Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G52840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
2GO:0045176: apical protein localization0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
6GO:0009773: photosynthetic electron transport in photosystem I1.22E-12
7GO:0010027: thylakoid membrane organization4.80E-09
8GO:0015979: photosynthesis6.19E-08
9GO:0006094: gluconeogenesis7.20E-05
10GO:0018298: protein-chromophore linkage1.32E-04
11GO:0042549: photosystem II stabilization1.63E-04
12GO:0010196: nonphotochemical quenching2.89E-04
13GO:0042335: cuticle development3.38E-04
14GO:0000481: maturation of 5S rRNA3.40E-04
15GO:1904964: positive regulation of phytol biosynthetic process3.40E-04
16GO:0080051: cutin transport3.40E-04
17GO:0065002: intracellular protein transmembrane transport3.40E-04
18GO:0006106: fumarate metabolic process3.40E-04
19GO:0034337: RNA folding3.40E-04
20GO:0071588: hydrogen peroxide mediated signaling pathway3.40E-04
21GO:0015936: coenzyme A metabolic process3.40E-04
22GO:0070509: calcium ion import3.40E-04
23GO:0007263: nitric oxide mediated signal transduction3.40E-04
24GO:0043489: RNA stabilization3.40E-04
25GO:0043953: protein transport by the Tat complex3.40E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process3.40E-04
27GO:0071277: cellular response to calcium ion3.40E-04
28GO:0008610: lipid biosynthetic process3.64E-04
29GO:0009735: response to cytokinin4.14E-04
30GO:0032544: plastid translation4.45E-04
31GO:0009416: response to light stimulus5.08E-04
32GO:0010205: photoinhibition6.32E-04
33GO:0009638: phototropism6.32E-04
34GO:0030388: fructose 1,6-bisphosphate metabolic process7.40E-04
35GO:0035304: regulation of protein dephosphorylation7.40E-04
36GO:0080005: photosystem stoichiometry adjustment7.40E-04
37GO:0010115: regulation of abscisic acid biosynthetic process7.40E-04
38GO:1902326: positive regulation of chlorophyll biosynthetic process7.40E-04
39GO:1900871: chloroplast mRNA modification7.40E-04
40GO:0015908: fatty acid transport7.40E-04
41GO:0042939: tripeptide transport7.40E-04
42GO:0034755: iron ion transmembrane transport7.40E-04
43GO:0000038: very long-chain fatty acid metabolic process8.49E-04
44GO:0055085: transmembrane transport8.63E-04
45GO:0051604: protein maturation1.20E-03
46GO:0016050: vesicle organization1.20E-03
47GO:0031022: nuclear migration along microfilament1.20E-03
48GO:1902448: positive regulation of shade avoidance1.20E-03
49GO:0006000: fructose metabolic process1.20E-03
50GO:0006954: inflammatory response1.20E-03
51GO:0090391: granum assembly1.20E-03
52GO:0006518: peptide metabolic process1.20E-03
53GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.20E-03
54GO:0010207: photosystem II assembly1.23E-03
55GO:0009631: cold acclimation1.31E-03
56GO:0006833: water transport1.54E-03
57GO:0010025: wax biosynthetic process1.54E-03
58GO:0009409: response to cold1.55E-03
59GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.72E-03
60GO:0009152: purine ribonucleotide biosynthetic process1.72E-03
61GO:0046653: tetrahydrofolate metabolic process1.72E-03
62GO:0009052: pentose-phosphate shunt, non-oxidative branch1.72E-03
63GO:0080170: hydrogen peroxide transmembrane transport1.72E-03
64GO:1901332: negative regulation of lateral root development1.72E-03
65GO:0008299: isoprenoid biosynthetic process1.88E-03
66GO:0009768: photosynthesis, light harvesting in photosystem I1.88E-03
67GO:0042938: dipeptide transport2.31E-03
68GO:0010021: amylopectin biosynthetic process2.31E-03
69GO:0010222: stem vascular tissue pattern formation2.31E-03
70GO:0010109: regulation of photosynthesis2.31E-03
71GO:0009765: photosynthesis, light harvesting2.31E-03
72GO:0006109: regulation of carbohydrate metabolic process2.31E-03
73GO:0045727: positive regulation of translation2.31E-03
74GO:0015994: chlorophyll metabolic process2.31E-03
75GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.31E-03
76GO:0009306: protein secretion2.68E-03
77GO:0008152: metabolic process2.85E-03
78GO:0009904: chloroplast accumulation movement2.96E-03
79GO:0045038: protein import into chloroplast thylakoid membrane2.96E-03
80GO:0006461: protein complex assembly2.96E-03
81GO:0016120: carotene biosynthetic process2.96E-03
82GO:0006564: L-serine biosynthetic process2.96E-03
83GO:0034220: ion transmembrane transport3.13E-03
84GO:0006561: proline biosynthetic process3.65E-03
85GO:0048827: phyllome development3.65E-03
86GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.65E-03
87GO:0000470: maturation of LSU-rRNA3.65E-03
88GO:0009913: epidermal cell differentiation3.65E-03
89GO:0006655: phosphatidylglycerol biosynthetic process3.65E-03
90GO:0016554: cytidine to uridine editing3.65E-03
91GO:0010190: cytochrome b6f complex assembly3.65E-03
92GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.65E-03
93GO:0006096: glycolytic process3.68E-03
94GO:0009903: chloroplast avoidance movement4.40E-03
95GO:0010019: chloroplast-nucleus signaling pathway4.40E-03
96GO:0015693: magnesium ion transport5.19E-03
97GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.19E-03
98GO:1900057: positive regulation of leaf senescence5.19E-03
99GO:0009645: response to low light intensity stimulus5.19E-03
100GO:0032508: DNA duplex unwinding6.03E-03
101GO:0010492: maintenance of shoot apical meristem identity6.03E-03
102GO:0009642: response to light intensity6.03E-03
103GO:0006605: protein targeting6.03E-03
104GO:0009704: de-etiolation6.03E-03
105GO:0006002: fructose 6-phosphate metabolic process6.92E-03
106GO:0071482: cellular response to light stimulus6.92E-03
107GO:0009657: plastid organization6.92E-03
108GO:0015995: chlorophyll biosynthetic process7.10E-03
109GO:0042744: hydrogen peroxide catabolic process7.33E-03
110GO:0000373: Group II intron splicing7.85E-03
111GO:0006098: pentose-phosphate shunt7.85E-03
112GO:0090333: regulation of stomatal closure7.85E-03
113GO:0048507: meristem development7.85E-03
114GO:0006633: fatty acid biosynthetic process8.31E-03
115GO:1900865: chloroplast RNA modification8.82E-03
116GO:0009688: abscisic acid biosynthetic process9.84E-03
117GO:0055062: phosphate ion homeostasis9.84E-03
118GO:0034599: cellular response to oxidative stress1.05E-02
119GO:0055114: oxidation-reduction process1.06E-02
120GO:0009750: response to fructose1.09E-02
121GO:0046856: phosphatidylinositol dephosphorylation1.09E-02
122GO:0019684: photosynthesis, light reaction1.09E-02
123GO:0009073: aromatic amino acid family biosynthetic process1.09E-02
124GO:0043085: positive regulation of catalytic activity1.09E-02
125GO:0006879: cellular iron ion homeostasis1.09E-02
126GO:0016024: CDP-diacylglycerol biosynthetic process1.20E-02
127GO:0006108: malate metabolic process1.31E-02
128GO:0010229: inflorescence development1.31E-02
129GO:0009718: anthocyanin-containing compound biosynthetic process1.31E-02
130GO:0005986: sucrose biosynthetic process1.31E-02
131GO:0010588: cotyledon vascular tissue pattern formation1.31E-02
132GO:0009785: blue light signaling pathway1.31E-02
133GO:0010628: positive regulation of gene expression1.31E-02
134GO:0006807: nitrogen compound metabolic process1.31E-02
135GO:0009644: response to high light intensity1.40E-02
136GO:0010540: basipetal auxin transport1.43E-02
137GO:0010143: cutin biosynthetic process1.43E-02
138GO:0019253: reductive pentose-phosphate cycle1.43E-02
139GO:0006855: drug transmembrane transport1.51E-02
140GO:0005985: sucrose metabolic process1.55E-02
141GO:0071732: cellular response to nitric oxide1.55E-02
142GO:0006810: transport1.57E-02
143GO:0009833: plant-type primary cell wall biogenesis1.67E-02
144GO:0006636: unsaturated fatty acid biosynthetic process1.67E-02
145GO:0006364: rRNA processing1.75E-02
146GO:2000377: regulation of reactive oxygen species metabolic process1.80E-02
147GO:0009695: jasmonic acid biosynthetic process1.93E-02
148GO:0031408: oxylipin biosynthetic process2.07E-02
149GO:0016226: iron-sulfur cluster assembly2.21E-02
150GO:0035428: hexose transmembrane transport2.21E-02
151GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.24E-02
152GO:0071369: cellular response to ethylene stimulus2.35E-02
153GO:0009686: gibberellin biosynthetic process2.35E-02
154GO:0016117: carotenoid biosynthetic process2.64E-02
155GO:0045454: cell redox homeostasis2.69E-02
156GO:0042391: regulation of membrane potential2.79E-02
157GO:0010182: sugar mediated signaling pathway2.94E-02
158GO:0046323: glucose import2.94E-02
159GO:0010268: brassinosteroid homeostasis2.94E-02
160GO:0071472: cellular response to salt stress2.94E-02
161GO:0010305: leaf vascular tissue pattern formation2.94E-02
162GO:0006662: glycerol ether metabolic process2.94E-02
163GO:0006869: lipid transport3.01E-02
164GO:0007018: microtubule-based movement3.10E-02
165GO:0019252: starch biosynthetic process3.25E-02
166GO:0008654: phospholipid biosynthetic process3.25E-02
167GO:0048825: cotyledon development3.25E-02
168GO:0016132: brassinosteroid biosynthetic process3.42E-02
169GO:0071554: cell wall organization or biogenesis3.42E-02
170GO:0000302: response to reactive oxygen species3.42E-02
171GO:0016032: viral process3.58E-02
172GO:0071281: cellular response to iron ion3.75E-02
173GO:0009567: double fertilization forming a zygote and endosperm3.92E-02
174GO:0016125: sterol metabolic process3.92E-02
175GO:0007623: circadian rhythm4.29E-02
176GO:0009451: RNA modification4.39E-02
177GO:0016126: sterol biosynthetic process4.44E-02
178GO:0001666: response to hypoxia4.44E-02
179GO:0009911: positive regulation of flower development4.44E-02
180GO:0042128: nitrate assimilation4.80E-02
181GO:0007166: cell surface receptor signaling pathway4.89E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0045436: lycopene beta cyclase activity0.00E+00
4GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
5GO:0010301: xanthoxin dehydrogenase activity0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
8GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
9GO:0016787: hydrolase activity4.93E-05
10GO:0008266: poly(U) RNA binding8.72E-05
11GO:0016168: chlorophyll binding8.98E-05
12GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.02E-04
13GO:0005528: FK506 binding1.43E-04
14GO:0004332: fructose-bisphosphate aldolase activity1.63E-04
15GO:0015245: fatty acid transporter activity3.40E-04
16GO:0005221: intracellular cyclic nucleotide activated cation channel activity3.40E-04
17GO:0004333: fumarate hydratase activity3.40E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity3.40E-04
19GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity3.40E-04
20GO:0042282: hydroxymethylglutaryl-CoA reductase activity3.40E-04
21GO:0051777: ent-kaurenoate oxidase activity3.40E-04
22GO:0004856: xylulokinase activity3.40E-04
23GO:0010242: oxygen evolving activity3.40E-04
24GO:0004321: fatty-acyl-CoA synthase activity3.40E-04
25GO:0045485: omega-6 fatty acid desaturase activity3.40E-04
26GO:0047746: chlorophyllase activity7.40E-04
27GO:0009977: proton motive force dependent protein transmembrane transporter activity7.40E-04
28GO:0004617: phosphoglycerate dehydrogenase activity7.40E-04
29GO:0033201: alpha-1,4-glucan synthase activity7.40E-04
30GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.40E-04
31GO:0042937: tripeptide transporter activity7.40E-04
32GO:0004022: alcohol dehydrogenase (NAD) activity1.10E-03
33GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.20E-03
34GO:0070402: NADPH binding1.20E-03
35GO:0008864: formyltetrahydrofolate deformylase activity1.20E-03
36GO:0004373: glycogen (starch) synthase activity1.20E-03
37GO:0004751: ribose-5-phosphate isomerase activity1.20E-03
38GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.54E-03
39GO:0031409: pigment binding1.54E-03
40GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.54E-03
41GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.54E-03
42GO:0001872: (1->3)-beta-D-glucan binding1.72E-03
43GO:0019201: nucleotide kinase activity1.72E-03
44GO:0016851: magnesium chelatase activity1.72E-03
45GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.72E-03
46GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.31E-03
47GO:0042936: dipeptide transporter activity2.31E-03
48GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.31E-03
49GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.31E-03
50GO:0004045: aminoacyl-tRNA hydrolase activity2.31E-03
51GO:0080032: methyl jasmonate esterase activity2.31E-03
52GO:0009011: starch synthase activity2.31E-03
53GO:0043495: protein anchor2.31E-03
54GO:0022891: substrate-specific transmembrane transporter activity2.46E-03
55GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.48E-03
56GO:0016773: phosphotransferase activity, alcohol group as acceptor2.96E-03
57GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.65E-03
58GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.65E-03
59GO:0004130: cytochrome-c peroxidase activity3.65E-03
60GO:0042578: phosphoric ester hydrolase activity3.65E-03
61GO:0016688: L-ascorbate peroxidase activity3.65E-03
62GO:0005242: inward rectifier potassium channel activity4.40E-03
63GO:0004017: adenylate kinase activity4.40E-03
64GO:0005261: cation channel activity4.40E-03
65GO:0016746: transferase activity, transferring acyl groups4.84E-03
66GO:0004620: phospholipase activity5.19E-03
67GO:0019899: enzyme binding5.19E-03
68GO:0003729: mRNA binding5.69E-03
69GO:0008312: 7S RNA binding6.03E-03
70GO:0015250: water channel activity6.03E-03
71GO:0043022: ribosome binding6.03E-03
72GO:0019843: rRNA binding6.21E-03
73GO:0004871: signal transducer activity7.35E-03
74GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.85E-03
75GO:0016207: 4-coumarate-CoA ligase activity7.85E-03
76GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity7.88E-03
77GO:0004222: metalloendopeptidase activity8.69E-03
78GO:0005381: iron ion transmembrane transporter activity8.82E-03
79GO:0008047: enzyme activator activity9.84E-03
80GO:0015386: potassium:proton antiporter activity1.09E-02
81GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.20E-02
82GO:0042802: identical protein binding1.27E-02
83GO:0016491: oxidoreductase activity1.27E-02
84GO:0015095: magnesium ion transmembrane transporter activity1.31E-02
85GO:0005262: calcium channel activity1.31E-02
86GO:0009982: pseudouridine synthase activity1.31E-02
87GO:0004565: beta-galactosidase activity1.31E-02
88GO:0008081: phosphoric diester hydrolase activity1.31E-02
89GO:0030552: cAMP binding1.55E-02
90GO:0030553: cGMP binding1.55E-02
91GO:0016788: hydrolase activity, acting on ester bonds1.67E-02
92GO:0051536: iron-sulfur cluster binding1.80E-02
93GO:0004857: enzyme inhibitor activity1.80E-02
94GO:0005216: ion channel activity1.93E-02
95GO:0015079: potassium ion transmembrane transporter activity1.93E-02
96GO:0004176: ATP-dependent peptidase activity2.07E-02
97GO:0016874: ligase activity2.34E-02
98GO:0016760: cellulose synthase (UDP-forming) activity2.35E-02
99GO:0005215: transporter activity2.63E-02
100GO:0047134: protein-disulfide reductase activity2.64E-02
101GO:0030551: cyclic nucleotide binding2.79E-02
102GO:0004791: thioredoxin-disulfide reductase activity3.10E-02
103GO:0016853: isomerase activity3.10E-02
104GO:0005355: glucose transmembrane transporter activity3.10E-02
105GO:0050662: coenzyme binding3.10E-02
106GO:0048038: quinone binding3.42E-02
107GO:0004518: nuclease activity3.58E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.75E-02
109GO:0000156: phosphorelay response regulator activity3.75E-02
110GO:0016759: cellulose synthase activity3.92E-02
111GO:0016791: phosphatase activity3.92E-02
112GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.00E-02
113GO:0008483: transaminase activity4.09E-02
114GO:0008237: metallopeptidase activity4.09E-02
115GO:0004672: protein kinase activity4.20E-02
116GO:0016413: O-acetyltransferase activity4.26E-02
117GO:0016597: amino acid binding4.26E-02
118GO:0004721: phosphoprotein phosphatase activity4.98E-02
119GO:0030247: polysaccharide binding4.98E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast1.76E-46
4GO:0009535: chloroplast thylakoid membrane4.47E-33
5GO:0009941: chloroplast envelope9.73E-20
6GO:0009570: chloroplast stroma1.14E-19
7GO:0009534: chloroplast thylakoid3.05E-19
8GO:0009579: thylakoid4.91E-12
9GO:0009543: chloroplast thylakoid lumen5.83E-09
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.43E-07
11GO:0031977: thylakoid lumen1.45E-06
12GO:0016021: integral component of membrane5.35E-06
13GO:0042651: thylakoid membrane1.65E-04
14GO:0010287: plastoglobule1.84E-04
15GO:0031969: chloroplast membrane2.63E-04
16GO:0045239: tricarboxylic acid cycle enzyme complex3.40E-04
17GO:0031361: integral component of thylakoid membrane3.40E-04
18GO:0009782: photosystem I antenna complex3.40E-04
19GO:0009515: granal stacked thylakoid3.40E-04
20GO:0009523: photosystem II4.50E-04
21GO:0080085: signal recognition particle, chloroplast targeting7.40E-04
22GO:0009897: external side of plasma membrane1.20E-03
23GO:0033281: TAT protein transport complex1.20E-03
24GO:0010007: magnesium chelatase complex1.20E-03
25GO:0030095: chloroplast photosystem II1.23E-03
26GO:0030076: light-harvesting complex1.38E-03
27GO:0009654: photosystem II oxygen evolving complex1.88E-03
28GO:0009526: plastid envelope2.31E-03
29GO:0016020: membrane2.49E-03
30GO:0055035: plastid thylakoid membrane2.96E-03
31GO:0019898: extrinsic component of membrane3.89E-03
32GO:0009706: chloroplast inner membrane4.66E-03
33GO:0009533: chloroplast stromal thylakoid5.19E-03
34GO:0009501: amyloplast6.03E-03
35GO:0030529: intracellular ribonucleoprotein complex6.03E-03
36GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.92E-03
37GO:0008180: COP9 signalosome7.85E-03
38GO:0032040: small-subunit processome1.20E-02
39GO:0009508: plastid chromosome1.31E-02
40GO:0005871: kinesin complex2.64E-02
41GO:0005770: late endosome2.94E-02
42GO:0009522: photosystem I3.10E-02
43GO:0005623: cell3.20E-02
44GO:0010319: stromule4.09E-02
45GO:0009295: nucleoid4.09E-02
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Gene type



Gene DE type