Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G52140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0001732: formation of cytoplasmic translation initiation complex0.00E+00
2GO:0080180: 2-methylguanosine metabolic process0.00E+00
3GO:0002188: translation reinitiation0.00E+00
4GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay0.00E+00
5GO:0000478: endonucleolytic cleavage involved in rRNA processing0.00E+00
6GO:0007160: cell-matrix adhesion0.00E+00
7GO:0080056: petal vascular tissue pattern formation0.00E+00
8GO:0080057: sepal vascular tissue pattern formation0.00E+00
9GO:0007141: male meiosis I0.00E+00
10GO:0043069: negative regulation of programmed cell death5.27E-05
11GO:0010265: SCF complex assembly5.48E-05
12GO:0048363: mucilage pectin metabolic process5.48E-05
13GO:0051245: negative regulation of cellular defense response5.48E-05
14GO:0006422: aspartyl-tRNA aminoacylation5.48E-05
15GO:0033306: phytol metabolic process5.48E-05
16GO:0000266: mitochondrial fission7.32E-05
17GO:0051258: protein polymerization1.34E-04
18GO:0019441: tryptophan catabolic process to kynurenine1.34E-04
19GO:0060149: negative regulation of posttranscriptional gene silencing1.34E-04
20GO:0010359: regulation of anion channel activity2.28E-04
21GO:0006612: protein targeting to membrane3.33E-04
22GO:0010116: positive regulation of abscisic acid biosynthetic process3.33E-04
23GO:0080001: mucilage extrusion from seed coat3.33E-04
24GO:0000460: maturation of 5.8S rRNA4.45E-04
25GO:0010363: regulation of plant-type hypersensitive response4.45E-04
26GO:1902456: regulation of stomatal opening6.92E-04
27GO:0006014: D-ribose metabolic process6.92E-04
28GO:0016070: RNA metabolic process6.92E-04
29GO:0048232: male gamete generation6.92E-04
30GO:0000470: maturation of LSU-rRNA6.92E-04
31GO:0009867: jasmonic acid mediated signaling pathway8.40E-04
32GO:0006400: tRNA modification9.62E-04
33GO:1902074: response to salt9.62E-04
34GO:0016559: peroxisome fission1.11E-03
35GO:0010093: specification of floral organ identity1.26E-03
36GO:0009827: plant-type cell wall modification1.26E-03
37GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.28E-03
38GO:0007338: single fertilization1.41E-03
39GO:0019432: triglyceride biosynthetic process1.41E-03
40GO:0008202: steroid metabolic process1.58E-03
41GO:0051026: chiasma assembly1.75E-03
42GO:0030148: sphingolipid biosynthetic process1.93E-03
43GO:0010588: cotyledon vascular tissue pattern formation2.30E-03
44GO:0002237: response to molecule of bacterial origin2.49E-03
45GO:0000027: ribosomal large subunit assembly3.11E-03
46GO:0009863: salicylic acid mediated signaling pathway3.11E-03
47GO:0006633: fatty acid biosynthetic process3.12E-03
48GO:0048278: vesicle docking3.54E-03
49GO:0007131: reciprocal meiotic recombination3.77E-03
50GO:0007005: mitochondrion organization3.77E-03
51GO:0010087: phloem or xylem histogenesis4.71E-03
52GO:0010305: leaf vascular tissue pattern formation4.96E-03
53GO:0061025: membrane fusion5.22E-03
54GO:0042752: regulation of circadian rhythm5.22E-03
55GO:0019252: starch biosynthetic process5.48E-03
56GO:0007049: cell cycle5.89E-03
57GO:0016032: viral process6.00E-03
58GO:0048366: leaf development6.21E-03
59GO:0006914: autophagy6.55E-03
60GO:0006310: DNA recombination6.55E-03
61GO:0009567: double fertilization forming a zygote and endosperm6.55E-03
62GO:0050832: defense response to fungus7.18E-03
63GO:0006906: vesicle fusion7.99E-03
64GO:0006886: intracellular protein transport8.07E-03
65GO:0032259: methylation9.24E-03
66GO:0010119: regulation of stomatal movement9.86E-03
67GO:0006397: mRNA processing1.01E-02
68GO:0016051: carbohydrate biosynthetic process1.05E-02
69GO:0006887: exocytosis1.19E-02
70GO:0006897: endocytosis1.19E-02
71GO:0006631: fatty acid metabolic process1.19E-02
72GO:0046686: response to cadmium ion1.25E-02
73GO:0051707: response to other organism1.26E-02
74GO:0000209: protein polyubiquitination1.29E-02
75GO:0006260: DNA replication1.44E-02
76GO:0031347: regulation of defense response1.44E-02
77GO:0006364: rRNA processing1.55E-02
78GO:0009738: abscisic acid-activated signaling pathway1.66E-02
79GO:0048367: shoot system development1.79E-02
80GO:0018105: peptidyl-serine phosphorylation2.04E-02
81GO:0016310: phosphorylation2.22E-02
82GO:0006413: translational initiation2.80E-02
83GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.19E-02
84GO:0042742: defense response to bacterium3.48E-02
85GO:0042254: ribosome biogenesis4.07E-02
86GO:0006970: response to osmotic stress4.23E-02
87GO:0016192: vesicle-mediated transport4.85E-02
88GO:0046777: protein autophosphorylation4.90E-02
RankGO TermAdjusted P value
1GO:0042134: rRNA primary transcript binding5.48E-05
2GO:0004815: aspartate-tRNA ligase activity5.48E-05
3GO:0045140: inositol phosphoceramide synthase activity1.34E-04
4GO:0004061: arylformamidase activity1.34E-04
5GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.34E-04
6GO:0004566: beta-glucuronidase activity1.34E-04
7GO:0032934: sterol binding1.34E-04
8GO:0008430: selenium binding2.28E-04
9GO:0004040: amidase activity5.66E-04
10GO:0031593: polyubiquitin binding6.92E-04
11GO:0004144: diacylglycerol O-acyltransferase activity8.25E-04
12GO:0102391: decanoate--CoA ligase activity8.25E-04
13GO:0004747: ribokinase activity8.25E-04
14GO:0008143: poly(A) binding9.62E-04
15GO:0004467: long-chain fatty acid-CoA ligase activity9.62E-04
16GO:0008865: fructokinase activity1.11E-03
17GO:0008142: oxysterol binding1.26E-03
18GO:0003724: RNA helicase activity1.26E-03
19GO:0003678: DNA helicase activity1.41E-03
20GO:0004713: protein tyrosine kinase activity1.75E-03
21GO:0003712: transcription cofactor activity2.70E-03
22GO:0043130: ubiquitin binding3.11E-03
23GO:0016301: kinase activity4.06E-03
24GO:0004527: exonuclease activity4.96E-03
25GO:0008536: Ran GTPase binding4.96E-03
26GO:0008168: methyltransferase activity5.08E-03
27GO:0010181: FMN binding5.22E-03
28GO:0016791: phosphatase activity6.55E-03
29GO:0061630: ubiquitin protein ligase activity6.88E-03
30GO:0009931: calcium-dependent protein serine/threonine kinase activity7.99E-03
31GO:0004721: phosphoprotein phosphatase activity8.29E-03
32GO:0004004: ATP-dependent RNA helicase activity8.29E-03
33GO:0004683: calmodulin-dependent protein kinase activity8.29E-03
34GO:0030145: manganese ion binding9.86E-03
35GO:0005524: ATP binding1.03E-02
36GO:0000149: SNARE binding1.12E-02
37GO:0004712: protein serine/threonine/tyrosine kinase activity1.12E-02
38GO:0003676: nucleic acid binding1.18E-02
39GO:0003729: mRNA binding1.18E-02
40GO:0005484: SNAP receptor activity1.26E-02
41GO:0035091: phosphatidylinositol binding1.33E-02
42GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.55E-02
43GO:0031625: ubiquitin protein ligase binding1.67E-02
44GO:0000166: nucleotide binding1.72E-02
45GO:0008026: ATP-dependent helicase activity2.08E-02
46GO:0004252: serine-type endopeptidase activity2.52E-02
47GO:0008017: microtubule binding3.04E-02
48GO:0003743: translation initiation factor activity3.29E-02
49GO:0003824: catalytic activity3.82E-02
50GO:0003682: chromatin binding4.18E-02
51GO:0005515: protein binding4.65E-02
RankGO TermAdjusted P value
1GO:0055087: Ski complex0.00E+00
2GO:0071540: eukaryotic translation initiation factor 3 complex, eIF3e0.00E+00
3GO:0008305: integrin complex0.00E+00
4GO:0043614: multi-eIF complex5.48E-05
5GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m5.48E-05
6GO:0005829: cytosol5.55E-05
7GO:0031461: cullin-RING ubiquitin ligase complex3.33E-04
8GO:0000794: condensed nuclear chromosome9.62E-04
9GO:0030687: preribosome, large subunit precursor9.62E-04
10GO:0030131: clathrin adaptor complex1.11E-03
11GO:0010494: cytoplasmic stress granule1.41E-03
12GO:0030125: clathrin vesicle coat1.75E-03
13GO:0005765: lysosomal membrane1.93E-03
14GO:0005852: eukaryotic translation initiation factor 3 complex1.93E-03
15GO:0012505: endomembrane system1.94E-03
16GO:0009524: phragmoplast2.63E-03
17GO:0005741: mitochondrial outer membrane3.54E-03
18GO:0005905: clathrin-coated pit3.54E-03
19GO:0000790: nuclear chromatin4.47E-03
20GO:0005794: Golgi apparatus4.67E-03
21GO:0005778: peroxisomal membrane6.83E-03
22GO:0005783: endoplasmic reticulum7.71E-03
23GO:0000151: ubiquitin ligase complex8.91E-03
24GO:0005819: spindle1.12E-02
25GO:0031201: SNARE complex1.19E-02
26GO:0005730: nucleolus1.39E-02
27GO:0005886: plasma membrane1.61E-02
28GO:0016607: nuclear speck1.79E-02
29GO:0005834: heterotrimeric G-protein complex1.83E-02
30GO:0010287: plastoglobule2.25E-02
31GO:0005654: nucleoplasm2.29E-02
32GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.29E-02
33GO:0005874: microtubule4.56E-02
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Gene type



Gene DE type