co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G52290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080094: response to trehalose-6-phosphate	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0006573: valine metabolic process	0.00E+00
4	GO:0010411: xyloglucan metabolic process	6.45E-06
5	GO:0071555: cell wall organization	1.04E-05
6	GO:0006633: fatty acid biosynthetic process	1.40E-05
7	GO:0042546: cell wall biogenesis	2.42E-05
8	GO:0010583: response to cyclopentenone	7.39E-05
9	GO:0010480: microsporocyte differentiation	1.23E-04
10	GO:0042547: cell wall modification involved in multidimensional cell growth	1.23E-04
11	GO:0006551: leucine metabolic process	1.23E-04
12	GO:0006169: adenosine salvage	1.23E-04
13	GO:0010442: guard cell morphogenesis	1.23E-04
14	GO:0071370: cellular response to gibberellin stimulus	1.23E-04
15	GO:0000038: very long-chain fatty acid metabolic process	2.05E-04
16	GO:2000123: positive regulation of stomatal complex development	2.86E-04
17	GO:0010424: DNA methylation on cytosine within a CG sequence	2.86E-04
18	GO:0052541: plant-type cell wall cellulose metabolic process	2.86E-04
19	GO:0010069: zygote asymmetric cytokinesis in embryo sac	2.86E-04
20	GO:2001295: malonyl-CoA biosynthetic process	4.72E-04
21	GO:0006065: UDP-glucuronate biosynthetic process	4.72E-04
22	GO:0090506: axillary shoot meristem initiation	4.72E-04
23	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.13E-04
24	GO:0009294: DNA mediated transformation	6.14E-04
25	GO:0007231: osmosensory signaling pathway	6.76E-04
26	GO:0051016: barbed-end actin filament capping	6.76E-04
27	GO:0016117: carotenoid biosynthetic process	7.21E-04
28	GO:0042335: cuticle development	7.76E-04
29	GO:0000271: polysaccharide biosynthetic process	7.76E-04
30	GO:0045489: pectin biosynthetic process	8.35E-04
31	GO:0010037: response to carbon dioxide	8.97E-04
32	GO:0015976: carbon utilization	8.97E-04
33	GO:0009765: photosynthesis, light harvesting	8.97E-04
34	GO:2000122: negative regulation of stomatal complex development	8.97E-04
35	GO:0033500: carbohydrate homeostasis	8.97E-04
36	GO:2000038: regulation of stomatal complex development	8.97E-04
37	GO:0016123: xanthophyll biosynthetic process	1.13E-03
38	GO:0044209: AMP salvage	1.13E-03
39	GO:0010375: stomatal complex patterning	1.13E-03
40	GO:0016120: carotene biosynthetic process	1.13E-03
41	GO:0007267: cell-cell signaling	1.30E-03
42	GO:0009635: response to herbicide	1.39E-03
43	GO:0009099: valine biosynthetic process	1.66E-03
44	GO:0009554: megasporogenesis	1.66E-03
45	GO:0010067: procambium histogenesis	1.66E-03
46	GO:0009612: response to mechanical stimulus	1.66E-03
47	GO:0009082: branched-chain amino acid biosynthetic process	1.66E-03
48	GO:0006955: immune response	1.95E-03
49	GO:0030497: fatty acid elongation	1.95E-03
50	GO:0048437: floral organ development	1.95E-03
51	GO:0009645: response to low light intensity stimulus	1.95E-03
52	GO:0045010: actin nucleation	2.26E-03
53	GO:0052543: callose deposition in cell wall	2.26E-03
54	GO:0007155: cell adhesion	2.26E-03
55	GO:0016051: carbohydrate biosynthetic process	2.38E-03
56	GO:0009932: cell tip growth	2.58E-03
57	GO:0009097: isoleucine biosynthetic process	2.58E-03
58	GO:0006754: ATP biosynthetic process	2.91E-03
59	GO:0006468: protein phosphorylation	2.98E-03
60	GO:0006349: regulation of gene expression by genetic imprinting	3.26E-03
61	GO:0043069: negative regulation of programmed cell death	3.62E-03
62	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.62E-03
63	GO:0048229: gametophyte development	4.00E-03
64	GO:0010216: maintenance of DNA methylation	4.00E-03
65	GO:0006816: calcium ion transport	4.00E-03
66	GO:0015706: nitrate transport	4.39E-03
67	GO:0006857: oligopeptide transport	4.39E-03
68	GO:0030036: actin cytoskeleton organization	4.79E-03
69	GO:0010075: regulation of meristem growth	4.79E-03
70	GO:0009725: response to hormone	4.79E-03
71	GO:0010223: secondary shoot formation	5.20E-03
72	GO:0009934: regulation of meristem structural organization	5.20E-03
73	GO:0048768: root hair cell tip growth	5.20E-03
74	GO:0070588: calcium ion transmembrane transport	5.63E-03
75	GO:0010167: response to nitrate	5.63E-03
76	GO:0005985: sucrose metabolic process	5.63E-03
77	GO:0006071: glycerol metabolic process	6.06E-03
78	GO:0006833: water transport	6.06E-03
79	GO:0010025: wax biosynthetic process	6.06E-03
80	GO:0010026: trichome differentiation	6.98E-03
81	GO:0007017: microtubule-based process	6.98E-03
82	GO:0016998: cell wall macromolecule catabolic process	7.45E-03
83	GO:0009814: defense response, incompatible interaction	7.93E-03
84	GO:0001944: vasculature development	8.43E-03
85	GO:0010089: xylem development	8.93E-03
86	GO:0019722: calcium-mediated signaling	8.93E-03
87	GO:0034220: ion transmembrane transport	9.99E-03
88	GO:0010087: phloem or xylem histogenesis	9.99E-03
89	GO:0048653: anther development	9.99E-03
90	GO:0080022: primary root development	9.99E-03
91	GO:0045490: pectin catabolic process	1.01E-02
92	GO:0009741: response to brassinosteroid	1.05E-02
93	GO:0007166: cell surface receptor signaling pathway	1.15E-02
94	GO:0009416: response to light stimulus	1.16E-02
95	GO:0009617: response to bacterium	1.20E-02
96	GO:0016032: viral process	1.28E-02
97	GO:0009826: unidimensional cell growth	1.51E-02
98	GO:0016126: sterol biosynthetic process	1.58E-02
99	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.65E-02
100	GO:0042128: nitrate assimilation	1.71E-02
101	GO:0080167: response to karrikin	1.94E-02
102	GO:0000160: phosphorelay signal transduction system	1.98E-02
103	GO:0007568: aging	2.12E-02
104	GO:0009910: negative regulation of flower development	2.12E-02
105	GO:0010119: regulation of stomatal movement	2.12E-02
106	GO:0006631: fatty acid metabolic process	2.56E-02
107	GO:0009744: response to sucrose	2.71E-02
108	GO:0009736: cytokinin-activated signaling pathway	3.35E-02
109	GO:0051603: proteolysis involved in cellular protein catabolic process	3.44E-02
110	GO:0048367: shoot system development	3.86E-02
111	GO:0009734: auxin-activated signaling pathway	4.03E-02
112	GO:0009409: response to cold	4.10E-02
113	GO:0016569: covalent chromatin modification	4.13E-02
114	GO:0005975: carbohydrate metabolic process	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0050613: delta14-sterol reductase activity	0.00E+00
4	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.98E-06
5	GO:0016798: hydrolase activity, acting on glycosyl bonds	6.45E-06
6	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.30E-05
7	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.30E-05
8	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.30E-05
9	GO:0009922: fatty acid elongase activity	2.12E-05
10	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.27E-05
11	GO:0016722: oxidoreductase activity, oxidizing metal ions	9.81E-05
12	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.23E-04
13	GO:0042834: peptidoglycan binding	1.23E-04
14	GO:0080132: fatty acid alpha-hydroxylase activity	1.23E-04
15	GO:0004001: adenosine kinase activity	1.23E-04
16	GO:0003984: acetolactate synthase activity	1.23E-04
17	GO:0003979: UDP-glucose 6-dehydrogenase activity	4.72E-04
18	GO:0004075: biotin carboxylase activity	4.72E-04
19	GO:0033612: receptor serine/threonine kinase binding	5.17E-04
20	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	5.65E-04
21	GO:0030570: pectate lyase activity	6.14E-04
22	GO:0001872: (1->3)-beta-D-glucan binding	6.76E-04
23	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.76E-04
24	GO:0005507: copper ion binding	9.58E-04
25	GO:0003989: acetyl-CoA carboxylase activity	1.13E-03
26	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.66E-03
27	GO:0051753: mannan synthase activity	1.66E-03
28	GO:0004564: beta-fructofuranosidase activity	2.26E-03
29	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	2.91E-03
30	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.91E-03
31	GO:0004674: protein serine/threonine kinase activity	3.19E-03
32	GO:0015112: nitrate transmembrane transporter activity	3.26E-03
33	GO:0004575: sucrose alpha-glucosidase activity	3.26E-03
34	GO:0004089: carbonate dehydratase activity	4.79E-03
35	GO:0005262: calcium channel activity	4.79E-03
36	GO:0004565: beta-galactosidase activity	4.79E-03
37	GO:0004650: polygalacturonase activity	5.33E-03
38	GO:0016758: transferase activity, transferring hexosyl groups	7.11E-03
39	GO:0016829: lyase activity	7.90E-03
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.39E-03
41	GO:0005102: receptor binding	9.45E-03
42	GO:0019901: protein kinase binding	1.16E-02
43	GO:0004872: receptor activity	1.16E-02
44	GO:0004672: protein kinase activity	1.30E-02
45	GO:0051015: actin filament binding	1.34E-02
46	GO:0000156: phosphorelay response regulator activity	1.34E-02
47	GO:0016759: cellulose synthase activity	1.40E-02
48	GO:0005200: structural constituent of cytoskeleton	1.46E-02
49	GO:0016757: transferase activity, transferring glycosyl groups	1.49E-02
50	GO:0016597: amino acid binding	1.52E-02
51	GO:0015250: water channel activity	1.58E-02
52	GO:0030247: polysaccharide binding	1.78E-02
53	GO:0004185: serine-type carboxypeptidase activity	2.71E-02
54	GO:0043621: protein self-association	2.87E-02
55	GO:0015293: symporter activity	2.95E-02
56	GO:0051287: NAD binding	3.11E-02
57	GO:0005215: transporter activity	3.20E-02
58	GO:0022857: transmembrane transporter activity	4.13E-02
59	GO:0016301: kinase activity	4.19E-02
60	GO:0003779: actin binding	4.22E-02
61	GO:0016746: transferase activity, transferring acyl groups	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0031225: anchored component of membrane	6.88E-22
3	GO:0046658: anchored component of plasma membrane	2.52E-15
4	GO:0009505: plant-type cell wall	1.06E-10
5	GO:0048046: apoplast	5.94E-10
6	GO:0005618: cell wall	1.06E-09
7	GO:0005576: extracellular region	1.01E-08
8	GO:0005886: plasma membrane	1.35E-08
9	GO:0009506: plasmodesma	1.15E-05
10	GO:0016021: integral component of membrane	2.57E-04
11	GO:0005775: vacuolar lumen	6.76E-04
12	GO:0000139: Golgi membrane	7.67E-04
13	GO:0005773: vacuole	1.21E-03
14	GO:0010168: ER body	1.39E-03
15	GO:0000325: plant-type vacuole	2.17E-03
16	GO:0045298: tubulin complex	2.91E-03
17	GO:0005789: endoplasmic reticulum membrane	3.72E-03
18	GO:0030176: integral component of endoplasmic reticulum membrane	5.63E-03
19	GO:0005794: Golgi apparatus	8.68E-03
20	GO:0016020: membrane	1.44E-02
21	GO:0031902: late endosome membrane	2.56E-02
22	GO:0005887: integral component of plasma membrane	3.88E-02
23	GO:0005774: vacuolar membrane	4.58E-02
24	GO:0005783: endoplasmic reticulum	4.95E-02