co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080056: petal vascular tissue pattern formation	0.00E+00
2	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
3	GO:0002191: cap-dependent translational initiation	0.00E+00
4	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
5	GO:0010401: pectic galactan metabolic process	0.00E+00
6	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
7	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
8	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
9	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
10	GO:0010398: xylogalacturonan metabolic process	0.00E+00
11	GO:0006468: protein phosphorylation	1.11E-06
12	GO:0006212: uracil catabolic process	2.61E-06
13	GO:0019483: beta-alanine biosynthetic process	2.61E-06
14	GO:0008219: cell death	5.00E-05
15	GO:0042742: defense response to bacterium	1.91E-04
16	GO:0009819: drought recovery	2.12E-04
17	GO:0006491: N-glycan processing	2.12E-04
18	GO:0016337: single organismal cell-cell adhesion	2.36E-04
19	GO:0048482: plant ovule morphogenesis	2.36E-04
20	GO:0000303: response to superoxide	2.36E-04
21	GO:0006422: aspartyl-tRNA aminoacylation	2.36E-04
22	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.36E-04
23	GO:0002143: tRNA wobble position uridine thiolation	2.36E-04
24	GO:0043562: cellular response to nitrogen levels	2.63E-04
25	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.42E-04
26	GO:0015914: phospholipid transport	5.24E-04
27	GO:0006024: glycosaminoglycan biosynthetic process	5.24E-04
28	GO:0050684: regulation of mRNA processing	5.24E-04
29	GO:0052541: plant-type cell wall cellulose metabolic process	5.24E-04
30	GO:0030010: establishment of cell polarity	5.24E-04
31	GO:0051258: protein polymerization	5.24E-04
32	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.24E-04
33	GO:0015012: heparan sulfate proteoglycan biosynthetic process	5.24E-04
34	GO:0006499: N-terminal protein myristoylation	6.43E-04
35	GO:0010102: lateral root morphogenesis	6.63E-04
36	GO:0006952: defense response	6.89E-04
37	GO:0046621: negative regulation of organ growth	8.52E-04
38	GO:0006517: protein deglycosylation	8.52E-04
39	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	8.52E-04
40	GO:0010498: proteasomal protein catabolic process	8.52E-04
41	GO:0032784: regulation of DNA-templated transcription, elongation	8.52E-04
42	GO:0061158: 3'-UTR-mediated mRNA destabilization	8.52E-04
43	GO:0080055: low-affinity nitrate transport	8.52E-04
44	GO:0042780: tRNA 3'-end processing	8.52E-04
45	GO:2000377: regulation of reactive oxygen species metabolic process	1.02E-03
46	GO:0048194: Golgi vesicle budding	1.21E-03
47	GO:0070301: cellular response to hydrogen peroxide	1.21E-03
48	GO:0010104: regulation of ethylene-activated signaling pathway	1.21E-03
49	GO:0006809: nitric oxide biosynthetic process	1.21E-03
50	GO:0002679: respiratory burst involved in defense response	1.21E-03
51	GO:0000187: activation of MAPK activity	1.21E-03
52	GO:0031348: negative regulation of defense response	1.35E-03
53	GO:0010227: floral organ abscission	1.47E-03
54	GO:0006364: rRNA processing	1.52E-03
55	GO:0006486: protein glycosylation	1.52E-03
56	GO:0051123: RNA polymerase II transcriptional preinitiation complex assembly	1.62E-03
57	GO:0060548: negative regulation of cell death	1.62E-03
58	GO:0033320: UDP-D-xylose biosynthetic process	1.62E-03
59	GO:2000038: regulation of stomatal complex development	1.62E-03
60	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.62E-03
61	GO:0006665: sphingolipid metabolic process	2.07E-03
62	GO:0005513: detection of calcium ion	2.07E-03
63	GO:0009229: thiamine diphosphate biosynthetic process	2.07E-03
64	GO:0009620: response to fungus	2.12E-03
65	GO:0001731: formation of translation preinitiation complex	2.55E-03
66	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.55E-03
67	GO:0042732: D-xylose metabolic process	2.55E-03
68	GO:0048317: seed morphogenesis	2.55E-03
69	GO:1900425: negative regulation of defense response to bacterium	2.55E-03
70	GO:0009228: thiamine biosynthetic process	2.55E-03
71	GO:2000037: regulation of stomatal complex patterning	3.06E-03
72	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.06E-03
73	GO:0043966: histone H3 acetylation	3.06E-03
74	GO:0009612: response to mechanical stimulus	3.06E-03
75	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.06E-03
76	GO:0006694: steroid biosynthetic process	3.06E-03
77	GO:0043090: amino acid import	3.61E-03
78	GO:0009607: response to biotic stimulus	3.76E-03
79	GO:1900150: regulation of defense response to fungus	4.19E-03
80	GO:0032875: regulation of DNA endoreduplication	4.19E-03
81	GO:0000028: ribosomal small subunit assembly	4.19E-03
82	GO:0006413: translational initiation	4.36E-03
83	GO:0006002: fructose 6-phosphate metabolic process	4.79E-03
84	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	4.79E-03
85	GO:0009880: embryonic pattern specification	4.79E-03
86	GO:0006261: DNA-dependent DNA replication	4.79E-03
87	GO:0006367: transcription initiation from RNA polymerase II promoter	4.79E-03
88	GO:0046685: response to arsenic-containing substance	5.43E-03
89	GO:0009821: alkaloid biosynthetic process	5.43E-03
90	GO:0051865: protein autoubiquitination	5.43E-03
91	GO:0006470: protein dephosphorylation	5.65E-03
92	GO:0009867: jasmonic acid mediated signaling pathway	5.87E-03
93	GO:0042761: very long-chain fatty acid biosynthetic process	6.09E-03
94	GO:0010629: negative regulation of gene expression	6.78E-03
95	GO:0006995: cellular response to nitrogen starvation	6.78E-03
96	GO:0000103: sulfate assimilation	6.78E-03
97	GO:0072593: reactive oxygen species metabolic process	7.50E-03
98	GO:0006352: DNA-templated transcription, initiation	7.50E-03
99	GO:0030148: sphingolipid biosynthetic process	7.50E-03
100	GO:0012501: programmed cell death	8.25E-03
101	GO:0015706: nitrate transport	8.25E-03
102	GO:0071555: cell wall organization	8.86E-03
103	GO:0055046: microgametogenesis	9.02E-03
104	GO:0010588: cotyledon vascular tissue pattern formation	9.02E-03
105	GO:0006807: nitrogen compound metabolic process	9.02E-03
106	GO:0010229: inflorescence development	9.02E-03
107	GO:0002237: response to molecule of bacterial origin	9.82E-03
108	GO:0006446: regulation of translational initiation	9.82E-03
109	GO:0009736: cytokinin-activated signaling pathway	1.02E-02
110	GO:0010053: root epidermal cell differentiation	1.06E-02
111	GO:0009225: nucleotide-sugar metabolic process	1.06E-02
112	GO:0070588: calcium ion transmembrane transport	1.06E-02
113	GO:0010200: response to chitin	1.14E-02
114	GO:0046777: protein autophosphorylation	1.19E-02
115	GO:0000027: ribosomal large subunit assembly	1.24E-02
116	GO:0009626: plant-type hypersensitive response	1.29E-02
117	GO:0006874: cellular calcium ion homeostasis	1.32E-02
118	GO:0061077: chaperone-mediated protein folding	1.42E-02
119	GO:0009553: embryo sac development	1.42E-02
120	GO:0009814: defense response, incompatible interaction	1.51E-02
121	GO:0080092: regulation of pollen tube growth	1.51E-02
122	GO:0009742: brassinosteroid mediated signaling pathway	1.55E-02
123	GO:0009561: megagametogenesis	1.70E-02
124	GO:0009751: response to salicylic acid	1.76E-02
125	GO:0048364: root development	1.89E-02
126	GO:0042391: regulation of membrane potential	1.91E-02
127	GO:0000413: protein peptidyl-prolyl isomerization	1.91E-02
128	GO:0010087: phloem or xylem histogenesis	1.91E-02
129	GO:0045489: pectin biosynthetic process	2.01E-02
130	GO:0008360: regulation of cell shape	2.01E-02
131	GO:0010305: leaf vascular tissue pattern formation	2.01E-02
132	GO:0006662: glycerol ether metabolic process	2.01E-02
133	GO:0010197: polar nucleus fusion	2.01E-02
134	GO:0048544: recognition of pollen	2.12E-02
135	GO:0009790: embryo development	2.14E-02
136	GO:0050832: defense response to fungus	2.16E-02
137	GO:0006623: protein targeting to vacuole	2.23E-02
138	GO:0010183: pollen tube guidance	2.23E-02
139	GO:0009749: response to glucose	2.23E-02
140	GO:0002229: defense response to oomycetes	2.34E-02
141	GO:0010193: response to ozone	2.34E-02
142	GO:0000302: response to reactive oxygen species	2.34E-02
143	GO:0007264: small GTPase mediated signal transduction	2.45E-02
144	GO:0016032: viral process	2.45E-02
145	GO:0010150: leaf senescence	2.53E-02
146	GO:0019760: glucosinolate metabolic process	2.68E-02
147	GO:0010252: auxin homeostasis	2.68E-02
148	GO:0006914: autophagy	2.68E-02
149	GO:0051607: defense response to virus	2.92E-02
150	GO:0016126: sterol biosynthetic process	3.04E-02
151	GO:0001666: response to hypoxia	3.04E-02
152	GO:0009615: response to virus	3.04E-02
153	GO:0009816: defense response to bacterium, incompatible interaction	3.16E-02
154	GO:0009735: response to cytokinin	3.28E-02
155	GO:0042128: nitrate assimilation	3.29E-02
156	GO:0006950: response to stress	3.41E-02
157	GO:0016049: cell growth	3.54E-02
158	GO:0009817: defense response to fungus, incompatible interaction	3.67E-02
159	GO:0009826: unidimensional cell growth	3.76E-02
160	GO:0009407: toxin catabolic process	3.93E-02
161	GO:0042254: ribosome biogenesis	3.98E-02
162	GO:0016310: phosphorylation	4.06E-02
163	GO:0048527: lateral root development	4.07E-02
164	GO:0010119: regulation of stomatal movement	4.07E-02
165	GO:0010043: response to zinc ion	4.07E-02
166	GO:0006865: amino acid transport	4.20E-02
167	GO:0006970: response to osmotic stress	4.20E-02
168	GO:0006099: tricarboxylic acid cycle	4.48E-02
169	GO:0034599: cellular response to oxidative stress	4.48E-02
170	GO:0009723: response to ethylene	4.51E-02
171	GO:0048366: leaf development	4.58E-02
172	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0015370: solute:sodium symporter activity	0.00E+00
2	GO:0061604: molybdopterin-synthase sulfurtransferase activity	0.00E+00
3	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
4	GO:0003837: beta-ureidopropionase activity	0.00E+00
5	GO:0070577: lysine-acetylated histone binding	0.00E+00
6	GO:0004631: phosphomevalonate kinase activity	0.00E+00
7	GO:0098808: mRNA cap binding	0.00E+00
8	GO:0061605: molybdopterin-synthase adenylyltransferase activity	0.00E+00
9	GO:0050334: thiaminase activity	0.00E+00
10	GO:0004157: dihydropyrimidinase activity	0.00E+00
11	GO:0016504: peptidase activator activity	0.00E+00
12	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
13	GO:0004674: protein serine/threonine kinase activity	1.86E-06
14	GO:0016301: kinase activity	9.34E-06
15	GO:0052692: raffinose alpha-galactosidase activity	9.47E-06
16	GO:0004557: alpha-galactosidase activity	9.47E-06
17	GO:0005524: ATP binding	1.19E-05
18	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.12E-04
19	GO:0015085: calcium ion transmembrane transporter activity	2.36E-04
20	GO:0004815: aspartate-tRNA ligase activity	2.36E-04
21	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.36E-04
22	GO:0001102: RNA polymerase II activating transcription factor binding	2.36E-04
23	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.36E-04
24	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	5.24E-04
25	GO:0045140: inositol phosphoceramide synthase activity	5.24E-04
26	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.63E-04
27	GO:0080054: low-affinity nitrate transmembrane transporter activity	8.52E-04
28	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	8.52E-04
29	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	8.52E-04
30	GO:0042781: 3'-tRNA processing endoribonuclease activity	8.52E-04
31	GO:0043130: ubiquitin binding	1.02E-03
32	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	1.21E-03
33	GO:0004792: thiosulfate sulfurtransferase activity	1.21E-03
34	GO:0015293: symporter activity	1.21E-03
35	GO:0031176: endo-1,4-beta-xylanase activity	1.21E-03
36	GO:0033612: receptor serine/threonine kinase binding	1.23E-03
37	GO:0005516: calmodulin binding	1.44E-03
38	GO:0019199: transmembrane receptor protein kinase activity	1.62E-03
39	GO:0070628: proteasome binding	1.62E-03
40	GO:0015204: urea transmembrane transporter activity	1.62E-03
41	GO:0004672: protein kinase activity	1.72E-03
42	GO:0047134: protein-disulfide reductase activity	1.72E-03
43	GO:0008641: small protein activating enzyme activity	2.07E-03
44	GO:0004040: amidase activity	2.07E-03
45	GO:0004791: thioredoxin-disulfide reductase activity	2.15E-03
46	GO:0048040: UDP-glucuronate decarboxylase activity	2.55E-03
47	GO:0035252: UDP-xylosyltransferase activity	2.55E-03
48	GO:0046872: metal ion binding	2.62E-03
49	GO:0070403: NAD+ binding	3.06E-03
50	GO:0003950: NAD+ ADP-ribosyltransferase activity	3.06E-03
51	GO:0004012: phospholipid-translocating ATPase activity	3.06E-03
52	GO:0004602: glutathione peroxidase activity	3.06E-03
53	GO:0004559: alpha-mannosidase activity	3.06E-03
54	GO:0004722: protein serine/threonine phosphatase activity	3.51E-03
55	GO:0003872: 6-phosphofructokinase activity	3.61E-03
56	GO:0030515: snoRNA binding	3.61E-03
57	GO:0043295: glutathione binding	3.61E-03
58	GO:0004708: MAP kinase kinase activity	4.19E-03
59	GO:0030246: carbohydrate binding	4.35E-03
60	GO:0003843: 1,3-beta-D-glucan synthase activity	4.79E-03
61	GO:0008417: fucosyltransferase activity	5.43E-03
62	GO:0003743: translation initiation factor activity	5.81E-03
63	GO:0016844: strictosidine synthase activity	6.09E-03
64	GO:0004713: protein tyrosine kinase activity	6.78E-03
65	GO:0001054: RNA polymerase I activity	7.50E-03
66	GO:0046982: protein heterodimerization activity	8.11E-03
67	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.84E-03
68	GO:0005388: calcium-transporting ATPase activity	9.02E-03
69	GO:0000166: nucleotide binding	1.00E-02
70	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.02E-02
71	GO:0003824: catalytic activity	1.04E-02
72	GO:0030552: cAMP binding	1.06E-02
73	GO:0030553: cGMP binding	1.06E-02
74	GO:0017025: TBP-class protein binding	1.06E-02
75	GO:0003712: transcription cofactor activity	1.06E-02
76	GO:0005217: intracellular ligand-gated ion channel activity	1.06E-02
77	GO:0004970: ionotropic glutamate receptor activity	1.06E-02
78	GO:0004190: aspartic-type endopeptidase activity	1.06E-02
79	GO:0003954: NADH dehydrogenase activity	1.24E-02
80	GO:0005528: FK506 binding	1.24E-02
81	GO:0005216: ion channel activity	1.32E-02
82	GO:0035251: UDP-glucosyltransferase activity	1.42E-02
83	GO:0003727: single-stranded RNA binding	1.70E-02
84	GO:0005249: voltage-gated potassium channel activity	1.91E-02
85	GO:0004402: histone acetyltransferase activity	1.91E-02
86	GO:0030551: cyclic nucleotide binding	1.91E-02
87	GO:0004527: exonuclease activity	2.01E-02
88	GO:0004872: receptor activity	2.23E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.56E-02
90	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.80E-02
91	GO:0005515: protein binding	2.94E-02
92	GO:0051213: dioxygenase activity	3.04E-02
93	GO:0008375: acetylglucosaminyltransferase activity	3.29E-02
94	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.41E-02
95	GO:0000287: magnesium ion binding	3.83E-02
96	GO:0043531: ADP binding	4.28E-02
97	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.34E-02
98	GO:0003697: single-stranded DNA binding	4.34E-02
99	GO:0003993: acid phosphatase activity	4.48E-02
100	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0005886: plasma membrane	1.80E-06
3	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	2.36E-04
4	GO:0045252: oxoglutarate dehydrogenase complex	2.36E-04
5	GO:0016021: integral component of membrane	2.52E-04
6	GO:0005802: trans-Golgi network	4.40E-04
7	GO:0031304: intrinsic component of mitochondrial inner membrane	5.24E-04
8	GO:0000124: SAGA complex	5.24E-04
9	GO:0005794: Golgi apparatus	8.67E-04
10	GO:0005783: endoplasmic reticulum	1.35E-03
11	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.92E-03
12	GO:0005945: 6-phosphofructokinase complex	2.07E-03
13	GO:0005768: endosome	2.11E-03
14	GO:0016282: eukaryotic 43S preinitiation complex	2.55E-03
15	GO:0016363: nuclear matrix	3.06E-03
16	GO:0033290: eukaryotic 48S preinitiation complex	3.06E-03
17	GO:0005669: transcription factor TFIID complex	4.19E-03
18	GO:0005773: vacuole	4.28E-03
19	GO:0005829: cytosol	4.34E-03
20	GO:0000148: 1,3-beta-D-glucan synthase complex	4.79E-03
21	GO:0005736: DNA-directed RNA polymerase I complex	5.43E-03
22	GO:0005789: endoplasmic reticulum membrane	5.99E-03
23	GO:0005887: integral component of plasma membrane	6.67E-03
24	GO:0017119: Golgi transport complex	6.78E-03
25	GO:0032040: small-subunit processome	8.25E-03
26	GO:0005795: Golgi stack	1.06E-02
27	GO:0043234: protein complex	1.15E-02
28	GO:0005839: proteasome core complex	1.42E-02
29	GO:0012505: endomembrane system	1.42E-02
30	GO:0000139: Golgi membrane	1.50E-02
31	GO:0016020: membrane	1.99E-02
32	GO:0005730: nucleolus	2.19E-02
33	GO:0019898: extrinsic component of membrane	2.23E-02
34	GO:0009504: cell plate	2.23E-02
35	GO:0032580: Golgi cisterna membrane	2.68E-02
36	GO:0000786: nucleosome	4.20E-02
37	GO:0031902: late endosome membrane	4.90E-02