co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
2	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
3	GO:0051553: flavone biosynthetic process	0.00E+00
4	GO:0072321: chaperone-mediated protein transport	0.00E+00
5	GO:0006468: protein phosphorylation	1.92E-06
6	GO:0006517: protein deglycosylation	7.70E-06
7	GO:0000187: activation of MAPK activity	1.76E-05
8	GO:0060548: negative regulation of cell death	3.23E-05
9	GO:0034976: response to endoplasmic reticulum stress	4.33E-05
10	GO:0018279: protein N-linked glycosylation via asparagine	5.18E-05
11	GO:0042742: defense response to bacterium	1.20E-04
12	GO:0007166: cell surface receptor signaling pathway	1.27E-04
13	GO:0043687: post-translational protein modification	2.11E-04
14	GO:0002143: tRNA wobble position uridine thiolation	2.11E-04
15	GO:0006680: glucosylceramide catabolic process	2.11E-04
16	GO:0060862: negative regulation of floral organ abscission	2.11E-04
17	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	2.11E-04
18	GO:0000077: DNA damage checkpoint	2.11E-04
19	GO:0006422: aspartyl-tRNA aminoacylation	2.11E-04
20	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.71E-04
21	GO:0031349: positive regulation of defense response	4.71E-04
22	GO:0051258: protein polymerization	4.71E-04
23	GO:0051252: regulation of RNA metabolic process	4.71E-04
24	GO:0002221: pattern recognition receptor signaling pathway	4.71E-04
25	GO:0015914: phospholipid transport	4.71E-04
26	GO:2000072: regulation of defense response to fungus, incompatible interaction	4.71E-04
27	GO:0080181: lateral root branching	4.71E-04
28	GO:0040020: regulation of meiotic nuclear division	4.71E-04
29	GO:1900140: regulation of seedling development	7.67E-04
30	GO:0045039: protein import into mitochondrial inner membrane	7.67E-04
31	GO:0015695: organic cation transport	7.67E-04
32	GO:0006487: protein N-linked glycosylation	8.76E-04
33	GO:0006516: glycoprotein catabolic process	1.09E-03
34	GO:0015696: ammonium transport	1.09E-03
35	GO:0071323: cellular response to chitin	1.09E-03
36	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.09E-03
37	GO:0048194: Golgi vesicle budding	1.09E-03
38	GO:0002239: response to oomycetes	1.09E-03
39	GO:0009814: defense response, incompatible interaction	1.15E-03
40	GO:0030433: ubiquitin-dependent ERAD pathway	1.15E-03
41	GO:0010227: floral organ abscission	1.25E-03
42	GO:0006221: pyrimidine nucleotide biosynthetic process	1.45E-03
43	GO:0000460: maturation of 5.8S rRNA	1.45E-03
44	GO:2000038: regulation of stomatal complex development	1.45E-03
45	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.45E-03
46	GO:0010188: response to microbial phytotoxin	1.45E-03
47	GO:0080142: regulation of salicylic acid biosynthetic process	1.45E-03
48	GO:0072488: ammonium transmembrane transport	1.45E-03
49	GO:0010197: polar nucleus fusion	1.71E-03
50	GO:0080167: response to karrikin	1.80E-03
51	GO:0031365: N-terminal protein amino acid modification	1.85E-03
52	GO:0045116: protein neddylation	1.85E-03
53	GO:0016192: vesicle-mediated transport	1.95E-03
54	GO:0006623: protein targeting to vacuole	1.97E-03
55	GO:0060918: auxin transport	2.28E-03
56	GO:0047484: regulation of response to osmotic stress	2.28E-03
57	GO:0010942: positive regulation of cell death	2.28E-03
58	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.28E-03
59	GO:0000470: maturation of LSU-rRNA	2.28E-03
60	GO:0045454: cell redox homeostasis	2.37E-03
61	GO:0030163: protein catabolic process	2.39E-03
62	GO:0009612: response to mechanical stimulus	2.74E-03
63	GO:0006694: steroid biosynthetic process	2.74E-03
64	GO:2000037: regulation of stomatal complex patterning	2.74E-03
65	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.74E-03
66	GO:0000911: cytokinesis by cell plate formation	2.74E-03
67	GO:0015031: protein transport	3.02E-03
68	GO:0009751: response to salicylic acid	3.20E-03
69	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.23E-03
70	GO:0043090: amino acid import	3.23E-03
71	GO:0071446: cellular response to salicylic acid stimulus	3.23E-03
72	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.74E-03
73	GO:0006491: N-glycan processing	3.74E-03
74	GO:0006102: isocitrate metabolic process	3.74E-03
75	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.29E-03
76	GO:0009699: phenylpropanoid biosynthetic process	4.29E-03
77	GO:0006002: fructose 6-phosphate metabolic process	4.29E-03
78	GO:0006499: N-terminal protein myristoylation	4.35E-03
79	GO:0010332: response to gamma radiation	4.85E-03
80	GO:0046685: response to arsenic-containing substance	4.85E-03
81	GO:0045087: innate immune response	4.99E-03
82	GO:0010205: photoinhibition	5.44E-03
83	GO:0043067: regulation of programmed cell death	5.44E-03
84	GO:0050832: defense response to fungus	5.56E-03
85	GO:0000103: sulfate assimilation	6.06E-03
86	GO:0006032: chitin catabolic process	6.06E-03
87	GO:0043069: negative regulation of programmed cell death	6.06E-03
88	GO:0019684: photosynthesis, light reaction	6.69E-03
89	GO:0071365: cellular response to auxin stimulus	7.36E-03
90	GO:0000165: MAPK cascade	7.79E-03
91	GO:0031347: regulation of defense response	7.79E-03
92	GO:0010102: lateral root morphogenesis	8.04E-03
93	GO:0006626: protein targeting to mitochondrion	8.04E-03
94	GO:0010229: inflorescence development	8.04E-03
95	GO:0006829: zinc II ion transport	8.04E-03
96	GO:0006952: defense response	8.24E-03
97	GO:0002237: response to molecule of bacterial origin	8.75E-03
98	GO:0070588: calcium ion transmembrane transport	9.48E-03
99	GO:0010053: root epidermal cell differentiation	9.48E-03
100	GO:0042343: indole glucosinolate metabolic process	9.48E-03
101	GO:0044550: secondary metabolite biosynthetic process	9.86E-03
102	GO:0009626: plant-type hypersensitive response	1.09E-02
103	GO:0000027: ribosomal large subunit assembly	1.10E-02
104	GO:0009620: response to fungus	1.13E-02
105	GO:0006457: protein folding	1.15E-02
106	GO:0006886: intracellular protein transport	1.16E-02
107	GO:0016575: histone deacetylation	1.18E-02
108	GO:0006874: cellular calcium ion homeostasis	1.18E-02
109	GO:0016998: cell wall macromolecule catabolic process	1.26E-02
110	GO:0015992: proton transport	1.26E-02
111	GO:0098542: defense response to other organism	1.26E-02
112	GO:0007131: reciprocal meiotic recombination	1.34E-02
113	GO:0031348: negative regulation of defense response	1.34E-02
114	GO:0009306: protein secretion	1.52E-02
115	GO:0006508: proteolysis	1.68E-02
116	GO:0042391: regulation of membrane potential	1.70E-02
117	GO:0008033: tRNA processing	1.70E-02
118	GO:0010051: xylem and phloem pattern formation	1.70E-02
119	GO:0006662: glycerol ether metabolic process	1.79E-02
120	GO:0061025: membrane fusion	1.88E-02
121	GO:0010183: pollen tube guidance	1.98E-02
122	GO:0002229: defense response to oomycetes	2.08E-02
123	GO:0010193: response to ozone	2.08E-02
124	GO:0000302: response to reactive oxygen species	2.08E-02
125	GO:0010252: auxin homeostasis	2.38E-02
126	GO:0006470: protein dephosphorylation	2.45E-02
127	GO:0009617: response to bacterium	2.56E-02
128	GO:0009735: response to cytokinin	2.68E-02
129	GO:0009615: response to virus	2.70E-02
130	GO:0016126: sterol biosynthetic process	2.70E-02
131	GO:0009627: systemic acquired resistance	2.92E-02
132	GO:0008219: cell death	3.27E-02
133	GO:0010311: lateral root formation	3.38E-02
134	GO:0009813: flavonoid biosynthetic process	3.38E-02
135	GO:0009631: cold acclimation	3.62E-02
136	GO:0010119: regulation of stomatal movement	3.62E-02
137	GO:0010043: response to zinc ion	3.62E-02
138	GO:0006865: amino acid transport	3.74E-02
139	GO:0006810: transport	3.95E-02
140	GO:0034599: cellular response to oxidative stress	3.99E-02
141	GO:0006099: tricarboxylic acid cycle	3.99E-02
142	GO:0010200: response to chitin	4.24E-02
143	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.24E-02
144	GO:0051707: response to other organism	4.63E-02
145	GO:0008643: carbohydrate transport	4.89E-02
146	GO:0009644: response to high light intensity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0061605: molybdopterin-synthase adenylyltransferase activity	0.00E+00
2	GO:0000247: C-8 sterol isomerase activity	0.00E+00
3	GO:0047750: cholestenol delta-isomerase activity	0.00E+00
4	GO:0033759: flavone synthase activity	0.00E+00
5	GO:0061604: molybdopterin-synthase sulfurtransferase activity	0.00E+00
6	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
7	GO:0004164: diphthine synthase activity	0.00E+00
8	GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity	0.00E+00
9	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.25E-09
10	GO:0004576: oligosaccharyl transferase activity	1.69E-07
11	GO:0004190: aspartic-type endopeptidase activity	7.88E-07
12	GO:0016301: kinase activity	2.96E-06
13	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.28E-06
14	GO:0008641: small protein activating enzyme activity	5.18E-05
15	GO:0003756: protein disulfide isomerase activity	1.04E-04
16	GO:0004708: MAP kinase kinase activity	1.78E-04
17	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.11E-04
18	GO:0004348: glucosylceramidase activity	2.11E-04
19	GO:0015085: calcium ion transmembrane transporter activity	2.11E-04
20	GO:0004815: aspartate-tRNA ligase activity	2.11E-04
21	GO:0004674: protein serine/threonine kinase activity	2.82E-04
22	GO:0005524: ATP binding	3.19E-04
23	GO:0008428: ribonuclease inhibitor activity	4.71E-04
24	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	4.71E-04
25	GO:0019781: NEDD8 activating enzyme activity	4.71E-04
26	GO:0043021: ribonucleoprotein complex binding	4.71E-04
27	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.67E-04
28	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.08E-04
29	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	7.67E-04
30	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	7.67E-04
31	GO:0033612: receptor serine/threonine kinase binding	1.05E-03
32	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.09E-03
33	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.09E-03
34	GO:0004792: thiosulfate sulfurtransferase activity	1.09E-03
35	GO:0008948: oxaloacetate decarboxylase activity	1.85E-03
36	GO:0000166: nucleotide binding	1.93E-03
37	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.28E-03
38	GO:0008519: ammonium transmembrane transporter activity	2.28E-03
39	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.70E-03
40	GO:0004012: phospholipid-translocating ATPase activity	2.74E-03
41	GO:0004656: procollagen-proline 4-dioxygenase activity	2.74E-03
42	GO:0003872: 6-phosphofructokinase activity	3.23E-03
43	GO:0008320: protein transmembrane transporter activity	3.23E-03
44	GO:0008235: metalloexopeptidase activity	3.23E-03
45	GO:0004427: inorganic diphosphatase activity	3.23E-03
46	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.23E-03
47	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.94E-03
48	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.29E-03
49	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.99E-03
50	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.44E-03
51	GO:0046872: metal ion binding	5.91E-03
52	GO:0004713: protein tyrosine kinase activity	6.06E-03
53	GO:0004568: chitinase activity	6.06E-03
54	GO:0004177: aminopeptidase activity	6.69E-03
55	GO:0005388: calcium-transporting ATPase activity	8.04E-03
56	GO:0008061: chitin binding	9.48E-03
57	GO:0003712: transcription cofactor activity	9.48E-03
58	GO:0005217: intracellular ligand-gated ion channel activity	9.48E-03
59	GO:0004970: ionotropic glutamate receptor activity	9.48E-03
60	GO:0030552: cAMP binding	9.48E-03
61	GO:0030553: cGMP binding	9.48E-03
62	GO:0031418: L-ascorbic acid binding	1.10E-02
63	GO:0004407: histone deacetylase activity	1.10E-02
64	GO:0005216: ion channel activity	1.18E-02
65	GO:0008324: cation transmembrane transporter activity	1.18E-02
66	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.23E-02
67	GO:0004672: protein kinase activity	1.30E-02
68	GO:0008514: organic anion transmembrane transporter activity	1.52E-02
69	GO:0047134: protein-disulfide reductase activity	1.61E-02
70	GO:0005249: voltage-gated potassium channel activity	1.70E-02
71	GO:0030551: cyclic nucleotide binding	1.70E-02
72	GO:0046873: metal ion transmembrane transporter activity	1.79E-02
73	GO:0030276: clathrin binding	1.79E-02
74	GO:0008565: protein transporter activity	1.86E-02
75	GO:0010181: FMN binding	1.88E-02
76	GO:0004791: thioredoxin-disulfide reductase activity	1.88E-02
77	GO:0005506: iron ion binding	2.20E-02
78	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.28E-02
79	GO:0004806: triglyceride lipase activity	3.04E-02
80	GO:0030247: polysaccharide binding	3.04E-02
81	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.04E-02
82	GO:0008168: methyltransferase activity	3.20E-02
83	GO:0000287: magnesium ion binding	3.26E-02
84	GO:0003746: translation elongation factor activity	3.86E-02
85	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.11E-02
86	GO:0051539: 4 iron, 4 sulfur cluster binding	4.24E-02
87	GO:0005515: protein binding	4.45E-02
88	GO:0019825: oxygen binding	4.62E-02
89	GO:0005484: SNAP receptor activity	4.63E-02
90	GO:0005516: calmodulin binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0016021: integral component of membrane	1.57E-10
4	GO:0005783: endoplasmic reticulum	5.99E-10
5	GO:0008250: oligosaccharyltransferase complex	1.25E-09
6	GO:0005886: plasma membrane	1.60E-08
7	GO:0005788: endoplasmic reticulum lumen	2.40E-05
8	GO:0030665: clathrin-coated vesicle membrane	3.21E-04
9	GO:0017119: Golgi transport complex	3.76E-04
10	GO:0005789: endoplasmic reticulum membrane	3.78E-04
11	GO:0005794: Golgi apparatus	4.63E-04
12	GO:0070545: PeBoW complex	4.71E-04
13	GO:0005774: vacuolar membrane	9.33E-04
14	GO:0005887: integral component of plasma membrane	1.21E-03
15	GO:0030660: Golgi-associated vesicle membrane	1.45E-03
16	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.45E-03
17	GO:0005945: 6-phosphofructokinase complex	1.85E-03
18	GO:0032580: Golgi cisterna membrane	2.54E-03
19	GO:0016020: membrane	2.88E-03
20	GO:0009505: plant-type cell wall	2.94E-03
21	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.23E-03
22	GO:0030687: preribosome, large subunit precursor	3.23E-03
23	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.74E-03
24	GO:0030131: clathrin adaptor complex	3.74E-03
25	GO:0000326: protein storage vacuole	4.29E-03
26	GO:0005802: trans-Golgi network	4.42E-03
27	GO:0031902: late endosome membrane	5.93E-03
28	GO:0005765: lysosomal membrane	6.69E-03
29	GO:0005773: vacuole	7.44E-03
30	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.58E-03
31	GO:0005750: mitochondrial respiratory chain complex III	8.75E-03
32	GO:0005758: mitochondrial intermembrane space	1.10E-02
33	GO:0009506: plasmodesma	1.22E-02
34	GO:0005768: endosome	1.93E-02
35	GO:0009504: cell plate	1.98E-02
36	GO:0019898: extrinsic component of membrane	1.98E-02
37	GO:0016592: mediator complex	2.18E-02
38	GO:0000932: P-body	2.70E-02
39	GO:0019005: SCF ubiquitin ligase complex	3.27E-02
40	GO:0000139: Golgi membrane	3.52E-02
41	GO:0090406: pollen tube	4.63E-02
42	GO:0005730: nucleolus	4.84E-02