GO Enrichment Analysis of Co-expressed Genes with
AT3G53420
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0015670: carbon dioxide transport | 0.00E+00 |
| 3 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 4 | GO:0009773: photosynthetic electron transport in photosystem I | 1.39E-07 |
| 5 | GO:0090391: granum assembly | 5.74E-06 |
| 6 | GO:0010027: thylakoid membrane organization | 1.35E-05 |
| 7 | GO:0015979: photosynthesis | 3.96E-05 |
| 8 | GO:0016120: carotene biosynthetic process | 3.97E-05 |
| 9 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 5.89E-05 |
| 10 | GO:0055114: oxidation-reduction process | 9.22E-05 |
| 11 | GO:0034220: ion transmembrane transport | 9.40E-05 |
| 12 | GO:0010196: nonphotochemical quenching | 1.09E-04 |
| 13 | GO:0009642: response to light intensity | 1.40E-04 |
| 14 | GO:0043953: protein transport by the Tat complex | 1.80E-04 |
| 15 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.80E-04 |
| 16 | GO:1904964: positive regulation of phytol biosynthetic process | 1.80E-04 |
| 17 | GO:0065002: intracellular protein transmembrane transport | 1.80E-04 |
| 18 | GO:0043686: co-translational protein modification | 1.80E-04 |
| 19 | GO:0010205: photoinhibition | 2.55E-04 |
| 20 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.05E-04 |
| 21 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.05E-04 |
| 22 | GO:0035304: regulation of protein dephosphorylation | 4.05E-04 |
| 23 | GO:0080005: photosystem stoichiometry adjustment | 4.05E-04 |
| 24 | GO:0010115: regulation of abscisic acid biosynthetic process | 4.05E-04 |
| 25 | GO:0055085: transmembrane transport | 4.72E-04 |
| 26 | GO:0010207: photosystem II assembly | 5.13E-04 |
| 27 | GO:0006833: water transport | 6.38E-04 |
| 28 | GO:0031022: nuclear migration along microfilament | 6.61E-04 |
| 29 | GO:0006954: inflammatory response | 6.61E-04 |
| 30 | GO:0006810: transport | 7.25E-04 |
| 31 | GO:0031408: oxylipin biosynthetic process | 8.51E-04 |
| 32 | GO:0080170: hydrogen peroxide transmembrane transport | 9.45E-04 |
| 33 | GO:0009735: response to cytokinin | 1.11E-03 |
| 34 | GO:0009765: photosynthesis, light harvesting | 1.25E-03 |
| 35 | GO:0006109: regulation of carbohydrate metabolic process | 1.25E-03 |
| 36 | GO:0045727: positive regulation of translation | 1.25E-03 |
| 37 | GO:0015994: chlorophyll metabolic process | 1.25E-03 |
| 38 | GO:0030104: water homeostasis | 1.25E-03 |
| 39 | GO:0030308: negative regulation of cell growth | 1.59E-03 |
| 40 | GO:0006564: L-serine biosynthetic process | 1.59E-03 |
| 41 | GO:0009904: chloroplast accumulation movement | 1.59E-03 |
| 42 | GO:0031365: N-terminal protein amino acid modification | 1.59E-03 |
| 43 | GO:0006869: lipid transport | 1.93E-03 |
| 44 | GO:0042549: photosystem II stabilization | 1.96E-03 |
| 45 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.96E-03 |
| 46 | GO:0009913: epidermal cell differentiation | 1.96E-03 |
| 47 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.96E-03 |
| 48 | GO:0006561: proline biosynthetic process | 1.96E-03 |
| 49 | GO:0009903: chloroplast avoidance movement | 2.35E-03 |
| 50 | GO:0016126: sterol biosynthetic process | 2.42E-03 |
| 51 | GO:0009395: phospholipid catabolic process | 2.77E-03 |
| 52 | GO:1900057: positive regulation of leaf senescence | 2.77E-03 |
| 53 | GO:0010444: guard mother cell differentiation | 2.77E-03 |
| 54 | GO:0015693: magnesium ion transport | 2.77E-03 |
| 55 | GO:0015995: chlorophyll biosynthetic process | 2.84E-03 |
| 56 | GO:0007623: circadian rhythm | 2.90E-03 |
| 57 | GO:0018298: protein-chromophore linkage | 3.15E-03 |
| 58 | GO:0016559: peroxisome fission | 3.21E-03 |
| 59 | GO:0008610: lipid biosynthetic process | 3.21E-03 |
| 60 | GO:0030091: protein repair | 3.21E-03 |
| 61 | GO:0006605: protein targeting | 3.21E-03 |
| 62 | GO:0032544: plastid translation | 3.67E-03 |
| 63 | GO:0009658: chloroplast organization | 5.04E-03 |
| 64 | GO:0055062: phosphate ion homeostasis | 5.18E-03 |
| 65 | GO:0009688: abscisic acid biosynthetic process | 5.18E-03 |
| 66 | GO:0000038: very long-chain fatty acid metabolic process | 5.72E-03 |
| 67 | GO:0019684: photosynthesis, light reaction | 5.72E-03 |
| 68 | GO:0043085: positive regulation of catalytic activity | 5.72E-03 |
| 69 | GO:0009750: response to fructose | 5.72E-03 |
| 70 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.28E-03 |
| 71 | GO:0080167: response to karrikin | 6.63E-03 |
| 72 | GO:0045893: positive regulation of transcription, DNA-templated | 6.80E-03 |
| 73 | GO:0010628: positive regulation of gene expression | 6.86E-03 |
| 74 | GO:0009718: anthocyanin-containing compound biosynthetic process | 6.86E-03 |
| 75 | GO:0006857: oligopeptide transport | 7.39E-03 |
| 76 | GO:0010020: chloroplast fission | 7.46E-03 |
| 77 | GO:0071732: cellular response to nitric oxide | 8.08E-03 |
| 78 | GO:0006096: glycolytic process | 8.16E-03 |
| 79 | GO:0010025: wax biosynthetic process | 8.71E-03 |
| 80 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.71E-03 |
| 81 | GO:0009833: plant-type primary cell wall biogenesis | 8.71E-03 |
| 82 | GO:0005975: carbohydrate metabolic process | 9.22E-03 |
| 83 | GO:0008299: isoprenoid biosynthetic process | 1.00E-02 |
| 84 | GO:0007017: microtubule-based process | 1.00E-02 |
| 85 | GO:0009695: jasmonic acid biosynthetic process | 1.00E-02 |
| 86 | GO:0016998: cell wall macromolecule catabolic process | 1.07E-02 |
| 87 | GO:0035428: hexose transmembrane transport | 1.14E-02 |
| 88 | GO:0071369: cellular response to ethylene stimulus | 1.22E-02 |
| 89 | GO:0042127: regulation of cell proliferation | 1.29E-02 |
| 90 | GO:0009306: protein secretion | 1.29E-02 |
| 91 | GO:0016117: carotenoid biosynthetic process | 1.37E-02 |
| 92 | GO:0042335: cuticle development | 1.44E-02 |
| 93 | GO:0000413: protein peptidyl-prolyl isomerization | 1.44E-02 |
| 94 | GO:0006662: glycerol ether metabolic process | 1.52E-02 |
| 95 | GO:0010182: sugar mediated signaling pathway | 1.52E-02 |
| 96 | GO:0046323: glucose import | 1.52E-02 |
| 97 | GO:0006633: fatty acid biosynthetic process | 1.55E-02 |
| 98 | GO:0007018: microtubule-based movement | 1.60E-02 |
| 99 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.77E-02 |
| 100 | GO:0071554: cell wall organization or biogenesis | 1.77E-02 |
| 101 | GO:0071281: cellular response to iron ion | 1.94E-02 |
| 102 | GO:0009567: double fertilization forming a zygote and endosperm | 2.03E-02 |
| 103 | GO:0009416: response to light stimulus | 2.25E-02 |
| 104 | GO:0042128: nitrate assimilation | 2.48E-02 |
| 105 | GO:0010411: xyloglucan metabolic process | 2.58E-02 |
| 106 | GO:0048573: photoperiodism, flowering | 2.58E-02 |
| 107 | GO:0030244: cellulose biosynthetic process | 2.77E-02 |
| 108 | GO:0000160: phosphorelay signal transduction system | 2.87E-02 |
| 109 | GO:0009637: response to blue light | 3.28E-02 |
| 110 | GO:0034599: cellular response to oxidative stress | 3.39E-02 |
| 111 | GO:0051707: response to other organism | 3.93E-02 |
| 112 | GO:0042546: cell wall biogenesis | 4.04E-02 |
| 113 | GO:0009644: response to high light intensity | 4.16E-02 |
| 114 | GO:0009809: lignin biosynthetic process | 4.86E-02 |
| 115 | GO:0006364: rRNA processing | 4.86E-02 |
| 116 | GO:0009736: cytokinin-activated signaling pathway | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 2 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 3 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 4 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 5 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 6 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 7 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 2.45E-05 |
| 8 | GO:0004506: squalene monooxygenase activity | 2.45E-05 |
| 9 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.80E-04 |
| 10 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.80E-04 |
| 11 | GO:0010242: oxygen evolving activity | 1.80E-04 |
| 12 | GO:0042586: peptide deformylase activity | 1.80E-04 |
| 13 | GO:0004321: fatty-acyl-CoA synthase activity | 1.80E-04 |
| 14 | GO:0004328: formamidase activity | 1.80E-04 |
| 15 | GO:0015250: water channel activity | 2.41E-04 |
| 16 | GO:0016168: chlorophyll binding | 2.60E-04 |
| 17 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.05E-04 |
| 18 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.05E-04 |
| 19 | GO:0047746: chlorophyllase activity | 4.05E-04 |
| 20 | GO:0004565: beta-galactosidase activity | 4.55E-04 |
| 21 | GO:0008266: poly(U) RNA binding | 5.13E-04 |
| 22 | GO:0016491: oxidoreductase activity | 5.68E-04 |
| 23 | GO:0070402: NADPH binding | 6.61E-04 |
| 24 | GO:0042802: identical protein binding | 6.89E-04 |
| 25 | GO:0005528: FK506 binding | 7.06E-04 |
| 26 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.84E-04 |
| 27 | GO:0001872: (1->3)-beta-D-glucan binding | 9.45E-04 |
| 28 | GO:0016851: magnesium chelatase activity | 9.45E-04 |
| 29 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 9.45E-04 |
| 30 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 9.45E-04 |
| 31 | GO:0022891: substrate-specific transmembrane transporter activity | 1.01E-03 |
| 32 | GO:0043495: protein anchor | 1.25E-03 |
| 33 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.25E-03 |
| 34 | GO:0035673: oligopeptide transmembrane transporter activity | 1.96E-03 |
| 35 | GO:0042578: phosphoric ester hydrolase activity | 1.96E-03 |
| 36 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.35E-03 |
| 37 | GO:0019899: enzyme binding | 2.77E-03 |
| 38 | GO:0052747: sinapyl alcohol dehydrogenase activity | 3.21E-03 |
| 39 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.67E-03 |
| 40 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.93E-03 |
| 41 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 4.15E-03 |
| 42 | GO:0016207: 4-coumarate-CoA ligase activity | 4.15E-03 |
| 43 | GO:0003993: acid phosphatase activity | 4.16E-03 |
| 44 | GO:0016788: hydrolase activity, acting on ester bonds | 5.17E-03 |
| 45 | GO:0008047: enzyme activator activity | 5.18E-03 |
| 46 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 6.28E-03 |
| 47 | GO:0015198: oligopeptide transporter activity | 6.28E-03 |
| 48 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.86E-03 |
| 49 | GO:0015095: magnesium ion transmembrane transporter activity | 6.86E-03 |
| 50 | GO:0008146: sulfotransferase activity | 8.08E-03 |
| 51 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 8.71E-03 |
| 52 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 8.71E-03 |
| 53 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 8.71E-03 |
| 54 | GO:0004857: enzyme inhibitor activity | 9.37E-03 |
| 55 | GO:0043424: protein histidine kinase binding | 1.00E-02 |
| 56 | GO:0016746: transferase activity, transferring acyl groups | 1.01E-02 |
| 57 | GO:0004176: ATP-dependent peptidase activity | 1.07E-02 |
| 58 | GO:0016760: cellulose synthase (UDP-forming) activity | 1.22E-02 |
| 59 | GO:0047134: protein-disulfide reductase activity | 1.37E-02 |
| 60 | GO:0004791: thioredoxin-disulfide reductase activity | 1.60E-02 |
| 61 | GO:0016853: isomerase activity | 1.60E-02 |
| 62 | GO:0005355: glucose transmembrane transporter activity | 1.60E-02 |
| 63 | GO:0050662: coenzyme binding | 1.60E-02 |
| 64 | GO:0008289: lipid binding | 1.66E-02 |
| 65 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.77E-02 |
| 66 | GO:0008017: microtubule binding | 1.79E-02 |
| 67 | GO:0005215: transporter activity | 1.86E-02 |
| 68 | GO:0000156: phosphorelay response regulator activity | 1.94E-02 |
| 69 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.94E-02 |
| 70 | GO:0016759: cellulose synthase activity | 2.03E-02 |
| 71 | GO:0008483: transaminase activity | 2.11E-02 |
| 72 | GO:0005200: structural constituent of cytoskeleton | 2.11E-02 |
| 73 | GO:0016413: O-acetyltransferase activity | 2.20E-02 |
| 74 | GO:0016597: amino acid binding | 2.20E-02 |
| 75 | GO:0030247: polysaccharide binding | 2.58E-02 |
| 76 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.58E-02 |
| 77 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.77E-02 |
| 78 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.97E-02 |
| 79 | GO:0050660: flavin adenine dinucleotide binding | 3.06E-02 |
| 80 | GO:0030145: manganese ion binding | 3.08E-02 |
| 81 | GO:0030246: carbohydrate binding | 3.26E-02 |
| 82 | GO:0052689: carboxylic ester hydrolase activity | 3.62E-02 |
| 83 | GO:0004871: signal transducer activity | 4.10E-02 |
| 84 | GO:0015293: symporter activity | 4.27E-02 |
| 85 | GO:0051287: NAD binding | 4.50E-02 |
| 86 | GO:0003924: GTPase activity | 4.81E-02 |
| 87 | GO:0016787: hydrolase activity | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010240: plastid pyruvate dehydrogenase complex | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 5.51E-28 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.35E-17 |
| 6 | GO:0009534: chloroplast thylakoid | 1.94E-16 |
| 7 | GO:0009570: chloroplast stroma | 3.75E-10 |
| 8 | GO:0009579: thylakoid | 4.62E-10 |
| 9 | GO:0009941: chloroplast envelope | 1.54E-08 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 1.70E-06 |
| 11 | GO:0031977: thylakoid lumen | 2.57E-06 |
| 12 | GO:0031969: chloroplast membrane | 2.79E-05 |
| 13 | GO:0016021: integral component of membrane | 1.62E-04 |
| 14 | GO:0031361: integral component of thylakoid membrane | 1.80E-04 |
| 15 | GO:0043674: columella | 1.80E-04 |
| 16 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.13E-04 |
| 17 | GO:0010287: plastoglobule | 2.62E-04 |
| 18 | GO:0010007: magnesium chelatase complex | 6.61E-04 |
| 19 | GO:0033281: TAT protein transport complex | 6.61E-04 |
| 20 | GO:0046658: anchored component of plasma membrane | 7.33E-04 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 7.77E-04 |
| 22 | GO:0015630: microtubule cytoskeleton | 9.45E-04 |
| 23 | GO:0009523: photosystem II | 1.57E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 1.57E-03 |
| 25 | GO:0009533: chloroplast stromal thylakoid | 2.77E-03 |
| 26 | GO:0042807: central vacuole | 2.77E-03 |
| 27 | GO:0005887: integral component of plasma membrane | 3.67E-03 |
| 28 | GO:0008180: COP9 signalosome | 4.15E-03 |
| 29 | GO:0030095: chloroplast photosystem II | 7.46E-03 |
| 30 | GO:0042651: thylakoid membrane | 1.00E-02 |
| 31 | GO:0005886: plasma membrane | 1.07E-02 |
| 32 | GO:0005623: cell | 1.27E-02 |
| 33 | GO:0005871: kinesin complex | 1.37E-02 |
| 34 | GO:0048046: apoplast | 1.50E-02 |
| 35 | GO:0009522: photosystem I | 1.60E-02 |
| 36 | GO:0016020: membrane | 1.86E-02 |
| 37 | GO:0005777: peroxisome | 2.67E-02 |
| 38 | GO:0019005: SCF ubiquitin ligase complex | 2.77E-02 |
| 39 | GO:0009707: chloroplast outer membrane | 2.77E-02 |
| 40 | GO:0005773: vacuole | 3.05E-02 |
| 41 | GO:0005874: microtubule | 3.16E-02 |
| 42 | GO:0031225: anchored component of membrane | 3.91E-02 |
| 43 | GO:0000502: proteasome complex | 4.86E-02 |