GO Enrichment Analysis of Co-expressed Genes with
AT3G52720
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 2 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 3 | GO:0090393: sepal giant cell development | 0.00E+00 |
| 4 | GO:0036172: thiamine salvage | 0.00E+00 |
| 5 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 6 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 7 | GO:0006094: gluconeogenesis | 1.37E-06 |
| 8 | GO:0005986: sucrose biosynthetic process | 1.37E-06 |
| 9 | GO:0019464: glycine decarboxylation via glycine cleavage system | 3.86E-06 |
| 10 | GO:0006546: glycine catabolic process | 3.86E-06 |
| 11 | GO:0006098: pentose-phosphate shunt | 4.19E-05 |
| 12 | GO:0006659: phosphatidylserine biosynthetic process | 6.10E-05 |
| 13 | GO:0009853: photorespiration | 6.10E-05 |
| 14 | GO:0051775: response to redox state | 6.10E-05 |
| 15 | GO:0055114: oxidation-reduction process | 9.80E-05 |
| 16 | GO:0019253: reductive pentose-phosphate cycle | 1.14E-04 |
| 17 | GO:0046686: response to cadmium ion | 1.33E-04 |
| 18 | GO:0097054: L-glutamate biosynthetic process | 1.48E-04 |
| 19 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.48E-04 |
| 20 | GO:0006081: cellular aldehyde metabolic process | 2.51E-04 |
| 21 | GO:0005977: glycogen metabolic process | 2.51E-04 |
| 22 | GO:0006011: UDP-glucose metabolic process | 2.51E-04 |
| 23 | GO:0000913: preprophase band assembly | 2.51E-04 |
| 24 | GO:0031022: nuclear migration along microfilament | 2.51E-04 |
| 25 | GO:0006000: fructose metabolic process | 2.51E-04 |
| 26 | GO:0032877: positive regulation of DNA endoreduplication | 3.65E-04 |
| 27 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.65E-04 |
| 28 | GO:0006107: oxaloacetate metabolic process | 3.65E-04 |
| 29 | GO:0006537: glutamate biosynthetic process | 3.65E-04 |
| 30 | GO:0009791: post-embryonic development | 3.87E-04 |
| 31 | GO:0006021: inositol biosynthetic process | 4.88E-04 |
| 32 | GO:0006734: NADH metabolic process | 4.88E-04 |
| 33 | GO:0019676: ammonia assimilation cycle | 4.88E-04 |
| 34 | GO:0031122: cytoplasmic microtubule organization | 4.88E-04 |
| 35 | GO:0009904: chloroplast accumulation movement | 6.19E-04 |
| 36 | GO:0009229: thiamine diphosphate biosynthetic process | 6.19E-04 |
| 37 | GO:0016120: carotene biosynthetic process | 6.19E-04 |
| 38 | GO:0043097: pyrimidine nucleoside salvage | 6.19E-04 |
| 39 | GO:0010942: positive regulation of cell death | 7.57E-04 |
| 40 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 7.57E-04 |
| 41 | GO:0070814: hydrogen sulfide biosynthetic process | 7.57E-04 |
| 42 | GO:0006206: pyrimidine nucleobase metabolic process | 7.57E-04 |
| 43 | GO:0009228: thiamine biosynthetic process | 7.57E-04 |
| 44 | GO:0009658: chloroplast organization | 8.00E-04 |
| 45 | GO:0017148: negative regulation of translation | 9.01E-04 |
| 46 | GO:0009903: chloroplast avoidance movement | 9.01E-04 |
| 47 | GO:0009854: oxidative photosynthetic carbon pathway | 9.01E-04 |
| 48 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 9.01E-04 |
| 49 | GO:0010196: nonphotochemical quenching | 1.05E-03 |
| 50 | GO:0009704: de-etiolation | 1.21E-03 |
| 51 | GO:0052543: callose deposition in cell wall | 1.21E-03 |
| 52 | GO:0048564: photosystem I assembly | 1.21E-03 |
| 53 | GO:0006002: fructose 6-phosphate metabolic process | 1.38E-03 |
| 54 | GO:0071482: cellular response to light stimulus | 1.38E-03 |
| 55 | GO:0000373: Group II intron splicing | 1.55E-03 |
| 56 | GO:0006096: glycolytic process | 1.91E-03 |
| 57 | GO:0000103: sulfate assimilation | 1.92E-03 |
| 58 | GO:0010192: mucilage biosynthetic process | 1.92E-03 |
| 59 | GO:0009970: cellular response to sulfate starvation | 1.92E-03 |
| 60 | GO:0019538: protein metabolic process | 1.92E-03 |
| 61 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.12E-03 |
| 62 | GO:0009773: photosynthetic electron transport in photosystem I | 2.12E-03 |
| 63 | GO:0006108: malate metabolic process | 2.52E-03 |
| 64 | GO:0042343: indole glucosinolate metabolic process | 2.96E-03 |
| 65 | GO:0006810: transport | 3.06E-03 |
| 66 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.18E-03 |
| 67 | GO:0009833: plant-type primary cell wall biogenesis | 3.18E-03 |
| 68 | GO:0006833: water transport | 3.18E-03 |
| 69 | GO:0007017: microtubule-based process | 3.65E-03 |
| 70 | GO:0098542: defense response to other organism | 3.89E-03 |
| 71 | GO:0030433: ubiquitin-dependent ERAD pathway | 4.15E-03 |
| 72 | GO:0016226: iron-sulfur cluster assembly | 4.15E-03 |
| 73 | GO:0009294: DNA mediated transformation | 4.40E-03 |
| 74 | GO:0016117: carotenoid biosynthetic process | 4.92E-03 |
| 75 | GO:0034220: ion transmembrane transport | 5.19E-03 |
| 76 | GO:0042631: cellular response to water deprivation | 5.19E-03 |
| 77 | GO:0010197: polar nucleus fusion | 5.46E-03 |
| 78 | GO:0007018: microtubule-based movement | 5.74E-03 |
| 79 | GO:0019252: starch biosynthetic process | 6.03E-03 |
| 80 | GO:0008654: phospholipid biosynthetic process | 6.03E-03 |
| 81 | GO:0010583: response to cyclopentenone | 6.61E-03 |
| 82 | GO:0016032: viral process | 6.61E-03 |
| 83 | GO:0007049: cell cycle | 6.77E-03 |
| 84 | GO:0010090: trichome morphogenesis | 6.91E-03 |
| 85 | GO:0080167: response to karrikin | 7.51E-03 |
| 86 | GO:0000910: cytokinesis | 7.84E-03 |
| 87 | GO:0010027: thylakoid membrane organization | 8.16E-03 |
| 88 | GO:0042742: defense response to bacterium | 8.51E-03 |
| 89 | GO:0030244: cellulose biosynthetic process | 9.82E-03 |
| 90 | GO:0009832: plant-type cell wall biogenesis | 1.02E-02 |
| 91 | GO:0016051: carbohydrate biosynthetic process | 1.16E-02 |
| 92 | GO:0006099: tricarboxylic acid cycle | 1.20E-02 |
| 93 | GO:0009744: response to sucrose | 1.39E-02 |
| 94 | GO:0000209: protein polyubiquitination | 1.43E-02 |
| 95 | GO:0005975: carbohydrate metabolic process | 1.45E-02 |
| 96 | GO:0006417: regulation of translation | 1.84E-02 |
| 97 | GO:0009416: response to light stimulus | 1.98E-02 |
| 98 | GO:0051726: regulation of cell cycle | 2.29E-02 |
| 99 | GO:0009058: biosynthetic process | 2.68E-02 |
| 100 | GO:0009845: seed germination | 2.73E-02 |
| 101 | GO:0009617: response to bacterium | 3.68E-02 |
| 102 | GO:0010468: regulation of gene expression | 3.68E-02 |
| 103 | GO:0009414: response to water deprivation | 3.90E-02 |
| 104 | GO:0071555: cell wall organization | 4.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 2 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 3 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 4 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 5 | GO:0004417: hydroxyethylthiazole kinase activity | 0.00E+00 |
| 6 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 7 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 8 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 9 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 10 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 11 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 12 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 13 | GO:0033721: aldehyde dehydrogenase (NADP+) activity | 0.00E+00 |
| 14 | GO:0050307: sucrose-phosphate phosphatase activity | 8.32E-07 |
| 15 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 2.00E-06 |
| 16 | GO:0004332: fructose-bisphosphate aldolase activity | 1.00E-05 |
| 17 | GO:0008746: NAD(P)+ transhydrogenase activity | 6.10E-05 |
| 18 | GO:0016041: glutamate synthase (ferredoxin) activity | 6.10E-05 |
| 19 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 6.10E-05 |
| 20 | GO:0010313: phytochrome binding | 6.10E-05 |
| 21 | GO:0008568: microtubule-severing ATPase activity | 6.10E-05 |
| 22 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.48E-04 |
| 23 | GO:0004512: inositol-3-phosphate synthase activity | 1.48E-04 |
| 24 | GO:0008967: phosphoglycolate phosphatase activity | 1.48E-04 |
| 25 | GO:0004781: sulfate adenylyltransferase (ATP) activity | 2.51E-04 |
| 26 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 2.51E-04 |
| 27 | GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity | 2.51E-04 |
| 28 | GO:0008430: selenium binding | 2.51E-04 |
| 29 | GO:0032947: protein complex scaffold | 2.51E-04 |
| 30 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.51E-04 |
| 31 | GO:0048027: mRNA 5'-UTR binding | 3.65E-04 |
| 32 | GO:0048038: quinone binding | 4.14E-04 |
| 33 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.88E-04 |
| 34 | GO:0008453: alanine-glyoxylate transaminase activity | 4.88E-04 |
| 35 | GO:0051538: 3 iron, 4 sulfur cluster binding | 6.19E-04 |
| 36 | GO:0016615: malate dehydrogenase activity | 7.57E-04 |
| 37 | GO:0042578: phosphoric ester hydrolase activity | 7.57E-04 |
| 38 | GO:0000210: NAD+ diphosphatase activity | 7.57E-04 |
| 39 | GO:0004029: aldehyde dehydrogenase (NAD) activity | 7.57E-04 |
| 40 | GO:0030060: L-malate dehydrogenase activity | 9.01E-04 |
| 41 | GO:0051753: mannan synthase activity | 9.01E-04 |
| 42 | GO:0004849: uridine kinase activity | 9.01E-04 |
| 43 | GO:0008135: translation factor activity, RNA binding | 1.38E-03 |
| 44 | GO:0047617: acyl-CoA hydrolase activity | 1.73E-03 |
| 45 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 1.73E-03 |
| 46 | GO:0003777: microtubule motor activity | 1.79E-03 |
| 47 | GO:0047372: acylglycerol lipase activity | 2.12E-03 |
| 48 | GO:0004860: protein kinase inhibitor activity | 2.12E-03 |
| 49 | GO:0008266: poly(U) RNA binding | 2.74E-03 |
| 50 | GO:0051536: iron-sulfur cluster binding | 3.42E-03 |
| 51 | GO:0004707: MAP kinase activity | 3.89E-03 |
| 52 | GO:0016760: cellulose synthase (UDP-forming) activity | 4.40E-03 |
| 53 | GO:0022891: substrate-specific transmembrane transporter activity | 4.40E-03 |
| 54 | GO:0016787: hydrolase activity | 5.42E-03 |
| 55 | GO:0000287: magnesium ion binding | 5.95E-03 |
| 56 | GO:0019901: protein kinase binding | 6.03E-03 |
| 57 | GO:0016788: hydrolase activity, acting on ester bonds | 6.18E-03 |
| 58 | GO:0005524: ATP binding | 6.59E-03 |
| 59 | GO:0004518: nuclease activity | 6.61E-03 |
| 60 | GO:0016759: cellulose synthase activity | 7.21E-03 |
| 61 | GO:0015250: water channel activity | 8.16E-03 |
| 62 | GO:0016168: chlorophyll binding | 8.48E-03 |
| 63 | GO:0003824: catalytic activity | 9.58E-03 |
| 64 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.05E-02 |
| 65 | GO:0016757: transferase activity, transferring glycosyl groups | 1.09E-02 |
| 66 | GO:0050897: cobalt ion binding | 1.09E-02 |
| 67 | GO:0003746: translation elongation factor activity | 1.16E-02 |
| 68 | GO:0016491: oxidoreductase activity | 1.21E-02 |
| 69 | GO:0005198: structural molecule activity | 1.51E-02 |
| 70 | GO:0051287: NAD binding | 1.59E-02 |
| 71 | GO:0016887: ATPase activity | 1.73E-02 |
| 72 | GO:0031625: ubiquitin protein ligase binding | 1.84E-02 |
| 73 | GO:0016874: ligase activity | 2.11E-02 |
| 74 | GO:0008017: microtubule binding | 3.36E-02 |
| 75 | GO:0005506: iron ion binding | 3.93E-02 |
| 76 | GO:0008168: methyltransferase activity | 4.31E-02 |
| 77 | GO:0050660: flavin adenine dinucleotide binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.57E-14 |
| 2 | GO:0009570: chloroplast stroma | 4.27E-10 |
| 3 | GO:0009941: chloroplast envelope | 7.24E-10 |
| 4 | GO:0048046: apoplast | 2.29E-09 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.38E-07 |
| 6 | GO:0005960: glycine cleavage complex | 2.00E-06 |
| 7 | GO:0009579: thylakoid | 1.10E-05 |
| 8 | GO:0009509: chromoplast | 2.51E-04 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 2.99E-04 |
| 10 | GO:0030286: dynein complex | 4.88E-04 |
| 11 | GO:0009517: PSII associated light-harvesting complex II | 4.88E-04 |
| 12 | GO:0009534: chloroplast thylakoid | 7.89E-04 |
| 13 | GO:0005829: cytosol | 2.39E-03 |
| 14 | GO:0019013: viral nucleocapsid | 2.52E-03 |
| 15 | GO:0010287: plastoglobule | 2.71E-03 |
| 16 | GO:0005875: microtubule associated complex | 3.18E-03 |
| 17 | GO:0005759: mitochondrial matrix | 3.58E-03 |
| 18 | GO:0005777: peroxisome | 4.15E-03 |
| 19 | GO:0005871: kinesin complex | 4.92E-03 |
| 20 | GO:0009523: photosystem II | 6.03E-03 |
| 21 | GO:0009504: cell plate | 6.03E-03 |
| 22 | GO:0005694: chromosome | 6.61E-03 |
| 23 | GO:0010319: stromule | 7.52E-03 |
| 24 | GO:0030529: intracellular ribonucleoprotein complex | 8.16E-03 |
| 25 | GO:0009707: chloroplast outer membrane | 9.82E-03 |
| 26 | GO:0005819: spindle | 1.23E-02 |
| 27 | GO:0031977: thylakoid lumen | 1.31E-02 |
| 28 | GO:0005747: mitochondrial respiratory chain complex I | 1.97E-02 |
| 29 | GO:0009543: chloroplast thylakoid lumen | 2.58E-02 |
| 30 | GO:0005623: cell | 2.63E-02 |
| 31 | GO:0009524: phragmoplast | 2.68E-02 |
| 32 | GO:0016020: membrane | 2.69E-02 |
| 33 | GO:0009536: plastid | 4.88E-02 |