GO Enrichment Analysis of Co-expressed Genes with
AT3G53470
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:0009773: photosynthetic electron transport in photosystem I | 2.51E-10 |
| 3 | GO:0010027: thylakoid membrane organization | 4.11E-06 |
| 4 | GO:0015979: photosynthesis | 8.37E-06 |
| 5 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 3.03E-05 |
| 6 | GO:0009306: protein secretion | 3.10E-05 |
| 7 | GO:0032544: plastid translation | 9.46E-05 |
| 8 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.20E-04 |
| 9 | GO:1904964: positive regulation of phytol biosynthetic process | 1.20E-04 |
| 10 | GO:0065002: intracellular protein transmembrane transport | 1.20E-04 |
| 11 | GO:0006106: fumarate metabolic process | 1.20E-04 |
| 12 | GO:1902458: positive regulation of stomatal opening | 1.20E-04 |
| 13 | GO:0034337: RNA folding | 1.20E-04 |
| 14 | GO:0043953: protein transport by the Tat complex | 1.20E-04 |
| 15 | GO:0010205: photoinhibition | 1.41E-04 |
| 16 | GO:0080005: photosystem stoichiometry adjustment | 2.77E-04 |
| 17 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.77E-04 |
| 18 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.77E-04 |
| 19 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.77E-04 |
| 20 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.68E-04 |
| 21 | GO:0006954: inflammatory response | 4.58E-04 |
| 22 | GO:0090391: granum assembly | 4.58E-04 |
| 23 | GO:0016050: vesicle organization | 4.58E-04 |
| 24 | GO:0031022: nuclear migration along microfilament | 4.58E-04 |
| 25 | GO:1902448: positive regulation of shade avoidance | 4.58E-04 |
| 26 | GO:0006000: fructose metabolic process | 4.58E-04 |
| 27 | GO:0080170: hydrogen peroxide transmembrane transport | 6.57E-04 |
| 28 | GO:0010021: amylopectin biosynthetic process | 8.72E-04 |
| 29 | GO:0010109: regulation of photosynthesis | 8.72E-04 |
| 30 | GO:0009765: photosynthesis, light harvesting | 8.72E-04 |
| 31 | GO:0045727: positive regulation of translation | 8.72E-04 |
| 32 | GO:0015994: chlorophyll metabolic process | 8.72E-04 |
| 33 | GO:0009904: chloroplast accumulation movement | 1.10E-03 |
| 34 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.10E-03 |
| 35 | GO:0016120: carotene biosynthetic process | 1.10E-03 |
| 36 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.35E-03 |
| 37 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.35E-03 |
| 38 | GO:0016554: cytidine to uridine editing | 1.35E-03 |
| 39 | GO:0016126: sterol biosynthetic process | 1.39E-03 |
| 40 | GO:0007623: circadian rhythm | 1.42E-03 |
| 41 | GO:0009903: chloroplast avoidance movement | 1.61E-03 |
| 42 | GO:1901259: chloroplast rRNA processing | 1.61E-03 |
| 43 | GO:0018298: protein-chromophore linkage | 1.81E-03 |
| 44 | GO:1900057: positive regulation of leaf senescence | 1.89E-03 |
| 45 | GO:0009395: phospholipid catabolic process | 1.89E-03 |
| 46 | GO:0010196: nonphotochemical quenching | 1.89E-03 |
| 47 | GO:0030091: protein repair | 2.19E-03 |
| 48 | GO:0006605: protein targeting | 2.19E-03 |
| 49 | GO:2000070: regulation of response to water deprivation | 2.19E-03 |
| 50 | GO:0016559: peroxisome fission | 2.19E-03 |
| 51 | GO:0009642: response to light intensity | 2.19E-03 |
| 52 | GO:0055114: oxidation-reduction process | 2.37E-03 |
| 53 | GO:0006002: fructose 6-phosphate metabolic process | 2.50E-03 |
| 54 | GO:1900865: chloroplast RNA modification | 3.16E-03 |
| 55 | GO:0055085: transmembrane transport | 3.34E-03 |
| 56 | GO:0006364: rRNA processing | 3.93E-03 |
| 57 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.26E-03 |
| 58 | GO:0006108: malate metabolic process | 4.64E-03 |
| 59 | GO:0009718: anthocyanin-containing compound biosynthetic process | 4.64E-03 |
| 60 | GO:0006094: gluconeogenesis | 4.64E-03 |
| 61 | GO:0005986: sucrose biosynthetic process | 4.64E-03 |
| 62 | GO:0010207: photosystem II assembly | 5.04E-03 |
| 63 | GO:0010020: chloroplast fission | 5.04E-03 |
| 64 | GO:0019253: reductive pentose-phosphate cycle | 5.04E-03 |
| 65 | GO:0071732: cellular response to nitric oxide | 5.46E-03 |
| 66 | GO:0005985: sucrose metabolic process | 5.46E-03 |
| 67 | GO:0010025: wax biosynthetic process | 5.88E-03 |
| 68 | GO:0009833: plant-type primary cell wall biogenesis | 5.88E-03 |
| 69 | GO:0006833: water transport | 5.88E-03 |
| 70 | GO:0008299: isoprenoid biosynthetic process | 6.76E-03 |
| 71 | GO:0031408: oxylipin biosynthetic process | 7.22E-03 |
| 72 | GO:0016114: terpenoid biosynthetic process | 7.22E-03 |
| 73 | GO:0016226: iron-sulfur cluster assembly | 7.69E-03 |
| 74 | GO:0035428: hexose transmembrane transport | 7.69E-03 |
| 75 | GO:0071369: cellular response to ethylene stimulus | 8.18E-03 |
| 76 | GO:0006633: fatty acid biosynthetic process | 8.77E-03 |
| 77 | GO:0016117: carotenoid biosynthetic process | 9.17E-03 |
| 78 | GO:0034220: ion transmembrane transport | 9.68E-03 |
| 79 | GO:0009735: response to cytokinin | 9.79E-03 |
| 80 | GO:0046323: glucose import | 1.02E-02 |
| 81 | GO:0007018: microtubule-based movement | 1.07E-02 |
| 82 | GO:0019252: starch biosynthetic process | 1.13E-02 |
| 83 | GO:0071281: cellular response to iron ion | 1.30E-02 |
| 84 | GO:0009567: double fertilization forming a zygote and endosperm | 1.36E-02 |
| 85 | GO:0042128: nitrate assimilation | 1.66E-02 |
| 86 | GO:0015995: chlorophyll biosynthetic process | 1.72E-02 |
| 87 | GO:0030244: cellulose biosynthetic process | 1.85E-02 |
| 88 | GO:0000160: phosphorelay signal transduction system | 1.92E-02 |
| 89 | GO:0009631: cold acclimation | 2.05E-02 |
| 90 | GO:0006099: tricarboxylic acid cycle | 2.26E-02 |
| 91 | GO:0051707: response to other organism | 2.63E-02 |
| 92 | GO:0006979: response to oxidative stress | 2.70E-02 |
| 93 | GO:0009644: response to high light intensity | 2.78E-02 |
| 94 | GO:0008152: metabolic process | 3.02E-02 |
| 95 | GO:0009736: cytokinin-activated signaling pathway | 3.25E-02 |
| 96 | GO:0006096: glycolytic process | 3.66E-02 |
| 97 | GO:0009742: brassinosteroid mediated signaling pathway | 4.35E-02 |
| 98 | GO:0005975: carbohydrate metabolic process | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 4 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 5 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 6 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 7 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 8 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 7.28E-07 |
| 9 | GO:0004506: squalene monooxygenase activity | 1.22E-05 |
| 10 | GO:0004333: fumarate hydratase activity | 1.20E-04 |
| 11 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.20E-04 |
| 12 | GO:0045485: omega-6 fatty acid desaturase activity | 1.20E-04 |
| 13 | GO:0004565: beta-galactosidase activity | 2.59E-04 |
| 14 | GO:0047746: chlorophyllase activity | 2.77E-04 |
| 15 | GO:0033201: alpha-1,4-glucan synthase activity | 2.77E-04 |
| 16 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.77E-04 |
| 17 | GO:0042802: identical protein binding | 2.85E-04 |
| 18 | GO:0070402: NADPH binding | 4.58E-04 |
| 19 | GO:0004373: glycogen (starch) synthase activity | 4.58E-04 |
| 20 | GO:0022891: substrate-specific transmembrane transporter activity | 5.89E-04 |
| 21 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 6.57E-04 |
| 22 | GO:0016491: oxidoreductase activity | 6.63E-04 |
| 23 | GO:0009011: starch synthase activity | 8.72E-04 |
| 24 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 8.72E-04 |
| 25 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 8.72E-04 |
| 26 | GO:0043495: protein anchor | 8.72E-04 |
| 27 | GO:0019843: rRNA binding | 9.52E-04 |
| 28 | GO:0042578: phosphoric ester hydrolase activity | 1.35E-03 |
| 29 | GO:0016168: chlorophyll binding | 1.47E-03 |
| 30 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.61E-03 |
| 31 | GO:0019899: enzyme binding | 1.89E-03 |
| 32 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.50E-03 |
| 33 | GO:0016788: hydrolase activity, acting on ester bonds | 2.52E-03 |
| 34 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.82E-03 |
| 35 | GO:0008266: poly(U) RNA binding | 5.04E-03 |
| 36 | GO:0051536: iron-sulfur cluster binding | 6.32E-03 |
| 37 | GO:0005528: FK506 binding | 6.32E-03 |
| 38 | GO:0004176: ATP-dependent peptidase activity | 7.22E-03 |
| 39 | GO:0016760: cellulose synthase (UDP-forming) activity | 8.18E-03 |
| 40 | GO:0008017: microtubule binding | 1.01E-02 |
| 41 | GO:0005355: glucose transmembrane transporter activity | 1.07E-02 |
| 42 | GO:0050662: coenzyme binding | 1.07E-02 |
| 43 | GO:0016853: isomerase activity | 1.07E-02 |
| 44 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.23E-02 |
| 45 | GO:0004518: nuclease activity | 1.24E-02 |
| 46 | GO:0003729: mRNA binding | 1.24E-02 |
| 47 | GO:0000156: phosphorelay response regulator activity | 1.30E-02 |
| 48 | GO:0016759: cellulose synthase activity | 1.36E-02 |
| 49 | GO:0015250: water channel activity | 1.54E-02 |
| 50 | GO:0050660: flavin adenine dinucleotide binding | 1.73E-02 |
| 51 | GO:0008236: serine-type peptidase activity | 1.79E-02 |
| 52 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.85E-02 |
| 53 | GO:0030145: manganese ion binding | 2.05E-02 |
| 54 | GO:0016787: hydrolase activity | 2.13E-02 |
| 55 | GO:0003993: acid phosphatase activity | 2.26E-02 |
| 56 | GO:0005198: structural molecule activity | 2.85E-02 |
| 57 | GO:0005515: protein binding | 2.92E-02 |
| 58 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.93E-02 |
| 59 | GO:0003824: catalytic activity | 3.00E-02 |
| 60 | GO:0003777: microtubule motor activity | 3.49E-02 |
| 61 | GO:0031625: ubiquitin protein ligase binding | 3.49E-02 |
| 62 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.91E-02 |
| 63 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.91E-02 |
| 64 | GO:0016746: transferase activity, transferring acyl groups | 4.26E-02 |
| 65 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010240: plastid pyruvate dehydrogenase complex | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 3.00E-33 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 5.66E-19 |
| 5 | GO:0009534: chloroplast thylakoid | 4.57E-17 |
| 6 | GO:0009941: chloroplast envelope | 1.46E-13 |
| 7 | GO:0009570: chloroplast stroma | 2.17E-13 |
| 8 | GO:0033281: TAT protein transport complex | 2.76E-09 |
| 9 | GO:0009579: thylakoid | 9.37E-08 |
| 10 | GO:0010287: plastoglobule | 6.24E-06 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.17E-04 |
| 12 | GO:0009515: granal stacked thylakoid | 1.20E-04 |
| 13 | GO:0045239: tricarboxylic acid cycle enzyme complex | 1.20E-04 |
| 14 | GO:0031361: integral component of thylakoid membrane | 1.20E-04 |
| 15 | GO:0009508: plastid chromosome | 2.59E-04 |
| 16 | GO:0030093: chloroplast photosystem I | 2.77E-04 |
| 17 | GO:0031969: chloroplast membrane | 5.44E-04 |
| 18 | GO:0009523: photosystem II | 9.17E-04 |
| 19 | GO:0009543: chloroplast thylakoid lumen | 9.52E-04 |
| 20 | GO:0009295: nucleoid | 1.24E-03 |
| 21 | GO:0009501: amyloplast | 2.19E-03 |
| 22 | GO:0016021: integral component of membrane | 2.43E-03 |
| 23 | GO:0031977: thylakoid lumen | 2.70E-03 |
| 24 | GO:0008180: COP9 signalosome | 2.82E-03 |
| 25 | GO:0032040: small-subunit processome | 4.26E-03 |
| 26 | GO:0009706: chloroplast inner membrane | 5.58E-03 |
| 27 | GO:0042651: thylakoid membrane | 6.76E-03 |
| 28 | GO:0009654: photosystem II oxygen evolving complex | 6.76E-03 |
| 29 | GO:0005871: kinesin complex | 9.17E-03 |
| 30 | GO:0009522: photosystem I | 1.07E-02 |
| 31 | GO:0019898: extrinsic component of membrane | 1.13E-02 |
| 32 | GO:0010319: stromule | 1.41E-02 |
| 33 | GO:0048046: apoplast | 1.55E-02 |
| 34 | GO:0019005: SCF ubiquitin ligase complex | 1.85E-02 |
| 35 | GO:0009707: chloroplast outer membrane | 1.85E-02 |
| 36 | GO:0015934: large ribosomal subunit | 2.05E-02 |
| 37 | GO:0000502: proteasome complex | 3.25E-02 |
| 38 | GO:0005623: cell | 4.99E-02 |