04
19	GO:1902000: homogentisate catabolic process	2.94E-04
20	GO:0051592: response to calcium ion	2.94E-04
21	GO:0071395: cellular response to jasmonic acid stimulus	2.94E-04
22	GO:2000072: regulation of defense response to fungus, incompatible interaction	2.94E-04
23	GO:0002237: response to molecule of bacterial origin	3.20E-04
24	GO:0010167: response to nitrate	3.60E-04
25	GO:0042343: indole glucosinolate metabolic process	3.60E-04
26	GO:0006468: protein phosphorylation	3.81E-04
27	GO:0009863: salicylic acid mediated signaling pathway	4.45E-04
28	GO:0042742: defense response to bacterium	4.56E-04
29	GO:0010581: regulation of starch biosynthetic process	4.86E-04
30	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	4.86E-04
31	GO:0055074: calcium ion homeostasis	4.86E-04
32	GO:0010351: lithium ion transport	4.86E-04
33	GO:0009410: response to xenobiotic stimulus	4.86E-04
34	GO:0010272: response to silver ion	4.86E-04
35	GO:0009072: aromatic amino acid family metabolic process	4.86E-04
36	GO:0048281: inflorescence morphogenesis	4.86E-04
37	GO:0010200: response to chitin	6.55E-04
38	GO:0046777: protein autophosphorylation	6.89E-04
39	GO:0033014: tetrapyrrole biosynthetic process	6.95E-04
40	GO:0071323: cellular response to chitin	6.95E-04
41	GO:0006882: cellular zinc ion homeostasis	6.95E-04
42	GO:0001676: long-chain fatty acid metabolic process	6.95E-04
43	GO:0006515: misfolded or incompletely synthesized protein catabolic process	6.95E-04
44	GO:0019438: aromatic compound biosynthetic process	6.95E-04
45	GO:0045454: cell redox homeostasis	8.16E-04
46	GO:0010188: response to microbial phytotoxin	9.21E-04
47	GO:0080142: regulation of salicylic acid biosynthetic process	9.21E-04
48	GO:0045088: regulation of innate immune response	9.21E-04
49	GO:0006621: protein retention in ER lumen	9.21E-04
50	GO:0010193: response to ozone	1.06E-03
51	GO:0009697: salicylic acid biosynthetic process	1.16E-03
52	GO:0046283: anthocyanin-containing compound metabolic process	1.16E-03
53	GO:0006564: L-serine biosynthetic process	1.16E-03
54	GO:0009790: embryo development	1.28E-03
55	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.43E-03
56	GO:0010405: arabinogalactan protein metabolic process	1.43E-03
57	GO:0006751: glutathione catabolic process	1.43E-03
58	GO:0006952: defense response	1.50E-03
59	GO:0010555: response to mannitol	1.71E-03
60	GO:2000067: regulation of root morphogenesis	1.71E-03
61	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.71E-03
62	GO:0007166: cell surface receptor signaling pathway	1.87E-03
63	GO:0006880: intracellular sequestering of iron ion	2.01E-03
64	GO:0071446: cellular response to salicylic acid stimulus	2.01E-03
65	GO:1900056: negative regulation of leaf senescence	2.01E-03
66	GO:0009407: toxin catabolic process	2.17E-03
67	GO:0045087: innate immune response	2.48E-03
68	GO:0007186: G-protein coupled receptor signaling pathway	2.65E-03
69	GO:0010204: defense response signaling pathway, resistance gene-independent	2.65E-03
70	GO:0043562: cellular response to nitrogen levels	2.65E-03
71	GO:0009699: phenylpropanoid biosynthetic process	2.65E-03
72	GO:0006783: heme biosynthetic process	3.00E-03
73	GO:0010112: regulation of systemic acquired resistance	3.00E-03
74	GO:0006189: 'de novo' IMP biosynthetic process	3.00E-03
75	GO:0009056: catabolic process	3.00E-03
76	GO:0046685: response to arsenic-containing substance	3.00E-03
77	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.36E-03
78	GO:0043067: regulation of programmed cell death	3.36E-03
79	GO:0030042: actin filament depolymerization	3.36E-03
80	GO:0009636: response to toxic substance	3.58E-03
81	GO:0055062: phosphate ion homeostasis	3.73E-03
82	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.73E-03
83	GO:0006032: chitin catabolic process	3.73E-03
84	GO:0016192: vesicle-mediated transport	3.85E-03
85	GO:0000272: polysaccharide catabolic process	4.12E-03
86	GO:0009750: response to fructose	4.12E-03
87	GO:0046686: response to cadmium ion	4.16E-03
88	GO:0015706: nitrate transport	4.52E-03
89	GO:0071365: cellular response to auxin stimulus	4.52E-03
90	GO:0007034: vacuolar transport	5.36E-03
91	GO:0009887: animal organ morphogenesis	5.36E-03
92	GO:0046688: response to copper ion	5.80E-03
93	GO:0070588: calcium ion transmembrane transport	5.80E-03
94	GO:0018105: peptidyl-serine phosphorylation	6.27E-03
95	GO:0006825: copper ion transport	7.19E-03
96	GO:0016575: histone deacetylation	7.19E-03
97	GO:0006874: cellular calcium ion homeostasis	7.19E-03
98	GO:0016998: cell wall macromolecule catabolic process	7.68E-03
99	GO:0098542: defense response to other organism	7.68E-03
100	GO:0007005: mitochondrion organization	8.18E-03
101	GO:0071456: cellular response to hypoxia	8.18E-03
102	GO:0009411: response to UV	8.69E-03
103	GO:0009625: response to insect	8.69E-03
104	GO:0040008: regulation of growth	1.00E-02
105	GO:0042631: cellular response to water deprivation	1.03E-02
106	GO:0010150: leaf senescence	1.05E-02
107	GO:0006520: cellular amino acid metabolic process	1.09E-02
108	GO:0006662: glycerol ether metabolic process	1.09E-02
109	GO:0048868: pollen tube development	1.09E-02
110	GO:0006814: sodium ion transport	1.14E-02
111	GO:0009646: response to absence of light	1.14E-02
112	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.18E-02
113	GO:0009749: response to glucose	1.20E-02
114	GO:0000302: response to reactive oxygen species	1.26E-02
115	GO:0006891: intra-Golgi vesicle-mediated transport	1.26E-02
116	GO:0009611: response to wounding	1.26E-02
117	GO:0035556: intracellular signal transduction	1.31E-02
118	GO:0006508: proteolysis	1.35E-02
119	GO:0071281: cellular response to iron ion	1.38E-02
120	GO:0030163: protein catabolic process	1.38E-02
121	GO:0009567: double fertilization forming a zygote and endosperm	1.44E-02
122	GO:0051607: defense response to virus	1.57E-02
123	GO:0009615: response to virus	1.63E-02
124	GO:0009627: systemic acquired resistance	1.77E-02
125	GO:0042128: nitrate assimilation	1.77E-02
126	GO:0006511: ubiquitin-dependent protein catabolic process	1.81E-02
127	GO:0015995: chlorophyll biosynthetic process	1.83E-02
128	GO:0008219: cell death	1.97E-02
129	GO:0080167: response to karrikin	2.03E-02
130	GO:0007275: multicellular organism development	2.14E-02
131	GO:0010043: response to zinc ion	2.19E-02
132	GO:0044550: secondary metabolite biosynthetic process	2.21E-02
133	GO:0034599: cellular response to oxidative stress	2.41E-02
134	GO:0009737: response to abscisic acid	2.41E-02
135	GO:0006886: intracellular protein transport	2.51E-02
136	GO:0006631: fatty acid metabolic process	2.64E-02
137	GO:0008283: cell proliferation	2.80E-02
138	GO:0009744: response to sucrose	2.80E-02
139	GO:0051707: response to other organism	2.80E-02
140	GO:0032259: methylation	2.87E-02
141	GO:0009965: leaf morphogenesis	3.04E-02
142	GO:0006812: cation transport	3.29E-02
143	GO:0009846: pollen germination	3.29E-02
144	GO:0006486: protein glycosylation	3.46E-02
145	GO:0051603: proteolysis involved in cellular protein catabolic process	3.54E-02
146	GO:0009909: regulation of flower development	3.72E-02
147	GO:0048316: seed development	3.98E-02
148	GO:0016569: covalent chromatin modification	4.26E-02
149	GO:0009553: embryo sac development	4.35E-02
150	GO:0009624: response to nematode	4.44E-02
151	GO:0006396: RNA processing	4.53E-02
152	GO:0009651: response to salt stress	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0005046: KDEL sequence binding	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
4	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
5	GO:0003756: protein disulfide isomerase activity	3.55E-05
6	GO:0005524: ATP binding	5.90E-05
7	GO:0004325: ferrochelatase activity	1.27E-04
8	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	1.27E-04
9	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.27E-04
10	GO:0070361: mitochondrial light strand promoter anti-sense binding	2.94E-04
11	GO:0080041: ADP-ribose pyrophosphohydrolase activity	2.94E-04
12	GO:0010296: prenylcysteine methylesterase activity	2.94E-04
13	GO:0004617: phosphoglycerate dehydrogenase activity	2.94E-04
14	GO:0017110: nucleoside-diphosphatase activity	2.94E-04
15	GO:0008061: chitin binding	3.60E-04
16	GO:0031683: G-protein beta/gamma-subunit complex binding	4.86E-04
17	GO:0003840: gamma-glutamyltransferase activity	4.86E-04
18	GO:0036374: glutathione hydrolase activity	4.86E-04
19	GO:0001664: G-protein coupled receptor binding	4.86E-04
20	GO:0008430: selenium binding	4.86E-04
21	GO:0016531: copper chaperone activity	4.86E-04
22	GO:0004298: threonine-type endopeptidase activity	5.39E-04
23	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	6.95E-04
24	GO:0051082: unfolded protein binding	8.05E-04
25	GO:0015368: calcium:cation antiporter activity	9.21E-04
26	GO:0015369: calcium:proton antiporter activity	9.21E-04
27	GO:0046923: ER retention sequence binding	9.21E-04
28	GO:0005516: calmodulin binding	1.14E-03
29	GO:0047631: ADP-ribose diphosphatase activity	1.16E-03
30	GO:0000210: NAD+ diphosphatase activity	1.43E-03
31	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.43E-03
32	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.43E-03
33	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.45E-03
34	GO:0005509: calcium ion binding	1.66E-03
35	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.69E-03
36	GO:0102391: decanoate--CoA ligase activity	1.71E-03
37	GO:0004683: calmodulin-dependent protein kinase activity	1.78E-03
38	GO:0008320: protein transmembrane transporter activity	2.01E-03
39	GO:0004467: long-chain fatty acid-CoA ligase activity	2.01E-03
40	GO:0016831: carboxy-lyase activity	2.01E-03
41	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.01E-03
42	GO:0015491: cation:cation antiporter activity	2.32E-03
43	GO:0035064: methylated histone binding	2.32E-03
44	GO:0008135: translation factor activity, RNA binding	2.65E-03
45	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.65E-03
46	GO:0004364: glutathione transferase activity	3.06E-03
47	GO:0016301: kinase activity	3.30E-03
48	GO:0005384: manganese ion transmembrane transporter activity	3.36E-03
49	GO:0015112: nitrate transmembrane transporter activity	3.36E-03
50	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.36E-03
51	GO:0005381: iron ion transmembrane transporter activity	3.36E-03
52	GO:0008233: peptidase activity	3.53E-03
53	GO:0004568: chitinase activity	3.73E-03
54	GO:0008171: O-methyltransferase activity	3.73E-03
55	GO:0051287: NAD binding	3.85E-03
56	GO:0008378: galactosyltransferase activity	4.52E-03
57	GO:0004871: signal transducer activity	4.81E-03
58	GO:0005262: calcium channel activity	4.93E-03
59	GO:0005388: calcium-transporting ATPase activity	4.93E-03
60	GO:0008083: growth factor activity	5.36E-03
61	GO:0003712: transcription cofactor activity	5.80E-03
62	GO:0004190: aspartic-type endopeptidase activity	5.80E-03
63	GO:0004407: histone deacetylase activity	6.71E-03
64	GO:0016758: transferase activity, transferring hexosyl groups	7.42E-03
65	GO:0004176: ATP-dependent peptidase activity	7.68E-03
66	GO:0004252: serine-type endopeptidase activity	8.46E-03
67	GO:0047134: protein-disulfide reductase activity	9.75E-03
68	GO:0004674: protein serine/threonine kinase activity	1.05E-02
69	GO:0004527: exonuclease activity	1.09E-02
70	GO:0004791: thioredoxin-disulfide reductase activity	1.14E-02
71	GO:0016853: isomerase activity	1.14E-02
72	GO:0004872: receptor activity	1.20E-02
73	GO:0042802: identical protein binding	1.34E-02
74	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.38E-02
75	GO:0004672: protein kinase activity	1.38E-02
76	GO:0008168: methyltransferase activity	1.57E-02
77	GO:0016597: amino acid binding	1.57E-02
78	GO:0030246: carbohydrate binding	1.79E-02
79	GO:0043531: ADP binding	1.79E-02
80	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.90E-02
81	GO:0008236: serine-type peptidase activity	1.90E-02
82	GO:0005515: protein binding	2.08E-02
83	GO:0004222: metalloendopeptidase activity	2.11E-02
84	GO:0061630: ubiquitin protein ligase activity	2.13E-02
85	GO:0003746: translation elongation factor activity	2.33E-02
86	GO:0016787: hydrolase activity	2.43E-02
87	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.48E-02
88	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.62E-02
89	GO:0051537: 2 iron, 2 sulfur cluster binding	2.96E-02
90	GO:0003924: GTPase activity	2.99E-02
91	GO:0016298: lipase activity	3.54E-02
92	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.16E-02
93	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.16E-02
94	GO:0003779: actin binding	4.35E-02
95	GO:0015035: protein disulfide oxidoreductase activity	4.53E-02
96	GO:0016887: ATPase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005783: endoplasmic reticulum	9.29E-12
3	GO:0005788: endoplasmic reticulum lumen	1.33E-07
4	GO:0005886: plasma membrane	1.17E-05
5	GO:0005801: cis-Golgi network	4.74E-05
6	GO:0005789: endoplasmic reticulum membrane	2.60E-04
7	GO:0031012: extracellular matrix	2.83E-04
8	GO:0030134: ER to Golgi transport vesicle	2.94E-04
9	GO:0005839: proteasome core complex	5.39E-04
10	GO:0030660: Golgi-associated vesicle membrane	9.21E-04
11	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	9.21E-04
12	GO:0010168: ER body	1.43E-03
13	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.32E-03
14	GO:0000326: protein storage vacuole	2.65E-03
15	GO:0019773: proteasome core complex, alpha-subunit complex	2.65E-03
16	GO:0005740: mitochondrial envelope	3.73E-03
17	GO:0005765: lysosomal membrane	4.12E-03
18	GO:0000502: proteasome complex	4.29E-03
19	GO:0005829: cytosol	5.05E-03
20	GO:0005774: vacuolar membrane	5.30E-03
21	GO:0005750: mitochondrial respiratory chain complex III	5.36E-03
22	GO:0005834: heterotrimeric G-protein complex	5.39E-03
23	GO:0005795: Golgi stack	5.80E-03
24	GO:0005758: mitochondrial intermembrane space	6.71E-03
25	GO:0005741: mitochondrial outer membrane	7.68E-03
26	GO:0015629: actin cytoskeleton	8.69E-03
27	GO:0030529: intracellular ribonucleoprotein complex	1.63E-02
28	GO:0019005: SCF ubiquitin ligase complex	1.97E-02
29	GO:0005622: intracellular	2.53E-02
30	GO:0016021: integral component of membrane	3.40E-02
31	GO:0005773: vacuole	3.41E-02
32	GO:0009505: plant-type cell wall	3.94E-02
33	GO:0009706: chloroplast inner membrane	4.44E-02