GO Enrichment Analysis of Co-expressed Genes with
AT3G52870
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006573: valine metabolic process | 0.00E+00 |
| 2 | GO:0016117: carotenoid biosynthetic process | 3.65E-08 |
| 3 | GO:0019253: reductive pentose-phosphate cycle | 7.69E-07 |
| 4 | GO:0006546: glycine catabolic process | 2.14E-06 |
| 5 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.14E-06 |
| 6 | GO:0016123: xanthophyll biosynthetic process | 3.64E-06 |
| 7 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 4.31E-05 |
| 8 | GO:0010480: microsporocyte differentiation | 4.31E-05 |
| 9 | GO:0006551: leucine metabolic process | 4.31E-05 |
| 10 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 5.78E-05 |
| 11 | GO:0009767: photosynthetic electron transport chain | 5.98E-05 |
| 12 | GO:0080183: response to photooxidative stress | 1.07E-04 |
| 13 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.07E-04 |
| 14 | GO:0006000: fructose metabolic process | 1.84E-04 |
| 15 | GO:0006518: peptide metabolic process | 1.84E-04 |
| 16 | GO:0006696: ergosterol biosynthetic process | 1.84E-04 |
| 17 | GO:0016556: mRNA modification | 2.70E-04 |
| 18 | GO:0033014: tetrapyrrole biosynthetic process | 2.70E-04 |
| 19 | GO:0043572: plastid fission | 2.70E-04 |
| 20 | GO:2001141: regulation of RNA biosynthetic process | 2.70E-04 |
| 21 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 2.70E-04 |
| 22 | GO:0051085: chaperone mediated protein folding requiring cofactor | 2.70E-04 |
| 23 | GO:0009765: photosynthesis, light harvesting | 3.64E-04 |
| 24 | GO:0016120: carotene biosynthetic process | 4.63E-04 |
| 25 | GO:0010236: plastoquinone biosynthetic process | 4.63E-04 |
| 26 | GO:0042026: protein refolding | 6.76E-04 |
| 27 | GO:0009082: branched-chain amino acid biosynthetic process | 6.76E-04 |
| 28 | GO:0009099: valine biosynthetic process | 6.76E-04 |
| 29 | GO:0048437: floral organ development | 7.90E-04 |
| 30 | GO:0009744: response to sucrose | 7.97E-04 |
| 31 | GO:0048564: photosystem I assembly | 9.08E-04 |
| 32 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 1.03E-03 |
| 33 | GO:0009097: isoleucine biosynthetic process | 1.03E-03 |
| 34 | GO:0006002: fructose 6-phosphate metabolic process | 1.03E-03 |
| 35 | GO:0071482: cellular response to light stimulus | 1.03E-03 |
| 36 | GO:0006783: heme biosynthetic process | 1.16E-03 |
| 37 | GO:0006096: glycolytic process | 1.24E-03 |
| 38 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.29E-03 |
| 39 | GO:0009409: response to cold | 1.35E-03 |
| 40 | GO:0010192: mucilage biosynthetic process | 1.43E-03 |
| 41 | GO:0006810: transport | 1.53E-03 |
| 42 | GO:0009773: photosynthetic electron transport in photosystem I | 1.57E-03 |
| 43 | GO:0019684: photosynthesis, light reaction | 1.57E-03 |
| 44 | GO:0006352: DNA-templated transcription, initiation | 1.57E-03 |
| 45 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.57E-03 |
| 46 | GO:0048229: gametophyte development | 1.57E-03 |
| 47 | GO:0046686: response to cadmium ion | 1.67E-03 |
| 48 | GO:0006006: glucose metabolic process | 1.87E-03 |
| 49 | GO:0010075: regulation of meristem growth | 1.87E-03 |
| 50 | GO:0006094: gluconeogenesis | 1.87E-03 |
| 51 | GO:0005986: sucrose biosynthetic process | 1.87E-03 |
| 52 | GO:0009416: response to light stimulus | 1.97E-03 |
| 53 | GO:0010020: chloroplast fission | 2.03E-03 |
| 54 | GO:0009934: regulation of meristem structural organization | 2.03E-03 |
| 55 | GO:0009833: plant-type primary cell wall biogenesis | 2.36E-03 |
| 56 | GO:0055114: oxidation-reduction process | 2.51E-03 |
| 57 | GO:0006730: one-carbon metabolic process | 3.06E-03 |
| 58 | GO:0007005: mitochondrion organization | 3.06E-03 |
| 59 | GO:0080092: regulation of pollen tube growth | 3.06E-03 |
| 60 | GO:0048653: anther development | 3.82E-03 |
| 61 | GO:0009658: chloroplast organization | 3.88E-03 |
| 62 | GO:0008360: regulation of cell shape | 4.02E-03 |
| 63 | GO:0019252: starch biosynthetic process | 4.43E-03 |
| 64 | GO:0010583: response to cyclopentenone | 4.86E-03 |
| 65 | GO:0010090: trichome morphogenesis | 5.07E-03 |
| 66 | GO:0010286: heat acclimation | 5.52E-03 |
| 67 | GO:0009607: response to biotic stimulus | 6.21E-03 |
| 68 | GO:0009627: systemic acquired resistance | 6.45E-03 |
| 69 | GO:0009817: defense response to fungus, incompatible interaction | 7.19E-03 |
| 70 | GO:0030244: cellulose biosynthetic process | 7.19E-03 |
| 71 | GO:0008219: cell death | 7.19E-03 |
| 72 | GO:0009832: plant-type cell wall biogenesis | 7.43E-03 |
| 73 | GO:0009407: toxin catabolic process | 7.69E-03 |
| 74 | GO:0008152: metabolic process | 7.80E-03 |
| 75 | GO:0005975: carbohydrate metabolic process | 8.14E-03 |
| 76 | GO:0016051: carbohydrate biosynthetic process | 8.47E-03 |
| 77 | GO:0009853: photorespiration | 8.47E-03 |
| 78 | GO:0009636: response to toxic substance | 1.10E-02 |
| 79 | GO:0042538: hyperosmotic salinity response | 1.19E-02 |
| 80 | GO:0006468: protein phosphorylation | 1.89E-02 |
| 81 | GO:0007623: circadian rhythm | 2.36E-02 |
| 82 | GO:0071555: cell wall organization | 2.56E-02 |
| 83 | GO:0009860: pollen tube growth | 3.40E-02 |
| 84 | GO:0046777: protein autophosphorylation | 3.94E-02 |
| 85 | GO:0045454: cell redox homeostasis | 4.27E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 2 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 3 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 4 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 5 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 6 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.10E-06 |
| 7 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 8.18E-06 |
| 8 | GO:0004325: ferrochelatase activity | 4.31E-05 |
| 9 | GO:0051996: squalene synthase activity | 4.31E-05 |
| 10 | GO:0003984: acetolactate synthase activity | 4.31E-05 |
| 11 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.07E-04 |
| 12 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.07E-04 |
| 13 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 1.07E-04 |
| 14 | GO:0010291: carotene beta-ring hydroxylase activity | 1.07E-04 |
| 15 | GO:0004618: phosphoglycerate kinase activity | 1.07E-04 |
| 16 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 1.07E-04 |
| 17 | GO:0004047: aminomethyltransferase activity | 1.07E-04 |
| 18 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.84E-04 |
| 19 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 2.70E-04 |
| 20 | GO:0016597: amino acid binding | 3.62E-04 |
| 21 | GO:0016987: sigma factor activity | 3.64E-04 |
| 22 | GO:0001053: plastid sigma factor activity | 3.64E-04 |
| 23 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 3.64E-04 |
| 24 | GO:0004222: metalloendopeptidase activity | 5.47E-04 |
| 25 | GO:0042578: phosphoric ester hydrolase activity | 5.67E-04 |
| 26 | GO:0008200: ion channel inhibitor activity | 5.67E-04 |
| 27 | GO:0080030: methyl indole-3-acetate esterase activity | 5.67E-04 |
| 28 | GO:0043295: glutathione binding | 7.90E-04 |
| 29 | GO:0003843: 1,3-beta-D-glucan synthase activity | 1.03E-03 |
| 30 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.57E-03 |
| 31 | GO:0044183: protein binding involved in protein folding | 1.57E-03 |
| 32 | GO:0004565: beta-galactosidase activity | 1.87E-03 |
| 33 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.89E-03 |
| 34 | GO:0004674: protein serine/threonine kinase activity | 2.41E-03 |
| 35 | GO:0004176: ATP-dependent peptidase activity | 2.88E-03 |
| 36 | GO:0033612: receptor serine/threonine kinase binding | 2.88E-03 |
| 37 | GO:0016760: cellulose synthase (UDP-forming) activity | 3.24E-03 |
| 38 | GO:0005524: ATP binding | 4.23E-03 |
| 39 | GO:0048038: quinone binding | 4.64E-03 |
| 40 | GO:0016759: cellulose synthase activity | 5.30E-03 |
| 41 | GO:0016757: transferase activity, transferring glycosyl groups | 5.47E-03 |
| 42 | GO:0008483: transaminase activity | 5.52E-03 |
| 43 | GO:0008237: metallopeptidase activity | 5.52E-03 |
| 44 | GO:0016491: oxidoreductase activity | 6.79E-03 |
| 45 | GO:0004672: protein kinase activity | 7.80E-03 |
| 46 | GO:0050897: cobalt ion binding | 7.95E-03 |
| 47 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 8.47E-03 |
| 48 | GO:0050661: NADP binding | 9.28E-03 |
| 49 | GO:0004364: glutathione transferase activity | 9.83E-03 |
| 50 | GO:0043621: protein self-association | 1.07E-02 |
| 51 | GO:0005198: structural molecule activity | 1.10E-02 |
| 52 | GO:0051287: NAD binding | 1.16E-02 |
| 53 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.25E-02 |
| 54 | GO:0051082: unfolded protein binding | 1.60E-02 |
| 55 | GO:0030246: carbohydrate binding | 1.70E-02 |
| 56 | GO:0019825: oxygen binding | 1.80E-02 |
| 57 | GO:0016758: transferase activity, transferring hexosyl groups | 1.84E-02 |
| 58 | GO:0019843: rRNA binding | 1.88E-02 |
| 59 | GO:0005509: calcium ion binding | 2.36E-02 |
| 60 | GO:0008194: UDP-glycosyltransferase activity | 2.56E-02 |
| 61 | GO:0016788: hydrolase activity, acting on ester bonds | 3.27E-02 |
| 62 | GO:0050660: flavin adenine dinucleotide binding | 3.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0005948: acetolactate synthase complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.39E-14 |
| 4 | GO:0009941: chloroplast envelope | 9.54E-09 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 6.83E-08 |
| 6 | GO:0031969: chloroplast membrane | 8.85E-08 |
| 7 | GO:0010319: stromule | 1.56E-07 |
| 8 | GO:0005960: glycine cleavage complex | 1.10E-06 |
| 9 | GO:0009570: chloroplast stroma | 5.81E-06 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.46E-05 |
| 11 | GO:0048046: apoplast | 5.19E-05 |
| 12 | GO:0030095: chloroplast photosystem II | 6.90E-05 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 1.12E-04 |
| 14 | GO:0019898: extrinsic component of membrane | 2.46E-04 |
| 15 | GO:0009579: thylakoid | 3.87E-04 |
| 16 | GO:0009534: chloroplast thylakoid | 3.94E-04 |
| 17 | GO:0055035: plastid thylakoid membrane | 4.63E-04 |
| 18 | GO:0000148: 1,3-beta-D-glucan synthase complex | 1.03E-03 |
| 19 | GO:0016324: apical plasma membrane | 1.43E-03 |
| 20 | GO:0009543: chloroplast thylakoid lumen | 1.84E-03 |
| 21 | GO:0022626: cytosolic ribosome | 1.20E-02 |
| 22 | GO:0005747: mitochondrial respiratory chain complex I | 1.44E-02 |
| 23 | GO:0009706: chloroplast inner membrane | 1.60E-02 |
| 24 | GO:0010287: plastoglobule | 1.81E-02 |
| 25 | GO:0005759: mitochondrial matrix | 2.21E-02 |
| 26 | GO:0005886: plasma membrane | 4.82E-02 |