Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G51820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0090042: tubulin deacetylation0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0002184: cytoplasmic translational termination0.00E+00
10GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
11GO:0016553: base conversion or substitution editing0.00E+00
12GO:0015979: photosynthesis3.27E-15
13GO:0009773: photosynthetic electron transport in photosystem I1.86E-10
14GO:0032544: plastid translation2.14E-09
15GO:0010027: thylakoid membrane organization5.28E-06
16GO:0030388: fructose 1,6-bisphosphate metabolic process5.59E-06
17GO:0010196: nonphotochemical quenching7.84E-06
18GO:0071482: cellular response to light stimulus1.69E-05
19GO:0009735: response to cytokinin1.83E-05
20GO:0006000: fructose metabolic process1.97E-05
21GO:0009658: chloroplast organization2.64E-05
22GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.34E-05
23GO:0045727: positive regulation of translation7.72E-05
24GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.74E-04
25GO:0010190: cytochrome b6f complex assembly1.74E-04
26GO:0006810: transport2.25E-04
27GO:0030488: tRNA methylation2.36E-04
28GO:0010019: chloroplast-nucleus signaling pathway2.36E-04
29GO:0043489: RNA stabilization3.52E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process3.52E-04
31GO:1904964: positive regulation of phytol biosynthetic process3.52E-04
32GO:0071588: hydrogen peroxide mediated signaling pathway3.52E-04
33GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.52E-04
34GO:0048564: photosystem I assembly3.84E-04
35GO:0045454: cell redox homeostasis4.34E-04
36GO:0009657: plastid organization4.70E-04
37GO:0006002: fructose 6-phosphate metabolic process4.70E-04
38GO:0000373: Group II intron splicing5.65E-04
39GO:0042761: very long-chain fatty acid biosynthetic process6.66E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process7.67E-04
41GO:0009662: etioplast organization7.67E-04
42GO:0006729: tetrahydrobiopterin biosynthetic process7.67E-04
43GO:0010270: photosystem II oxygen evolving complex assembly7.67E-04
44GO:0006695: cholesterol biosynthetic process7.67E-04
45GO:0043085: positive regulation of catalytic activity8.95E-04
46GO:0006352: DNA-templated transcription, initiation8.95E-04
47GO:0055114: oxidation-reduction process9.59E-04
48GO:0005983: starch catabolic process1.02E-03
49GO:0015995: chlorophyll biosynthetic process1.03E-03
50GO:0006094: gluconeogenesis1.16E-03
51GO:0009767: photosynthetic electron transport chain1.16E-03
52GO:0005986: sucrose biosynthetic process1.16E-03
53GO:0018298: protein-chromophore linkage1.17E-03
54GO:0006518: peptide metabolic process1.24E-03
55GO:0010581: regulation of starch biosynthetic process1.24E-03
56GO:0051604: protein maturation1.24E-03
57GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.24E-03
58GO:1902448: positive regulation of shade avoidance1.24E-03
59GO:0010020: chloroplast fission1.30E-03
60GO:0010207: photosystem II assembly1.30E-03
61GO:0010025: wax biosynthetic process1.62E-03
62GO:1901332: negative regulation of lateral root development1.79E-03
63GO:0006165: nucleoside diphosphate phosphorylation1.79E-03
64GO:0006228: UTP biosynthetic process1.79E-03
65GO:0043572: plastid fission1.79E-03
66GO:0010088: phloem development1.79E-03
67GO:2001141: regulation of RNA biosynthetic process1.79E-03
68GO:0016556: mRNA modification1.79E-03
69GO:0006020: inositol metabolic process1.79E-03
70GO:0051085: chaperone mediated protein folding requiring cofactor1.79E-03
71GO:0009152: purine ribonucleotide biosynthetic process1.79E-03
72GO:0046653: tetrahydrofolate metabolic process1.79E-03
73GO:0009052: pentose-phosphate shunt, non-oxidative branch1.79E-03
74GO:0010306: rhamnogalacturonan II biosynthetic process1.79E-03
75GO:0006241: CTP biosynthetic process1.79E-03
76GO:0009768: photosynthesis, light harvesting in photosystem I1.98E-03
77GO:0016226: iron-sulfur cluster assembly2.38E-03
78GO:0006546: glycine catabolic process2.40E-03
79GO:0006021: inositol biosynthetic process2.40E-03
80GO:0071483: cellular response to blue light2.40E-03
81GO:0010021: amylopectin biosynthetic process2.40E-03
82GO:0051781: positive regulation of cell division2.40E-03
83GO:0006183: GTP biosynthetic process2.40E-03
84GO:0015994: chlorophyll metabolic process2.40E-03
85GO:0010236: plastoquinone biosynthetic process3.07E-03
86GO:0045038: protein import into chloroplast thylakoid membrane3.07E-03
87GO:0006461: protein complex assembly3.07E-03
88GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.79E-03
89GO:0006828: manganese ion transport3.79E-03
90GO:0032973: amino acid export3.79E-03
91GO:0006014: D-ribose metabolic process3.79E-03
92GO:0046855: inositol phosphate dephosphorylation3.79E-03
93GO:0010304: PSII associated light-harvesting complex II catabolic process3.79E-03
94GO:0042549: photosystem II stabilization3.79E-03
95GO:0010358: leaf shaping3.79E-03
96GO:0019252: starch biosynthetic process4.11E-03
97GO:0042026: protein refolding4.57E-03
98GO:0010189: vitamin E biosynthetic process4.57E-03
99GO:0009854: oxidative photosynthetic carbon pathway4.57E-03
100GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.40E-03
101GO:0009645: response to low light intensity stimulus5.40E-03
102GO:0006400: tRNA modification5.40E-03
103GO:0043090: amino acid import5.40E-03
104GO:0009819: drought recovery6.27E-03
105GO:0010492: maintenance of shoot apical meristem identity6.27E-03
106GO:0045292: mRNA cis splicing, via spliceosome6.27E-03
107GO:0009793: embryo development ending in seed dormancy6.31E-03
108GO:0017004: cytochrome complex assembly7.19E-03
109GO:0019430: removal of superoxide radicals7.19E-03
110GO:0006412: translation7.84E-03
111GO:0042744: hydrogen peroxide catabolic process7.86E-03
112GO:0045337: farnesyl diphosphate biosynthetic process8.16E-03
113GO:0033384: geranyl diphosphate biosynthetic process8.16E-03
114GO:0048507: meristem development8.16E-03
115GO:0010206: photosystem II repair8.16E-03
116GO:0080144: amino acid homeostasis8.16E-03
117GO:0009817: defense response to fungus, incompatible interaction8.33E-03
118GO:1900865: chloroplast RNA modification9.17E-03
119GO:0010380: regulation of chlorophyll biosynthetic process9.17E-03
120GO:0010205: photoinhibition9.17E-03
121GO:0006779: porphyrin-containing compound biosynthetic process9.17E-03
122GO:0009631: cold acclimation9.64E-03
123GO:0006535: cysteine biosynthetic process from serine1.02E-02
124GO:0006782: protoporphyrinogen IX biosynthetic process1.02E-02
125GO:0045036: protein targeting to chloroplast1.02E-02
126GO:0009451: RNA modification1.04E-02
127GO:0009637: response to blue light1.06E-02
128GO:0009853: photorespiration1.06E-02
129GO:0034599: cellular response to oxidative stress1.11E-02
130GO:0009073: aromatic amino acid family biosynthetic process1.13E-02
131GO:0000272: polysaccharide catabolic process1.13E-02
132GO:0009750: response to fructose1.13E-02
133GO:0018119: peptidyl-cysteine S-nitrosylation1.13E-02
134GO:0006415: translational termination1.13E-02
135GO:0006816: calcium ion transport1.13E-02
136GO:0008152: metabolic process1.19E-02
137GO:0006508: proteolysis1.22E-02
138GO:0006790: sulfur compound metabolic process1.25E-02
139GO:0006631: fatty acid metabolic process1.26E-02
140GO:0010114: response to red light1.37E-02
141GO:0019253: reductive pentose-phosphate cycle1.49E-02
142GO:0009409: response to cold1.49E-02
143GO:0005985: sucrose metabolic process1.61E-02
144GO:0090351: seedling development1.61E-02
145GO:0046854: phosphatidylinositol phosphorylation1.61E-02
146GO:0019762: glucosinolate catabolic process1.74E-02
147GO:0006364: rRNA processing1.85E-02
148GO:0019344: cysteine biosynthetic process1.88E-02
149GO:0008299: isoprenoid biosynthetic process2.01E-02
150GO:0016575: histone deacetylation2.01E-02
151GO:0006418: tRNA aminoacylation for protein translation2.01E-02
152GO:0016114: terpenoid biosynthetic process2.15E-02
153GO:0061077: chaperone-mediated protein folding2.15E-02
154GO:0006096: glycolytic process2.18E-02
155GO:0048316: seed development2.26E-02
156GO:0035428: hexose transmembrane transport2.29E-02
157GO:0007005: mitochondrion organization2.29E-02
158GO:0009411: response to UV2.44E-02
159GO:0009561: megagametogenesis2.59E-02
160GO:0006396: RNA processing2.71E-02
161GO:0016117: carotenoid biosynthetic process2.74E-02
162GO:0042335: cuticle development2.90E-02
163GO:0042631: cellular response to water deprivation2.90E-02
164GO:0045893: positive regulation of transcription, DNA-templated2.96E-02
165GO:0006662: glycerol ether metabolic process3.06E-02
166GO:0048868: pollen tube development3.06E-02
167GO:0046323: glucose import3.06E-02
168GO:0009741: response to brassinosteroid3.06E-02
169GO:0010268: brassinosteroid homeostasis3.06E-02
170GO:0006814: sodium ion transport3.22E-02
171GO:0006457: protein folding3.53E-02
172GO:0032259: methylation3.54E-02
173GO:0000302: response to reactive oxygen species3.55E-02
174GO:0016132: brassinosteroid biosynthetic process3.55E-02
175GO:0080156: mitochondrial mRNA modification3.55E-02
176GO:0016032: viral process3.72E-02
177GO:0030163: protein catabolic process3.90E-02
178GO:0016125: sterol metabolic process4.07E-02
179GO:0071805: potassium ion transmembrane transport4.25E-02
180GO:0009627: systemic acquired resistance4.99E-02
181GO:0042128: nitrate assimilation4.99E-02
RankGO TermAdjusted P value
1GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
2GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
3GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
4GO:0043014: alpha-tubulin binding0.00E+00
5GO:0051721: protein phosphatase 2A binding0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0042903: tubulin deacetylase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0051738: xanthophyll binding0.00E+00
14GO:0005048: signal sequence binding0.00E+00
15GO:0046608: carotenoid isomerase activity0.00E+00
16GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
17GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
18GO:0008887: glycerate kinase activity0.00E+00
19GO:0019843: rRNA binding7.46E-09
20GO:0008237: metallopeptidase activity3.89E-06
21GO:0004047: aminomethyltransferase activity5.59E-06
22GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.59E-06
23GO:0004176: ATP-dependent peptidase activity1.01E-05
24GO:0004222: metalloendopeptidase activity1.34E-05
25GO:0001053: plastid sigma factor activity7.72E-05
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.72E-05
27GO:0016987: sigma factor activity7.72E-05
28GO:0008266: poly(U) RNA binding9.45E-05
29GO:0016168: chlorophyll binding9.93E-05
30GO:0050308: sugar-phosphatase activity3.52E-04
31GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.52E-04
32GO:0019203: carbohydrate phosphatase activity3.52E-04
33GO:0003867: 4-aminobutyrate transaminase activity3.52E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.52E-04
35GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.52E-04
36GO:0010012: steroid 22-alpha hydroxylase activity3.52E-04
37GO:0009496: plastoquinol--plastocyanin reductase activity3.52E-04
38GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.52E-04
39GO:0004033: aldo-keto reductase (NADP) activity3.84E-04
40GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.22E-04
41GO:0008934: inositol monophosphate 1-phosphatase activity7.67E-04
42GO:0052833: inositol monophosphate 4-phosphatase activity7.67E-04
43GO:0050017: L-3-cyanoalanine synthase activity7.67E-04
44GO:0008967: phosphoglycolate phosphatase activity7.67E-04
45GO:0047746: chlorophyllase activity7.67E-04
46GO:0010297: heteropolysaccharide binding7.67E-04
47GO:0052832: inositol monophosphate 3-phosphatase activity7.67E-04
48GO:0033201: alpha-1,4-glucan synthase activity7.67E-04
49GO:0016630: protochlorophyllide reductase activity7.67E-04
50GO:0008047: enzyme activator activity7.77E-04
51GO:0051082: unfolded protein binding9.13E-04
52GO:0031072: heat shock protein binding1.16E-03
53GO:0002161: aminoacyl-tRNA editing activity1.24E-03
54GO:0004751: ribose-5-phosphate isomerase activity1.24E-03
55GO:0030267: glyoxylate reductase (NADP) activity1.24E-03
56GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.24E-03
57GO:0008864: formyltetrahydrofolate deformylase activity1.24E-03
58GO:0070330: aromatase activity1.24E-03
59GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.24E-03
60GO:0004373: glycogen (starch) synthase activity1.24E-03
61GO:0031409: pigment binding1.62E-03
62GO:0048487: beta-tubulin binding1.79E-03
63GO:0016149: translation release factor activity, codon specific1.79E-03
64GO:0004550: nucleoside diphosphate kinase activity1.79E-03
65GO:0043023: ribosomal large subunit binding1.79E-03
66GO:0004300: enoyl-CoA hydratase activity1.79E-03
67GO:0008508: bile acid:sodium symporter activity1.79E-03
68GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.79E-03
69GO:0051536: iron-sulfur cluster binding1.80E-03
70GO:0005528: FK506 binding1.80E-03
71GO:0015079: potassium ion transmembrane transporter activity1.98E-03
72GO:0005509: calcium ion binding2.27E-03
73GO:0043495: protein anchor2.40E-03
74GO:0004659: prenyltransferase activity2.40E-03
75GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.40E-03
76GO:0004045: aminoacyl-tRNA hydrolase activity2.40E-03
77GO:0009011: starch synthase activity2.40E-03
78GO:1990137: plant seed peroxidase activity2.40E-03
79GO:0051537: 2 iron, 2 sulfur cluster binding2.41E-03
80GO:0043621: protein self-association2.41E-03
81GO:0022891: substrate-specific transmembrane transporter activity2.60E-03
82GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.66E-03
83GO:0018685: alkane 1-monooxygenase activity3.07E-03
84GO:0016773: phosphotransferase activity, alcohol group as acceptor3.07E-03
85GO:0003959: NADPH dehydrogenase activity3.07E-03
86GO:0004130: cytochrome-c peroxidase activity3.79E-03
87GO:0016688: L-ascorbate peroxidase activity3.79E-03
88GO:2001070: starch binding3.79E-03
89GO:0050662: coenzyme binding3.83E-03
90GO:0004791: thioredoxin-disulfide reductase activity3.83E-03
91GO:0046872: metal ion binding3.98E-03
92GO:0048038: quinone binding4.40E-03
93GO:0004747: ribokinase activity4.57E-03
94GO:0004124: cysteine synthase activity4.57E-03
95GO:0051920: peroxiredoxin activity4.57E-03
96GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.57E-03
97GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.57E-03
98GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.57E-03
99GO:0019899: enzyme binding5.40E-03
100GO:0016831: carboxy-lyase activity5.40E-03
101GO:0008865: fructokinase activity6.27E-03
102GO:0016209: antioxidant activity6.27E-03
103GO:0008312: 7S RNA binding6.27E-03
104GO:0052747: sinapyl alcohol dehydrogenase activity6.27E-03
105GO:0008173: RNA methyltransferase activity7.19E-03
106GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.19E-03
107GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.16E-03
108GO:0003747: translation release factor activity8.16E-03
109GO:0004337: geranyltranstransferase activity8.16E-03
110GO:0005384: manganese ion transmembrane transporter activity9.17E-03
111GO:0030234: enzyme regulator activity1.02E-02
112GO:0016740: transferase activity1.02E-02
113GO:0003723: RNA binding1.05E-02
114GO:0015386: potassium:proton antiporter activity1.13E-02
115GO:0044183: protein binding involved in protein folding1.13E-02
116GO:0047372: acylglycerol lipase activity1.13E-02
117GO:0004161: dimethylallyltranstransferase activity1.13E-02
118GO:0009055: electron carrier activity1.14E-02
119GO:0004519: endonuclease activity1.16E-02
120GO:0003735: structural constituent of ribosome1.19E-02
121GO:0000049: tRNA binding1.25E-02
122GO:0045551: cinnamyl-alcohol dehydrogenase activity1.25E-02
123GO:0004022: alcohol dehydrogenase (NAD) activity1.37E-02
124GO:0015095: magnesium ion transmembrane transporter activity1.37E-02
125GO:0016491: oxidoreductase activity1.41E-02
126GO:0008168: methyltransferase activity1.67E-02
127GO:0004601: peroxidase activity1.75E-02
128GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.85E-02
129GO:0004407: histone deacetylase activity1.88E-02
130GO:0016887: ATPase activity1.98E-02
131GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.26E-02
132GO:0047134: protein-disulfide reductase activity2.74E-02
133GO:0004812: aminoacyl-tRNA ligase activity2.74E-02
134GO:0003824: catalytic activity2.85E-02
135GO:0005355: glucose transmembrane transporter activity3.22E-02
136GO:0008483: transaminase activity4.25E-02
137GO:0003729: mRNA binding4.69E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast2.02E-92
4GO:0009570: chloroplast stroma8.77E-43
5GO:0009535: chloroplast thylakoid membrane1.44E-40
6GO:0009941: chloroplast envelope5.48E-40
7GO:0009579: thylakoid5.94E-23
8GO:0009534: chloroplast thylakoid6.71E-23
9GO:0009543: chloroplast thylakoid lumen1.80E-14
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.88E-11
11GO:0009654: photosystem II oxygen evolving complex5.37E-11
12GO:0031977: thylakoid lumen8.49E-11
13GO:0031969: chloroplast membrane4.27E-08
14GO:0019898: extrinsic component of membrane4.67E-08
15GO:0010287: plastoglobule1.89E-06
16GO:0030095: chloroplast photosystem II3.12E-06
17GO:0042651: thylakoid membrane8.21E-06
18GO:0009523: photosystem II3.85E-05
19GO:0005840: ribosome2.91E-04
20GO:0009533: chloroplast stromal thylakoid3.06E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]3.52E-04
22GO:0009547: plastid ribosome3.52E-04
23GO:0009782: photosystem I antenna complex3.52E-04
24GO:0009536: plastid4.50E-04
25GO:0010319: stromule7.28E-04
26GO:0080085: signal recognition particle, chloroplast targeting7.67E-04
27GO:0000427: plastid-encoded plastid RNA polymerase complex7.67E-04
28GO:0030076: light-harvesting complex1.45E-03
29GO:0009532: plastid stroma2.18E-03
30GO:0009517: PSII associated light-harvesting complex II2.40E-03
31GO:0009526: plastid envelope2.40E-03
32GO:0048046: apoplast2.96E-03
33GO:0055035: plastid thylakoid membrane3.07E-03
34GO:0009512: cytochrome b6f complex3.07E-03
35GO:0009706: chloroplast inner membrane5.00E-03
36GO:0016020: membrane5.88E-03
37GO:0009501: amyloplast6.27E-03
38GO:0030529: intracellular ribonucleoprotein complex6.37E-03
39GO:0009539: photosystem II reaction center7.19E-03
40GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.19E-03
41GO:0005811: lipid particle7.19E-03
42GO:0000311: plastid large ribosomal subunit1.25E-02
43GO:0000312: plastid small ribosomal subunit1.49E-02
44GO:0015935: small ribosomal subunit2.15E-02
45GO:0022626: cytosolic ribosome2.27E-02
46GO:0009522: photosystem I3.22E-02
47GO:0043231: intracellular membrane-bounded organelle4.21E-02
48GO:0009295: nucleoid4.25E-02
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Gene type



Gene DE type